RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 UNC79Q9P2D8 2635 aa7.48□□□□□ -1.21
VPS53-206ENST00000570359 TRAV9-2A0A087WT02 112 aa7.48□□□□□ -1.21
VPS53-206ENST00000570359 J3QLI3 93 aa7.48□□□□□ -1.21
VPS53-206ENST00000570359 HSPB8Q9UJY1 196 aa7.48□□□□□ -1.21
VPS53-206ENST00000570359 PHLDA3Q9Y5J5 127 aa7.48□□□□□ -1.21
VPS53-206ENST00000570359 TNFRSF6BO95407 300 aa7.48□□□□□ -1.21
VPS53-206ENST00000570359 CACNG7P62955 275 aa7.48□□□□□ -1.21
VPS53-206ENST00000570359 VAMP3Q15836 100 aa7.48□□□□□ -1.21
VPS53-206ENST00000570359 TMEM191AQ9H0A3 160 aa7.48□□□□□ -1.21
VPS53-206ENST00000570359 MAP1LC3AQ9H492 121 aa7.48□□□□□ -1.21
VPS53-206ENST00000570359 A0A096LNJ9 63 aa7.47□□□□□ -1.21
VPS53-206ENST00000570359 OVOL1O14753 267 aa7.47□□□□□ -1.21
VPS53-206ENST00000570359 Q6ZVH6 145 aa7.47□□□□□ -1.21
VPS53-206ENST00000570359 ERASQ7Z444 233 aa7.47□□□□□ -1.21
VPS53-206ENST00000570359 LEPP41159 167 aa7.47□□□□□ -1.21
VPS53-206ENST00000570359 SPINK13Q1W4C9 94 aa7.47□□□□□ -1.21
VPS53-206ENST00000570359 NEGR1Q7Z3B1 354 aa7.47□□□□□ -1.21
VPS53-206ENST00000570359 COX8CQ7Z4L0 72 aa7.47□□□□□ -1.21
VPS53-206ENST00000570359 JPT2Q9H910 190 aa7.47□□□□□ -1.21
VPS53-206ENST00000570359 TRAV21A0A0B4J279 112 aa7.46□□□□□ -1.21
VPS53-206ENST00000570359 MRPL53Q96EL3 112 aaKnown RBP7.46□□□□□ -1.21
VPS53-206ENST00000570359 LINC00477Q96M19 166 aa7.46□□□□□ -1.21
VPS53-206ENST00000570359 ZNF747Q9BV97 191 aa7.46□□□□□ -1.21
VPS53-206ENST00000570359 NACAE9PAV3 2078 aa7.46□□□□□ -1.22
VPS53-206ENST00000570359 PRM2P04554 102 aa7.46□□□□□ -1.22
VPS53-206ENST00000570359 CD7P09564 240 aa7.46□□□□□ -1.22
VPS53-206ENST00000570359 ASIPP42127 132 aa7.46□□□□□ -1.22
VPS53-206ENST00000570359 FAM74A4Q5TZK3 123 aa7.46□□□□□ -1.22
VPS53-206ENST00000570359 KRTAP1-3Q8IUG1 177 aa7.46□□□□□ -1.22
VPS53-206ENST00000570359 MUC4Q99102 2169 aa7.46□□□□□ -1.22
VPS53-206ENST00000570359 A0A087WWL8 130 aa7.45□□□□□ -1.22
VPS53-206ENST00000570359 TAX1BP3O14907 124 aa7.45□□□□□ -1.22
VPS53-206ENST00000570359 ID1P41134 155 aa7.45□□□□□ -1.22
VPS53-206ENST00000570359 DEFB125Q8N687 156 aa7.45□□□□□ -1.22
VPS53-206ENST00000570359 OR11H1Q8NG94 326 aa7.45□□□□□ -1.22
VPS53-206ENST00000570359 DCANP1Q8TF63 244 aa7.45□□□□□ -1.22
VPS53-206ENST00000570359 RPL39LQ96EH5 51 aaKnown RBP7.45□□□□□ -1.22
VPS53-206ENST00000570359 KNCNA6PVL3 124 aa7.45□□□□□ -1.22
VPS53-206ENST00000570359 HBDP02042 147 aa7.45□□□□□ -1.22
VPS53-206ENST00000570359 LGALS1P09382 135 aaKnown RBP7.45□□□□□ -1.22
VPS53-206ENST00000570359 TCTEX1D4Q5JR98 221 aa7.45□□□□□ -1.22
VPS53-206ENST00000570359 KLHL30-AS1Q8NEE0 82 aa7.45□□□□□ -1.22
VPS53-206ENST00000570359 OR2K2Q8NGT1 345 aa7.44□□□□□ -1.22
VPS53-206ENST00000570359 TMEM158Q8WZ71 300 aa7.44□□□□□ -1.22
VPS53-206ENST00000570359 DPF1Q92782 380 aa7.44□□□□□ -1.22
VPS53-206ENST00000570359 AKAP9Q99996 3911 aa7.44□□□□□ -1.22
VPS53-206ENST00000570359 F5H697 171 aa7.44□□□□□ -1.22
VPS53-206ENST00000570359 PRSS1P07477 247 aa7.44□□□□□ -1.22
VPS53-206ENST00000570359 SRSF2Q01130 221 aaKnown RBP7.44□□□□□ -1.22
VPS53-206ENST00000570359 FAM159AQ6UWV7 190 aa7.44□□□□□ -1.22
VPS53-206ENST00000570359 GATD1Q8NB37 220 aa7.44□□□□□ -1.22
VPS53-206ENST00000570359 ST20Q9HBF5 79 aa7.44□□□□□ -1.22
VPS53-206ENST00000570359 YAE1D1Q9NRH1 226 aa7.44□□□□□ -1.22
VPS53-206ENST00000570359 DKK2Q9UBU2 259 aa7.44□□□□□ -1.22
VPS53-206ENST00000570359 U3KQK5 164 aa7.44□□□□□ -1.22
VPS53-206ENST00000570359 HIVEP2P31629 2446 aa7.44□□□□□ -1.22
VPS53-206ENST00000570359 SNRPD3P62318 126 aaKnown RBP7.43□□□□□ -1.22
VPS53-206ENST00000570359 IFI27L1Q96BM0 104 aa7.43□□□□□ -1.22
VPS53-206ENST00000570359 PSMG3-AS1Q96PY0 264 aa7.43□□□□□ -1.22
VPS53-206ENST00000570359 ATP6V0BQ99437 205 aa7.43□□□□□ -1.22
VPS53-206ENST00000570359 PDZD2O15018 2839 aa7.43□□□□□ -1.22
VPS53-206ENST00000570359 FN1P02751 2386 aaKnown RBP7.43□□□□□ -1.22
VPS53-206ENST00000570359 C12orf54Q6X4T0 127 aa7.43□□□□□ -1.22
VPS53-206ENST00000570359 SMR3AQ99954 134 aa7.43□□□□□ -1.22
VPS53-206ENST00000570359 GAGE12BA1L429 117 aa7.42□□□□□ -1.22
VPS53-206ENST00000570359 FSHBP01225 129 aa7.42□□□□□ -1.22
VPS53-206ENST00000570359 SETXQ7Z333 2677 aaKnown RBP7.42□□□□□ -1.22
VPS53-206ENST00000570359 DNAJC9-AS1A6NH13 148 aa7.42□□□□□ -1.22
VPS53-206ENST00000570359 CD5LO43866 347 aa7.42□□□□□ -1.22
VPS53-206ENST00000570359 NMUP48645 174 aa7.42□□□□□ -1.22
VPS53-206ENST00000570359 DEFB131AP59861 70 aa7.42□□□□□ -1.22
VPS53-206ENST00000570359 C7orf71A4D174 169 aa7.42□□□□□ -1.22
VPS53-206ENST00000570359 ELANEP08246 267 aa7.42□□□□□ -1.22
VPS53-206ENST00000570359 SCGB1A1P11684 91 aa7.42□□□□□ -1.22
VPS53-206ENST00000570359 RNASE3P12724 160 aaKnown RBP7.42□□□□□ -1.22
VPS53-206ENST00000570359 BVES-AS1Q5T3Y7 98 aa7.42□□□□□ -1.22
VPS53-206ENST00000570359 APRG1Q8IVJ8 170 aa7.42□□□□□ -1.22
VPS53-206ENST00000570359 FOXC2Q99958 501 aa7.42□□□□□ -1.22
VPS53-206ENST00000570359 CNFNQ9BYD5 112 aa7.42□□□□□ -1.22
VPS53-206ENST00000570359 MDFICQ9P1T7 246 aa7.42□□□□□ -1.22
VPS53-206ENST00000570359 C2CD3Q4AC94 2353 aa7.41□□□□□ -1.22
VPS53-206ENST00000570359 IGHV3-73A0A0B4J1V6 119 aa7.41□□□□□ -1.22
VPS53-206ENST00000570359 K7EMT4 169 aa7.41□□□□□ -1.22
VPS53-206ENST00000570359 NUDT3O95989 172 aa7.41□□□□□ -1.22
VPS53-206ENST00000570359 DYNLRB2Q8TF09 96 aa7.41□□□□□ -1.22
VPS53-206ENST00000570359 UBE2E2Q96LR5 201 aa7.41□□□□□ -1.22
VPS53-206ENST00000570359 TTTY13Q9BZ97 58 aa7.41□□□□□ -1.22
VPS53-206ENST00000570359 G3V4G9 280 aa7.41□□□□□ -1.22
VPS53-206ENST00000570359 J3QKU1 62 aa7.41□□□□□ -1.22
VPS53-206ENST00000570359 CRXO43186 299 aaPredicted RBP7.41□□□□□ -1.22
VPS53-206ENST00000570359 PLA2G2AP14555 144 aa7.41□□□□□ -1.22
VPS53-206ENST00000570359 LINC01545Q5VT33 79 aa7.41□□□□□ -1.22
VPS53-206ENST00000570359 ADAMTSL5Q6ZMM2 481 aa7.41□□□□□ -1.22
VPS53-206ENST00000570359 DLX4Q92988 240 aaPredicted RBP7.41□□□□□ -1.22
VPS53-206ENST00000570359 ESM1Q9NQ30 184 aa7.41□□□□□ -1.22
VPS53-206ENST00000570359 SMIM17P0DL12 118 aa7.4□□□□□ -1.22
VPS53-206ENST00000570359 MPV17L2Q567V2 206 aa7.4□□□□□ -1.22
VPS53-206ENST00000570359 SLC25A34Q6PIV7 304 aa7.4□□□□□ -1.22
VPS53-206ENST00000570359 TMEM61Q8N0U2 210 aa7.4□□□□□ -1.22
VPS53-206ENST00000570359 NRACQ8N912 160 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms