RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, human

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-223	ENST00000568488	C14orf178	Q8N769	122 aa	Predicted RBP	10.29	□□□□□ -0.76
CLK3-223	ENST00000568488	CMTM2	Q8TAZ6	248 aa		10.29	□□□□□ -0.76
CLK3-223	ENST00000568488	C9orf85	Q96MD7	179 aa		10.29	□□□□□ -0.76
CLK3-223	ENST00000568488	SMIM18	P0DKX4	95 aa		10.28	□□□□□ -0.76
CLK3-223	ENST00000568488	LGALSL	Q3ZCW2	172 aa	Predicted RBP	10.28	□□□□□ -0.76
CLK3-223	ENST00000568488	ENHO	Q6UWT2	76 aa		10.28	□□□□□ -0.76
CLK3-223	ENST00000568488	ZFP2	Q6ZN57	461 aa		10.28	□□□□□ -0.76
CLK3-223	ENST00000568488	GOLT1A	Q6ZVE7	132 aa		10.28	□□□□□ -0.76
CLK3-223	ENST00000568488	TMEM252	Q8N6L7	170 aa		10.28	□□□□□ -0.76
CLK3-223	ENST00000568488	THAP6	Q8TBB0	222 aa		10.28	□□□□□ -0.76
CLK3-223	ENST00000568488	CHCHD7	Q9BUK0	85 aa		10.28	□□□□□ -0.76
CLK3-223	ENST00000568488	SLIRP	Q9GZT3	109 aa	Known RBP	10.28	□□□□□ -0.76
CLK3-223	ENST00000568488	C11orf1	Q9H5F2	150 aa		10.28	□□□□□ -0.76
CLK3-223	ENST00000568488	C11orf21	Q9P2W6	132 aa		10.28	□□□□□ -0.76
CLK3-223	ENST00000568488	RPL19	P84098	196 aa	Known RBP	10.27	□□□□□ -0.77
CLK3-223	ENST00000568488	TMEM75	Q8N9X5	138 aa		10.27	□□□□□ -0.77
CLK3-223	ENST00000568488	MITD1	Q8WV92	249 aa		10.27	□□□□□ -0.77
CLK3-223	ENST00000568488	LYRM2	Q9NU23	88 aa	Predicted RBP	10.27	□□□□□ -0.77
CLK3-223	ENST00000568488		A8MWV9	139 aa		10.26	□□□□□ -0.77
CLK3-223	ENST00000568488	PHOX2A	O14813	284 aa		10.26	□□□□□ -0.77
CLK3-223	ENST00000568488	S100A10	P60903	97 aa		10.26	□□□□□ -0.77
CLK3-223	ENST00000568488	C15orf54	Q8N8G6	183 aa		10.26	□□□□□ -0.77
CLK3-223	ENST00000568488	PTH2	Q96A98	100 aa		10.26	□□□□□ -0.77
CLK3-223	ENST00000568488	SGK494	Q96LW2	274 aa		10.26	□□□□□ -0.77
CLK3-223	ENST00000568488	LINC00479	Q96M42	142 aa		10.26	□□□□□ -0.77
CLK3-223	ENST00000568488		A0A087WYN8	130 aa		10.25	□□□□□ -0.77
CLK3-223	ENST00000568488		A0A0J9YXV3	536 aa		10.25	□□□□□ -0.77
CLK3-223	ENST00000568488	FAM74A1	Q5RGS3	127 aa		10.25	□□□□□ -0.77
CLK3-223	ENST00000568488	OR2G3	Q8NGZ4	309 aa		10.25	□□□□□ -0.77
CLK3-223	ENST00000568488	JPT2	Q9H910	190 aa		10.25	□□□□□ -0.77
CLK3-223	ENST00000568488	OTOR	Q9NRC9	128 aa		10.25	□□□□□ -0.77
CLK3-223	ENST00000568488	KIF25-AS1	Q9Y6Z4	181 aa		10.25	□□□□□ -0.77
CLK3-223	ENST00000568488		V9GYH0	126 aa		10.25	□□□□□ -0.77
CLK3-223	ENST00000568488	KRTAP9-6	A0A140TA67	174 aa		10.24	□□□□□ -0.77
CLK3-223	ENST00000568488	TAAR5	O14804	337 aa		10.24	□□□□□ -0.77
CLK3-223	ENST00000568488	CHTF8	P0CG12	524 aa		10.24	□□□□□ -0.77
CLK3-223	ENST00000568488	RNASE3	P12724	160 aa	Known RBP	10.24	□□□□□ -0.77
CLK3-223	ENST00000568488	ZNF80	P51504	273 aa	Predicted RBP	10.24	□□□□□ -0.77
CLK3-223	ENST00000568488	KRTAP10-8	P60410	259 aa		10.24	□□□□□ -0.77
CLK3-223	ENST00000568488	C7orf33	Q8WU49	177 aa		10.24	□□□□□ -0.77
CLK3-223	ENST00000568488	NDFIP1	Q9BT67	221 aa		10.24	□□□□□ -0.77
CLK3-223	ENST00000568488	NAP1L6	A6NFF2	107 aa		10.23	□□□□□ -0.77
CLK3-223	ENST00000568488	ANG	P03950	147 aa	Known RBP	10.23	□□□□□ -0.77
CLK3-223	ENST00000568488	CIRBP	Q14011	172 aa	Known RBP	10.23	□□□□□ -0.77
CLK3-223	ENST00000568488	WDR73	Q6P4I2	378 aa		10.23	□□□□□ -0.77
CLK3-223	ENST00000568488	MBD2	Q9UBB5	411 aa		10.23	□□□□□ -0.77
CLK3-223	ENST00000568488	MUC2	Q02817	5179 aa		10.22	□□□□□ -0.77
CLK3-223	ENST00000568488	EIF3G	O75821	320 aa	Known RBP eCLIP	10.22	□□□□□ -0.77
CLK3-223	ENST00000568488	GCG	P01275	180 aa		10.22	□□□□□ -0.77
CLK3-223	ENST00000568488	S100A4	P26447	101 aa	Known RBP	10.22	□□□□□ -0.77
CLK3-223	ENST00000568488	GNG5	P63218	68 aa		10.22	□□□□□ -0.77
CLK3-223	ENST00000568488	RNF185	Q96GF1	192 aa		10.22	□□□□□ -0.77
CLK3-223	ENST00000568488	NHLH2	Q02577	135 aa		10.21	□□□□□ -0.77
CLK3-223	ENST00000568488	OR10G7	Q8NGN6	311 aa		10.21	□□□□□ -0.77
CLK3-223	ENST00000568488	OR5C1	Q8NGR4	320 aa		10.21	□□□□□ -0.77
CLK3-223	ENST00000568488	GTSF1	Q8WW33	167 aa		10.21	□□□□□ -0.77
CLK3-223	ENST00000568488	KCNIP2	Q9NS61	270 aa		10.21	□□□□□ -0.77
CLK3-223	ENST00000568488	IGHV3-64	A0A075B6Q5	118 aa		10.2	□□□□□ -0.78
CLK3-223	ENST00000568488	RAB32	Q13637	225 aa		10.2	□□□□□ -0.78
CLK3-223	ENST00000568488	MPV17L2	Q567V2	206 aa		10.2	□□□□□ -0.78
CLK3-223	ENST00000568488	KHDC3L	Q587J8	217 aa		10.2	□□□□□ -0.78
CLK3-223	ENST00000568488	FAM74A4	Q5TZK3	123 aa		10.2	□□□□□ -0.78
CLK3-223	ENST00000568488	UFSP1	Q6NVU6	142 aa		10.2	□□□□□ -0.78
CLK3-223	ENST00000568488	TMBIM6	P55061	237 aa		10.19	□□□□□ -0.78
CLK3-223	ENST00000568488	TAS2R45	P59539	299 aa		10.19	□□□□□ -0.78
CLK3-223	ENST00000568488	MIA	Q16674	131 aa		10.19	□□□□□ -0.78
CLK3-223	ENST00000568488	REG3G	Q6UW15	175 aa		10.19	□□□□□ -0.78
CLK3-223	ENST00000568488	CLRN3	Q8NCR9	226 aa		10.19	□□□□□ -0.78
CLK3-223	ENST00000568488	MRPS26	Q9BYN8	205 aa	Known RBP	10.19	□□□□□ -0.78
CLK3-223	ENST00000568488	OR5AC2	Q9NZP5	309 aa		10.19	□□□□□ -0.78
CLK3-223	ENST00000568488		A0A087WWL8	130 aa		10.18	□□□□□ -0.78
CLK3-223	ENST00000568488	hDV102S1	A0JD36	115 aa		10.18	□□□□□ -0.78
CLK3-223	ENST00000568488	C17orf112	F2Z3M2	114 aa		10.18	□□□□□ -0.78
CLK3-223	ENST00000568488	S100A5	P33763	92 aa		10.18	□□□□□ -0.78
CLK3-223	ENST00000568488	TRIQK	Q629K1	86 aa		10.18	□□□□□ -0.78
CLK3-223	ENST00000568488	CLPSL2	Q6UWE3	100 aa		10.18	□□□□□ -0.78
CLK3-223	ENST00000568488	SPACA4	Q8TDM5	124 aa		10.18	□□□□□ -0.78
CLK3-223	ENST00000568488	WDR61	Q9GZS3	305 aa	Known RBP	10.18	□□□□□ -0.78
CLK3-223	ENST00000568488	CENPX	A8MT69	81 aa		10.17	□□□□□ -0.78
CLK3-223	ENST00000568488	RHOD	O00212	210 aa		10.17	□□□□□ -0.78
CLK3-223	ENST00000568488	NOL3	O60936	208 aa	Known RBP	10.17	□□□□□ -0.78
CLK3-223	ENST00000568488	PRR3	P79522	188 aa	Known RBP	10.17	□□□□□ -0.78
CLK3-223	ENST00000568488	RPL36A	P83881	106 aa	Known RBP	10.17	□□□□□ -0.78
CLK3-223	ENST00000568488	PIK3CD-AS1	Q5SR53	167 aa		10.17	□□□□□ -0.78
CLK3-223	ENST00000568488	ARL6IP6	Q8N6S5	226 aa		10.17	□□□□□ -0.78
CLK3-223	ENST00000568488	RPL36AL	Q969Q0	106 aa	Known RBP	10.17	□□□□□ -0.78
CLK3-223	ENST00000568488	PLAC8	Q9NZF1	115 aa		10.17	□□□□□ -0.78
CLK3-223	ENST00000568488	TRBV6-8	A0A0A6YYG3	113 aa		10.16	□□□□□ -0.78
CLK3-223	ENST00000568488		H3BMQ9	156 aa		10.16	□□□□□ -0.78
CLK3-223	ENST00000568488	CNBP	P62633	177 aa	Known RBP	10.16	□□□□□ -0.78
CLK3-223	ENST00000568488	ZFP69	Q49AA0	526 aa		10.16	□□□□□ -0.78
CLK3-223	ENST00000568488	SMUG1	Q53HV7	270 aa		10.16	□□□□□ -0.78
CLK3-223	ENST00000568488	CHCHD5	Q9BSY4	110 aa		10.16	□□□□□ -0.78
CLK3-223	ENST00000568488	AP5S1	Q9NUS5	200 aa		10.16	□□□□□ -0.78
CLK3-223	ENST00000568488	PSG8	Q9UQ74	426 aa		10.16	□□□□□ -0.78
CLK3-223	ENST00000568488	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	10.15	□□□□□ -0.78
CLK3-223	ENST00000568488	IGKV3D-20	A0A0C4DH25	116 aa		10.15	□□□□□ -0.78
CLK3-223	ENST00000568488	BTC	P35070	178 aa		10.15	□□□□□ -0.78
CLK3-223	ENST00000568488	UBE2D3	P61077	147 aa		10.15	□□□□□ -0.78
CLK3-223	ENST00000568488	UBE2D2	P62837	147 aa		10.15	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms