RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 PTH2Q96A98 100 aa6.55□□□□□ -1.36
VPS35-211ENST00000569950 V9GYV3 84 aa6.55□□□□□ -1.36
VPS35-211ENST00000569950 SACSQ9NZJ4 4579 aa6.55□□□□□ -1.36
VPS35-211ENST00000569950 CXorf65A6NEN9 183 aa6.54□□□□□ -1.36
VPS35-211ENST00000569950 SNURFLB1AK76 121 aa6.54□□□□□ -1.36
VPS35-211ENST00000569950 MED14OSP0DP75 135 aa6.54□□□□□ -1.36
VPS35-211ENST00000569950 HOXA5P20719 270 aa6.54□□□□□ -1.36
VPS35-211ENST00000569950 LGALS9BQ3B8N2 356 aa6.54□□□□□ -1.36
VPS35-211ENST00000569950 UFSP1Q6NVU6 142 aa6.54□□□□□ -1.36
VPS35-211ENST00000569950 OR2D3Q8NGH3 330 aa6.54□□□□□ -1.36
VPS35-211ENST00000569950 OR10AG1Q8NH19 301 aa6.54□□□□□ -1.36
VPS35-211ENST00000569950 SPXQ9BT56 116 aa6.54□□□□□ -1.36
VPS35-211ENST00000569950 JPT2Q9H910 190 aa6.54□□□□□ -1.36
VPS35-211ENST00000569950 OSTCQ9NRP0 149 aa6.54□□□□□ -1.36
VPS35-211ENST00000569950 TRGV1A0A0A0MS02 117 aa6.53□□□□□ -1.36
VPS35-211ENST00000569950 GAGE12BA1L429 117 aa6.53□□□□□ -1.36
VPS35-211ENST00000569950 M0R2P5 195 aa6.53□□□□□ -1.36
VPS35-211ENST00000569950 GAGE7O76087 117 aa6.53□□□□□ -1.36
VPS35-211ENST00000569950 P01737 135 aa6.53□□□□□ -1.36
VPS35-211ENST00000569950 OR5AL1P0C617 328 aa6.53□□□□□ -1.36
VPS35-211ENST00000569950 GAGE12FP0CL80 117 aa6.53□□□□□ -1.36
VPS35-211ENST00000569950 GAGE12GP0CL81 117 aa6.53□□□□□ -1.36
VPS35-211ENST00000569950 GAGE12IP0CL82 117 aa6.53□□□□□ -1.36
VPS35-211ENST00000569950 DEFB130BP0DP73 79 aa6.53□□□□□ -1.36
VPS35-211ENST00000569950 DEFB130AP0DP74 79 aa6.53□□□□□ -1.36
VPS35-211ENST00000569950 CTRLP40313 264 aa6.53□□□□□ -1.36
VPS35-211ENST00000569950 ASIPP42127 132 aa6.53□□□□□ -1.36
VPS35-211ENST00000569950 SLC7A5P1Q8MH63 180 aa6.53□□□□□ -1.36
VPS35-211ENST00000569950 MUC7Q8TAX7 377 aa6.53□□□□□ -1.36
VPS35-211ENST00000569950 CNFNQ9BYD5 112 aa6.53□□□□□ -1.36
VPS35-211ENST00000569950 RPP21Q9H633 154 aaKnown RBP6.53□□□□□ -1.36
VPS35-211ENST00000569950 CARHSP1Q9Y2V2 147 aaKnown RBP6.53□□□□□ -1.36
VPS35-211ENST00000569950 MUC21A0A0G2JKD1 596 aa6.52□□□□□ -1.37
VPS35-211ENST00000569950 MUC21A0A140T8X8 626 aa6.52□□□□□ -1.37
VPS35-211ENST00000569950 TEX48A0A1B0GUV7 120 aa6.52□□□□□ -1.37
VPS35-211ENST00000569950 LINC00315P59091 139 aa6.52□□□□□ -1.37
VPS35-211ENST00000569950 DAD1P61803 113 aa6.52□□□□□ -1.37
VPS35-211ENST00000569950 ADIRFQ15847 76 aa6.52□□□□□ -1.37
VPS35-211ENST00000569950 CT83Q5H943 113 aa6.52□□□□□ -1.37
VPS35-211ENST00000569950 PHLDA1Q8WV24 401 aaPredicted RBP6.52□□□□□ -1.37
VPS35-211ENST00000569950 SFRP2Q96HF1 295 aa6.52□□□□□ -1.37
VPS35-211ENST00000569950 ZNF479Q96JC4 524 aa6.52□□□□□ -1.37
VPS35-211ENST00000569950 SEC11CQ9BY50 192 aa6.52□□□□□ -1.37
VPS35-211ENST00000569950 MSRB1Q9NZV6 116 aa6.52□□□□□ -1.37
VPS35-211ENST00000569950 DNAH6Q9C0G6 4158 aa6.51□□□□□ -1.37
VPS35-211ENST00000569950 IGHV4-4A0A075B6R2 117 aa6.51□□□□□ -1.37
VPS35-211ENST00000569950 J3QL48 77 aa6.51□□□□□ -1.37
VPS35-211ENST00000569950 RS1O15537 224 aa6.51□□□□□ -1.37
VPS35-211ENST00000569950 GATCO43716 136 aaKnown RBP6.51□□□□□ -1.37
VPS35-211ENST00000569950 FOXA3P55318 350 aaPredicted RBP6.51□□□□□ -1.37
VPS35-211ENST00000569950 ERVFC1-1P60608 527 aa6.51□□□□□ -1.37
VPS35-211ENST00000569950 FHL2Q14192 279 aa6.51□□□□□ -1.37
VPS35-211ENST00000569950 ZNF876PQ49A33 203 aa6.51□□□□□ -1.37
VPS35-211ENST00000569950 PIK3CD-AS1Q5SR53 167 aa6.51□□□□□ -1.37
VPS35-211ENST00000569950 CFAP126Q5VTH2 177 aa6.51□□□□□ -1.37
VPS35-211ENST00000569950 Q6ZSN1 163 aa6.51□□□□□ -1.37
VPS35-211ENST00000569950 VSIG2Q96IQ7 327 aa6.51□□□□□ -1.37
VPS35-211ENST00000569950 SAMD10Q9BYL1 202 aa6.51□□□□□ -1.37
VPS35-211ENST00000569950 BIN3Q9NQY0 253 aa6.51□□□□□ -1.37
VPS35-211ENST00000569950 KIF25-AS1Q9Y6Z4 181 aa6.51□□□□□ -1.37
VPS35-211ENST00000569950 CRYGDP07320 174 aa6.5□□□□□ -1.37
VPS35-211ENST00000569950 RPS20P60866 119 aaKnown RBP6.5□□□□□ -1.37
VPS35-211ENST00000569950 RNF212Q495C1 297 aa6.5□□□□□ -1.37
VPS35-211ENST00000569950 CASC10Q5T4H9 136 aa6.5□□□□□ -1.37
VPS35-211ENST00000569950 LCE2AQ5TA79 106 aaPredicted RBP6.5□□□□□ -1.37
VPS35-211ENST00000569950 ZFAND6Q6FIF0 208 aa6.5□□□□□ -1.37
VPS35-211ENST00000569950 CEMP1Q6PRD7 247 aaPredicted RBP6.5□□□□□ -1.37
VPS35-211ENST00000569950 LYZL1Q6UWQ5 148 aa6.5□□□□□ -1.37
VPS35-211ENST00000569950 FER1L6-AS1Q8NA97 138 aa6.5□□□□□ -1.37
VPS35-211ENST00000569950 OR10G8Q8NGN5 311 aa6.5□□□□□ -1.37
VPS35-211ENST00000569950 TSKUQ8WUA8 353 aa6.5□□□□□ -1.37
VPS35-211ENST00000569950 DAZAP1Q96EP5 407 aaKnown RBP6.5□□□□□ -1.37
VPS35-211ENST00000569950 Q9UF83 564 aa6.5□□□□□ -1.37
VPS35-211ENST00000569950 DEFB131BA0A096LNP1 70 aa6.49□□□□□ -1.37
VPS35-211ENST00000569950 TRAV10A0A0B4J240 114 aa6.49□□□□□ -1.37
VPS35-211ENST00000569950 TRAV4A0A0B4J268 109 aa6.49□□□□□ -1.37
VPS35-211ENST00000569950 SMIM27A0A1W2PRY6 76 aa6.49□□□□□ -1.37
VPS35-211ENST00000569950 F8W036 122 aa6.49□□□□□ -1.37
VPS35-211ENST00000569950 IGHV3-53P01767 116 aa6.49□□□□□ -1.37
VPS35-211ENST00000569950 ATP5G1P05496 136 aa6.49□□□□□ -1.37
VPS35-211ENST00000569950 S100A4P26447 101 aaKnown RBP6.49□□□□□ -1.37
VPS35-211ENST00000569950 PNRC1Q12796 327 aaPredicted RBP6.49□□□□□ -1.37
VPS35-211ENST00000569950 NDUFAF3Q9BU61 184 aa6.49□□□□□ -1.37
VPS35-211ENST00000569950 APLNQ9ULZ1 77 aa6.49□□□□□ -1.37
VPS35-211ENST00000569950 KMT2AQ03164 3969 aa6.48□□□□□ -1.37
VPS35-211ENST00000569950 RYR2Q92736 4967 aa6.48□□□□□ -1.37
VPS35-211ENST00000569950 FAM231BA6NCW3 169 aa6.48□□□□□ -1.37
VPS35-211ENST00000569950 HIGD1CA8MV81 97 aa6.48□□□□□ -1.37
VPS35-211ENST00000569950 A8MWL6 223 aa6.48□□□□□ -1.37
VPS35-211ENST00000569950 C3orf84H3BNL1 204 aa6.48□□□□□ -1.37
VPS35-211ENST00000569950 GATA1P15976 413 aaPredicted RBP6.48□□□□□ -1.37
VPS35-211ENST00000569950 WDR73Q6P4I2 378 aa6.48□□□□□ -1.37
VPS35-211ENST00000569950 NUP35Q8NFH5 326 aa6.48□□□□□ -1.37
VPS35-211ENST00000569950 GFRA4Q9GZZ7 299 aa6.48□□□□□ -1.37
VPS35-211ENST00000569950 PHLDA3Q9Y5J5 127 aa6.48□□□□□ -1.37
VPS35-211ENST00000569950 TRGV2A0A075B6R0 118 aa6.47□□□□□ -1.37
VPS35-211ENST00000569950 A0A1W2PPQ1 181 aa6.47□□□□□ -1.37
VPS35-211ENST00000569950 M0R381 172 aa6.47□□□□□ -1.37
VPS35-211ENST00000569950 LINC00694P0DN24 101 aa6.47□□□□□ -1.37
VPS35-211ENST00000569950 NTF3P20783 257 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms