RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 PGPEP1LA6NFU8 196 aa10.8□□□□□ -0.68
CLN3-229ENST00000567963 GGTLC3B5MD39 225 aa10.8□□□□□ -0.68
CLN3-229ENST00000567963 RHOHQ15669 191 aa10.8□□□□□ -0.68
CLN3-229ENST00000567963 ZFP69Q49AA0 526 aa10.8□□□□□ -0.68
CLN3-229ENST00000567963 SMUG1Q53HV7 270 aa10.8□□□□□ -0.68
CLN3-229ENST00000567963 PRNTQ86SH4 94 aa10.8□□□□□ -0.68
CLN3-229ENST00000567963 PTH2Q96A98 100 aa10.8□□□□□ -0.68
CLN3-229ENST00000567963 SH3BGRL3Q9H299 93 aa10.8□□□□□ -0.68
CLN3-229ENST00000567963 BOLA1Q9Y3E2 137 aa10.8□□□□□ -0.68
CLN3-229ENST00000567963 IBA57-AS1B1ANH7 110 aa10.79□□□□□ -0.68
CLN3-229ENST00000567963 RNASE3P12724 160 aaKnown RBP10.79□□□□□ -0.68
CLN3-229ENST00000567963 GCSHP23434 173 aa10.79□□□□□ -0.68
CLN3-229ENST00000567963 ZNF345Q14585 488 aa10.79□□□□□ -0.68
CLN3-229ENST00000567963 OR10J3Q5JRS4 329 aa10.79□□□□□ -0.68
CLN3-229ENST00000567963 ZNF506Q5JVG8 444 aa10.79□□□□□ -0.68
CLN3-229ENST00000567963 SAPCD1Q5SSQ6 148 aa10.79□□□□□ -0.68
CLN3-229ENST00000567963 CYB561D1Q8N8Q1 229 aa10.79□□□□□ -0.68
CLN3-229ENST00000567963 ACTR3CQ9C0K3 210 aaPredicted RBP10.79□□□□□ -0.68
CLN3-229ENST00000567963 LRCOL1A6NCL2 159 aa10.78□□□□□ -0.68
CLN3-229ENST00000567963 PSCAO43653 123 aa10.78□□□□□ -0.68
CLN3-229ENST00000567963 MGST1P10620 155 aaKnown RBP10.78□□□□□ -0.68
CLN3-229ENST00000567963 A0A1W2PRE2 83 aa10.77□□□□□ -0.69
CLN3-229ENST00000567963 LELP1Q5T871 98 aa10.77□□□□□ -0.69
CLN3-229ENST00000567963 LINC00479Q96M42 142 aa10.77□□□□□ -0.69
CLN3-229ENST00000567963 GTSF1LQ9H1H1 148 aa10.77□□□□□ -0.69
CLN3-229ENST00000567963 ARPC5O15511 151 aa10.76□□□□□ -0.69
CLN3-229ENST00000567963 ATP6V0E2Q8NHE4 81 aa10.76□□□□□ -0.69
CLN3-229ENST00000567963 IGKV3D-20A0A0C4DH25 116 aa10.75□□□□□ -0.69
CLN3-229ENST00000567963 Q5VSD8 79 aa10.75□□□□□ -0.69
CLN3-229ENST00000567963 INO80EQ8NBZ0 244 aaPredicted RBP10.75□□□□□ -0.69
CLN3-229ENST00000567963 FRZBQ92765 325 aa10.75□□□□□ -0.69
CLN3-229ENST00000567963 IGLV5-52A0A0A0MRZ9 124 aa10.74□□□□□ -0.69
CLN3-229ENST00000567963 TRAV34A0A0B4J273 112 aa10.74□□□□□ -0.69
CLN3-229ENST00000567963 IGHV3-30P01768 117 aa10.74□□□□□ -0.69
CLN3-229ENST00000567963 IGHV3-33P01772 117 aa10.74□□□□□ -0.69
CLN3-229ENST00000567963 INAFM2P0DMQ5 153 aa10.74□□□□□ -0.69
CLN3-229ENST00000567963 IGHV3-30-3P0DP02 117 aa10.74□□□□□ -0.69
CLN3-229ENST00000567963 IGHV3-30-5P0DP03 117 aa10.74□□□□□ -0.69
CLN3-229ENST00000567963 RPL7L1Q6DKI1 246 aaKnown RBP10.74□□□□□ -0.69
CLN3-229ENST00000567963 Q6ZSN1 163 aa10.74□□□□□ -0.69
CLN3-229ENST00000567963 KCNRGQ8N5I3 272 aa10.74□□□□□ -0.69
CLN3-229ENST00000567963 NTN5Q8WTR8 489 aaPredicted RBP10.74□□□□□ -0.69
CLN3-229ENST00000567963 Q9HAA7 133 aa10.74□□□□□ -0.69
CLN3-229ENST00000567963 ARL2-SNX15V9GYD0 113 aa10.74□□□□□ -0.69
CLN3-229ENST00000567963 VPS13BQ7Z7G8 4022 aa10.74□□□□□ -0.69
CLN3-229ENST00000567963 FABP5P3A8MUU1 101 aa10.74□□□□□ -0.69
CLN3-229ENST00000567963 ZNF726P1Q15940 193 aa10.74□□□□□ -0.69
CLN3-229ENST00000567963 PIK3CD-AS1Q5SR53 167 aa10.74□□□□□ -0.69
CLN3-229ENST00000567963 ZFP2Q6ZN57 461 aa10.74□□□□□ -0.69
CLN3-229ENST00000567963 C9orf62Q8N4C0 152 aa10.74□□□□□ -0.69
CLN3-229ENST00000567963 PARLQ9H300 379 aa10.74□□□□□ -0.69
CLN3-229ENST00000567963 HERC1Q15751 4861 aa10.73□□□□□ -0.69
CLN3-229ENST00000567963 A0A0D9SG52 128 aa10.73□□□□□ -0.69
CLN3-229ENST00000567963 A8MWV9 139 aa10.73□□□□□ -0.69
CLN3-229ENST00000567963 SMR3BP02814 79 aaPredicted RBP10.73□□□□□ -0.69
CLN3-229ENST00000567963 S100A4P26447 101 aaKnown RBP10.73□□□□□ -0.69
CLN3-229ENST00000567963 LGALSLQ3ZCW2 172 aaPredicted RBP10.73□□□□□ -0.69
CLN3-229ENST00000567963 Q8N814 137 aa10.73□□□□□ -0.69
CLN3-229ENST00000567963 BORCS7-ASMTA0A0B4J1R7 106 aa10.72□□□□□ -0.69
CLN3-229ENST00000567963 CTXND1A0A1B0GTU2 59 aa10.72□□□□□ -0.69
CLN3-229ENST00000567963 IFNA7P01567 189 aa10.72□□□□□ -0.69
CLN3-229ENST00000567963 UBE2G2P60604 165 aa10.72□□□□□ -0.69
CLN3-229ENST00000567963 LAGE3Q14657 143 aa10.72□□□□□ -0.69
CLN3-229ENST00000567963 LINC00694P0DN24 101 aa10.71□□□□□ -0.69
CLN3-229ENST00000567963 ASIPP42127 132 aa10.71□□□□□ -0.69
CLN3-229ENST00000567963 UFSP1Q6NVU6 142 aa10.71□□□□□ -0.69
CLN3-229ENST00000567963 TMEM70Q9BUB7 260 aa10.71□□□□□ -0.69
CLN3-229ENST00000567963 NKX6-2Q9C056 277 aaPredicted RBP10.71□□□□□ -0.69
CLN3-229ENST00000567963 JPT2Q9H910 190 aa10.71□□□□□ -0.69
CLN3-229ENST00000567963 IL36BQ9NZH7 164 aa10.71□□□□□ -0.69
CLN3-229ENST00000567963 GAGE12JA6NER3 117 aa10.7□□□□□ -0.7
CLN3-229ENST00000567963 FAM74A7A6NL05 159 aa10.7□□□□□ -0.7
CLN3-229ENST00000567963 PEX7O00628 323 aa10.7□□□□□ -0.7
CLN3-229ENST00000567963 BCL2L11O43521 198 aa10.7□□□□□ -0.7
CLN3-229ENST00000567963 CRIP1P50238 77 aa10.7□□□□□ -0.7
CLN3-229ENST00000567963 NKX2-5P52952 324 aaPredicted RBP10.7□□□□□ -0.7
CLN3-229ENST00000567963 GAGE1Q13065 139 aa10.7□□□□□ -0.7
CLN3-229ENST00000567963 GAGE4Q13068 117 aa10.7□□□□□ -0.7
CLN3-229ENST00000567963 GAGE5Q13069 117 aa10.7□□□□□ -0.7
CLN3-229ENST00000567963 GAGE13Q4V321 117 aa10.7□□□□□ -0.7
CLN3-229ENST00000567963 Q8N3U1 123 aa10.7□□□□□ -0.7
CLN3-229ENST00000567963 HIST1H2BAQ96A08 127 aa10.7□□□□□ -0.7
CLN3-229ENST00000567963 Q9UF83 564 aa10.7□□□□□ -0.7
CLN3-229ENST00000567963 B4DEV8 164 aa10.69□□□□□ -0.7
CLN3-229ENST00000567963 FGF8P55075 233 aaPredicted RBP10.69□□□□□ -0.7
CLN3-229ENST00000567963 HAMPP81172 84 aa10.69□□□□□ -0.7
CLN3-229ENST00000567963 DNLZQ5SXM8 178 aa10.69□□□□□ -0.7
CLN3-229ENST00000567963 DMRTA1Q5VZB9 504 aa10.69□□□□□ -0.7
CLN3-229ENST00000567963 TMUB2Q71RG4 321 aa10.69□□□□□ -0.7
CLN3-229ENST00000567963 Q86TA4 180 aa10.69□□□□□ -0.7
CLN3-229ENST00000567963 TM2D2Q9BX73 214 aa10.69□□□□□ -0.7
CLN3-229ENST00000567963 SAMD10Q9BYL1 202 aa10.69□□□□□ -0.7
CLN3-229ENST00000567963 CYTL1Q9NRR1 136 aa10.69□□□□□ -0.7
CLN3-229ENST00000567963 SRRM2Q9UQ35 2752 aaKnown RBP10.69□□□□□ -0.7
CLN3-229ENST00000567963 KRBOX1C9JBD0 128 aa10.68□□□□□ -0.7
CLN3-229ENST00000567963 AKR1C8PQ5T2L2 129 aa10.68□□□□□ -0.7
CLN3-229ENST00000567963 COX8CQ7Z4L0 72 aa10.68□□□□□ -0.7
CLN3-229ENST00000567963 ZC2HC1AQ96GY0 325 aa10.68□□□□□ -0.7
CLN3-229ENST00000567963 KANTRA0A1W2PQU2 76 aa10.68□□□□□ -0.7
CLN3-229ENST00000567963 FAM229AH3BQW9 127 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms