RNA–Protein interactions for RNA: ENST00000571043.5

RPAIN-208, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,547 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-208ENST00000571043 LAMTOR2Q9Y2Q5 125 aa12.88□□□□□ -0.35
RPAIN-208ENST00000571043 C7orf71A4D174 169 aa12.87□□□□□ -0.35
RPAIN-208ENST00000571043 H3BVH4 76 aa12.87□□□□□ -0.35
RPAIN-208ENST00000571043 S100A4P26447 101 aaKnown RBP12.87□□□□□ -0.35
RPAIN-208ENST00000571043 SCRT2Q9NQ03 307 aa12.87□□□□□ -0.35
RPAIN-208ENST00000571043 TRAV25A0A0B4J276 109 aa12.86□□□□□ -0.35
RPAIN-208ENST00000571043 KRTDAPP60985 99 aa12.86□□□□□ -0.35
RPAIN-208ENST00000571043 PKIAP61925 76 aa12.86□□□□□ -0.35
RPAIN-208ENST00000571043 TMEM61Q8N0U2 210 aa12.86□□□□□ -0.35
RPAIN-208ENST00000571043 PRSS3P2Q8NHM4 247 aa12.86□□□□□ -0.35
RPAIN-208ENST00000571043 SIGLEC8Q9NYZ4 499 aa12.86□□□□□ -0.35
RPAIN-208ENST00000571043 NOTCH3Q9UM47 2321 aa12.85□□□□□ -0.35
RPAIN-208ENST00000571043 IGHV1-24A0A0C4DH33 117 aa12.85□□□□□ -0.35
RPAIN-208ENST00000571043 A8MTW9 85 aa12.85□□□□□ -0.35
RPAIN-208ENST00000571043 CDKN1BP46527 198 aa12.85□□□□□ -0.35
RPAIN-208ENST00000571043 FAM159AQ6UWV7 190 aa12.85□□□□□ -0.35
RPAIN-208ENST00000571043 FA2HQ7L5A8 372 aa12.85□□□□□ -0.35
RPAIN-208ENST00000571043 C3orf79P0CE67 100 aa12.84□□□□□ -0.35
RPAIN-208ENST00000571043 TDRG1Q3Y452 100 aa12.84□□□□□ -0.35
RPAIN-208ENST00000571043 AP5S1Q9NUS5 200 aa12.84□□□□□ -0.35
RPAIN-208ENST00000571043 TSTD3H0UI37 97 aa12.83□□□□□ -0.35
RPAIN-208ENST00000571043 GNRH2O43555 120 aa12.83□□□□□ -0.35
RPAIN-208ENST00000571043 DEFB131AP59861 70 aa12.83□□□□□ -0.35
RPAIN-208ENST00000571043 AMTNQ6UX39 209 aa12.83□□□□□ -0.35
RPAIN-208ENST00000571043 TEX43Q6ZNM6 134 aa12.83□□□□□ -0.35
RPAIN-208ENST00000571043 Q8N976 141 aa12.83□□□□□ -0.35
RPAIN-208ENST00000571043 SPAG8Q99932 426 aaPredicted RBP12.83□□□□□ -0.35
RPAIN-208ENST00000571043 PHLDA3Q9Y5J5 127 aa12.83□□□□□ -0.35
RPAIN-208ENST00000571043 TRAV12-3A0A0B4J271 114 aa12.83□□□□□ -0.36
RPAIN-208ENST00000571043 OR4C46A6NHA9 309 aa12.83□□□□□ -0.36
RPAIN-208ENST00000571043 NPYP01303 97 aa12.83□□□□□ -0.36
RPAIN-208ENST00000571043 RNASE3P12724 160 aaKnown RBP12.83□□□□□ -0.36
RPAIN-208ENST00000571043 HLA-DRB4P13762 266 aa12.83□□□□□ -0.36
RPAIN-208ENST00000571043 EVI2AP22794 236 aa12.83□□□□□ -0.36
RPAIN-208ENST00000571043 ZNF664Q8N3J9 261 aa12.83□□□□□ -0.36
RPAIN-208ENST00000571043 HLA-DRB4X5D2U9 266 aa12.83□□□□□ -0.36
RPAIN-208ENST00000571043 SMKR1H3BMG3 65 aa12.82□□□□□ -0.36
RPAIN-208ENST00000571043 NXPH4O95158 308 aa12.82□□□□□ -0.36
RPAIN-208ENST00000571043 IGKV3-20P01619 116 aa12.82□□□□□ -0.36
RPAIN-208ENST00000571043 PF4P02776 101 aa12.82□□□□□ -0.36
RPAIN-208ENST00000571043 IFI27P40305 119 aaPredicted RBP12.82□□□□□ -0.36
RPAIN-208ENST00000571043 CD300EQ496F6 205 aaPredicted RBP12.82□□□□□ -0.36
RPAIN-208ENST00000571043 TIMM8BQ9Y5J9 83 aaPredicted RBP12.82□□□□□ -0.36
RPAIN-208ENST00000571043 LEPROTL1O95214 131 aa12.81□□□□□ -0.36
RPAIN-208ENST00000571043 NCR2O95944 276 aa12.81□□□□□ -0.36
RPAIN-208ENST00000571043 BTF3P20290 206 aaKnown RBP12.81□□□□□ -0.36
RPAIN-208ENST00000571043 LINC00482Q8N8I6 264 aa12.81□□□□□ -0.36
RPAIN-208ENST00000571043 MAP1LC3AQ9H492 121 aa12.81□□□□□ -0.36
RPAIN-208ENST00000571043 LOC389332A0A1B0GUA5 103 aa12.8□□□□□ -0.36
RPAIN-208ENST00000571043 LINC00587B1AMM8 73 aa12.8□□□□□ -0.36
RPAIN-208ENST00000571043 H3BMM0 161 aa12.8□□□□□ -0.36
RPAIN-208ENST00000571043 PMCHL1Q16048 86 aa12.8□□□□□ -0.36
RPAIN-208ENST00000571043 MRAP2Q96G30 205 aa12.8□□□□□ -0.36
RPAIN-208ENST00000571043 MAP6D1Q9H9H5 199 aa12.8□□□□□ -0.36
RPAIN-208ENST00000571043 HSPB8Q9UJY1 196 aa12.8□□□□□ -0.36
RPAIN-208ENST00000571043 PKD1L1Q8TDX9 2849 aa12.8□□□□□ -0.36
RPAIN-208ENST00000571043 KNCNA6PVL3 124 aa12.79□□□□□ -0.36
RPAIN-208ENST00000571043 M0R381 172 aa12.79□□□□□ -0.36
RPAIN-208ENST00000571043 TNFRSF6BO95407 300 aa12.79□□□□□ -0.36
RPAIN-208ENST00000571043 SPINK13Q1W4C9 94 aa12.79□□□□□ -0.36
RPAIN-208ENST00000571043 DEFB125Q8N687 156 aa12.79□□□□□ -0.36
RPAIN-208ENST00000571043 ZNF256Q9Y2P7 627 aaPredicted RBP12.79□□□□□ -0.36
RPAIN-208ENST00000571043 TRAV12-2A0A075B6T6 113 aa12.78□□□□□ -0.36
RPAIN-208ENST00000571043 IGHV1OR15-1A0A075B7D0 117 aa12.78□□□□□ -0.36
RPAIN-208ENST00000571043 LINC01546A6NGU7 62 aa12.78□□□□□ -0.36
RPAIN-208ENST00000571043 PRSS47A8MTI9 375 aa12.78□□□□□ -0.36
RPAIN-208ENST00000571043 CD7P09564 240 aa12.78□□□□□ -0.36
RPAIN-208ENST00000571043 WFDC9Q8NEX5 89 aa12.78□□□□□ -0.36
RPAIN-208ENST00000571043 OR2K2Q8NGT1 345 aa12.78□□□□□ -0.36
RPAIN-208ENST00000571043 SPATA3Q8NHX4 192 aa12.78□□□□□ -0.36
RPAIN-208ENST00000571043 TMEM70Q9BUB7 260 aa12.78□□□□□ -0.36
RPAIN-208ENST00000571043 PRO1933Q9H354 126 aa12.78□□□□□ -0.36
RPAIN-208ENST00000571043 DPH3P1Q9H4G8 78 aa12.78□□□□□ -0.36
RPAIN-208ENST00000571043 CRXO43186 299 aaPredicted RBP12.78□□□□□ -0.36
RPAIN-208ENST00000571043 CLUHP3Q96NS8 147 aa12.78□□□□□ -0.36
RPAIN-208ENST00000571043 AP1S3Q96PC3 154 aa12.78□□□□□ -0.36
RPAIN-208ENST00000571043 NXT2Q9NPJ8 142 aaKnown RBP12.78□□□□□ -0.36
RPAIN-208ENST00000571043 IGHV3-16A0A0C4DH30 117 aa12.77□□□□□ -0.37
RPAIN-208ENST00000571043 KIR2DL5BA0A0G2JN68 375 aa12.77□□□□□ -0.37
RPAIN-208ENST00000571043 KIR2DL5BA0A0G2JPC4 375 aa12.77□□□□□ -0.37
RPAIN-208ENST00000571043 KIR2DL5AQ8N109 375 aa12.77□□□□□ -0.37
RPAIN-208ENST00000571043 C9orf85Q96MD7 179 aa12.77□□□□□ -0.37
RPAIN-208ENST00000571043 GAS8-AS1O95177 125 aa12.76□□□□□ -0.37
RPAIN-208ENST00000571043 POM121L12Q8N7R1 296 aa12.76□□□□□ -0.37
RPAIN-208ENST00000571043 NRACQ8N912 160 aa12.76□□□□□ -0.37
RPAIN-208ENST00000571043 VAMP8Q9BV40 100 aa12.76□□□□□ -0.37
RPAIN-208ENST00000571043 SORL1Q92673 2214 aa12.76□□□□□ -0.37
RPAIN-208ENST00000571043 SYS1-DBNDD2H3BUS1 97 aa12.75□□□□□ -0.37
RPAIN-208ENST00000571043 DDTP30046 118 aa12.75□□□□□ -0.37
RPAIN-208ENST00000571043 MAP1LC3CQ9BXW4 147 aa12.75□□□□□ -0.37
RPAIN-208ENST00000571043 TRGV11A0A075B6L2 103 aa12.74□□□□□ -0.37
RPAIN-208ENST00000571043 A0A096LNJ9 63 aa12.74□□□□□ -0.37
RPAIN-208ENST00000571043 RBMY1BA6NDE4 496 aaKnown RBP12.74□□□□□ -0.37
RPAIN-208ENST00000571043 RBMY1EA6NEQ0 496 aaKnown RBP12.74□□□□□ -0.37
RPAIN-208ENST00000571043 RBMY1DP0C7P1 496 aaKnown RBP12.74□□□□□ -0.37
RPAIN-208ENST00000571043 GATA1P15976 413 aaPredicted RBP12.74□□□□□ -0.37
RPAIN-208ENST00000571043 CMC4P56277 68 aaPredicted RBP12.74□□□□□ -0.37
RPAIN-208ENST00000571043 PET117Q6UWS5 81 aa12.74□□□□□ -0.37
RPAIN-208ENST00000571043 LINC00173Q6ZV60 143 aa12.74□□□□□ -0.37
RPAIN-208ENST00000571043 Q8N1Y9 231 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms