RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 OCC1Q8TAD7 63 aa13.68□□□□□ -0.22
CLN3-225ENST00000566824 A0A0J9YY99 117 aa13.67□□□□□ -0.22
CLN3-225ENST00000566824 C19orf71A6NCJ1 209 aa13.67□□□□□ -0.22
CLN3-225ENST00000566824 ARMS2P0C7Q2 107 aa13.67□□□□□ -0.22
CLN3-225ENST00000566824 S100A4P26447 101 aaKnown RBP13.67□□□□□ -0.22
CLN3-225ENST00000566824 ZNF876PQ49A33 203 aa13.67□□□□□ -0.22
CLN3-225ENST00000566824 FAM210BQ96KR6 192 aa13.67□□□□□ -0.22
CLN3-225ENST00000566824 TRAV26-1A0A087WT03 109 aa13.66□□□□□ -0.22
CLN3-225ENST00000566824 TCTAP57738 103 aa13.66□□□□□ -0.22
CLN3-225ENST00000566824 FHL2Q14192 279 aa13.66□□□□□ -0.22
CLN3-225ENST00000566824 VSIG2Q96IQ7 327 aa13.66□□□□□ -0.22
CLN3-225ENST00000566824 IL36BQ9NZH7 164 aa13.66□□□□□ -0.22
CLN3-225ENST00000566824 LY6G6CO95867 125 aa13.65□□□□□ -0.22
CLN3-225ENST00000566824 GZMBP10144 247 aa13.64□□□□□ -0.23
CLN3-225ENST00000566824 SMIM12Q96EX1 92 aa13.64□□□□□ -0.23
CLN3-225ENST00000566824 JPT2Q9H910 190 aa13.64□□□□□ -0.23
CLN3-225ENST00000566824 SCRT2Q9NQ03 307 aa13.64□□□□□ -0.23
CLN3-225ENST00000566824 TRAV4A0A0B4J268 109 aa13.64□□□□□ -0.23
CLN3-225ENST00000566824 RS1O15537 224 aa13.64□□□□□ -0.23
CLN3-225ENST00000566824 CFAP126Q5VTH2 177 aa13.64□□□□□ -0.23
CLN3-225ENST00000566824 DMRTA1Q5VZB9 504 aa13.64□□□□□ -0.23
CLN3-225ENST00000566824 PTH2Q96A98 100 aa13.64□□□□□ -0.23
CLN3-225ENST00000566824 MUC21A0A0G2JKD1 596 aa13.63□□□□□ -0.23
CLN3-225ENST00000566824 MUC21A0A140T8X8 626 aa13.63□□□□□ -0.23
CLN3-225ENST00000566824 NDUFS6O75380 124 aaKnown RBP13.63□□□□□ -0.23
CLN3-225ENST00000566824 NUDT3O95989 172 aa13.63□□□□□ -0.23
CLN3-225ENST00000566824 LGALS9CQ6DKI2 356 aa13.63□□□□□ -0.23
CLN3-225ENST00000566824 NUDT10Q8NFP7 164 aa13.63□□□□□ -0.23
CLN3-225ENST00000566824 OR4C5Q8NGB2 326 aa13.63□□□□□ -0.23
CLN3-225ENST00000566824 NUDT11Q96G61 164 aa13.63□□□□□ -0.23
CLN3-225ENST00000566824 SMIM7Q9BQ49 75 aa13.63□□□□□ -0.23
CLN3-225ENST00000566824 RNASE7Q9H1E1 156 aaKnown RBP13.63□□□□□ -0.23
CLN3-225ENST00000566824 IGHV3-73A0A0B4J1V6 119 aa13.62□□□□□ -0.23
CLN3-225ENST00000566824 OR2D3Q8NGH3 330 aa13.62□□□□□ -0.23
CLN3-225ENST00000566824 CRYBA4P53673 196 aa13.61□□□□□ -0.23
CLN3-225ENST00000566824 OR10AG1Q8NH19 301 aa13.61□□□□□ -0.23
CLN3-225ENST00000566824 DAZAP1Q96EP5 407 aaKnown RBP13.61□□□□□ -0.23
CLN3-225ENST00000566824 SAMD10Q9BYL1 202 aa13.61□□□□□ -0.23
CLN3-225ENST00000566824 DNAH6Q9C0G6 4158 aa13.6□□□□□ -0.23
CLN3-225ENST00000566824 TRGV4A0A0C4DH28 118 aa13.6□□□□□ -0.23
CLN3-225ENST00000566824 ZNF727A8MUV8 499 aa13.6□□□□□ -0.23
CLN3-225ENST00000566824 M0R381 172 aa13.6□□□□□ -0.23
CLN3-225ENST00000566824 CXCL1P09341 107 aa13.6□□□□□ -0.23
CLN3-225ENST00000566824 PEA15Q15121 130 aa13.6□□□□□ -0.23
CLN3-225ENST00000566824 CLLU1Q5K131 121 aa13.6□□□□□ -0.23
CLN3-225ENST00000566824 C15orf53Q8NAA6 179 aa13.6□□□□□ -0.23
CLN3-225ENST00000566824 HHLA3Q9XRX5 114 aa13.6□□□□□ -0.23
CLN3-225ENST00000566824 KMT2AQ03164 3969 aa13.59□□□□□ -0.23
CLN3-225ENST00000566824 PAX4O43316 350 aa13.59□□□□□ -0.23
CLN3-225ENST00000566824 P01737 135 aa13.59□□□□□ -0.23
CLN3-225ENST00000566824 RAB14P61106 215 aa13.59□□□□□ -0.23
CLN3-225ENST00000566824 Q6ZSN1 163 aa13.59□□□□□ -0.23
CLN3-225ENST00000566824 SSBP4Q9BWG4 385 aaPredicted RBP13.59□□□□□ -0.23
CLN3-225ENST00000566824 PRO0255Q9UI72 69 aa13.59□□□□□ -0.23
CLN3-225ENST00000566824 PHLDA3Q9Y5J5 127 aa13.59□□□□□ -0.23
CLN3-225ENST00000566824 A0A096LPF7 62 aa13.58□□□□□ -0.24
CLN3-225ENST00000566824 SNAI2O43623 268 aa13.58□□□□□ -0.24
CLN3-225ENST00000566824 IGLC6P0CF74 106 aa13.58□□□□□ -0.24
CLN3-225ENST00000566824 MED14OSP0DP75 135 aa13.58□□□□□ -0.24
CLN3-225ENST00000566824 SSTP61278 116 aa13.58□□□□□ -0.24
CLN3-225ENST00000566824 UFSP1Q6NVU6 142 aa13.58□□□□□ -0.24
CLN3-225ENST00000566824 LINC01551Q86U37 167 aa13.58□□□□□ -0.24
CLN3-225ENST00000566824 BIN3Q9NQY0 253 aa13.58□□□□□ -0.24
CLN3-225ENST00000566824 LOC100131303A0A0U1RQF7 123 aa13.57□□□□□ -0.24
CLN3-225ENST00000566824 GATA1P15976 413 aaPredicted RBP13.57□□□□□ -0.24
CLN3-225ENST00000566824 LY96Q9Y6Y9 160 aa13.57□□□□□ -0.24
CLN3-225ENST00000566824 H3BNG1 76 aa13.56□□□□□ -0.24
CLN3-225ENST00000566824 NXPH4O95158 308 aa13.56□□□□□ -0.24
CLN3-225ENST00000566824 OR5AL1P0C617 328 aa13.56□□□□□ -0.24
CLN3-225ENST00000566824 PIK3CD-AS1Q5SR53 167 aa13.56□□□□□ -0.24
CLN3-225ENST00000566824 RPP21Q9H633 154 aaKnown RBP13.56□□□□□ -0.24
CLN3-225ENST00000566824 A0A087WWL8 130 aa13.55□□□□□ -0.24
CLN3-225ENST00000566824 RPS20P60866 119 aaKnown RBP13.55□□□□□ -0.24
CLN3-225ENST00000566824 ZFP82Q8N141 532 aa13.55□□□□□ -0.24
CLN3-225ENST00000566824 SYT8Q8NBV8 401 aa13.55□□□□□ -0.24
CLN3-225ENST00000566824 SFRP2Q96HF1 295 aa13.55□□□□□ -0.24
CLN3-225ENST00000566824 TPPP3Q9BW30 176 aa13.55□□□□□ -0.24
CLN3-225ENST00000566824 A8MWV9 139 aa13.54□□□□□ -0.24
CLN3-225ENST00000566824 CRYGDP07320 174 aa13.54□□□□□ -0.24
CLN3-225ENST00000566824 P0DMU3 169 aa13.54□□□□□ -0.24
CLN3-225ENST00000566824 FAM231AP0DMU4 169 aa13.54□□□□□ -0.24
CLN3-225ENST00000566824 FAM231CP0DMU5 169 aa13.54□□□□□ -0.24
CLN3-225ENST00000566824 TMEM241Q24JQ0 296 aa13.54□□□□□ -0.24
CLN3-225ENST00000566824 SLC25A29Q8N8R3 303 aa13.54□□□□□ -0.24
CLN3-225ENST00000566824 FER1L6-AS1Q8NA97 138 aa13.54□□□□□ -0.24
CLN3-225ENST00000566824 SMDT1Q9H4I9 107 aa13.54□□□□□ -0.24
CLN3-225ENST00000566824 MSRB1Q9NZV6 116 aa13.54□□□□□ -0.24
CLN3-225ENST00000566824 Q9UF83 564 aa13.54□□□□□ -0.24
CLN3-225ENST00000566824 GYPEP15421 78 aa13.53□□□□□ -0.24
CLN3-225ENST00000566824 RPL23P62829 140 aaKnown RBP13.53□□□□□ -0.24
CLN3-225ENST00000566824 SLAQ13239 276 aa13.53□□□□□ -0.24
CLN3-225ENST00000566824 ESRGQ1W209 222 aa13.53□□□□□ -0.24
CLN3-225ENST00000566824 FAM231DQ6ZW35 169 aa13.53□□□□□ -0.24
CLN3-225ENST00000566824 LINC00588Q9Y4M8 146 aa13.53□□□□□ -0.24
CLN3-225ENST00000566824 GATCO43716 136 aaKnown RBP13.52□□□□□ -0.25
CLN3-225ENST00000566824 FAM74A3Q4VXF1 159 aa13.52□□□□□ -0.25
CLN3-225ENST00000566824 LYZL1Q6UWQ5 148 aa13.52□□□□□ -0.25
CLN3-225ENST00000566824 GTSF1Q8WW33 167 aa13.52□□□□□ -0.25
CLN3-225ENST00000566824 ICOSQ9Y6W8 199 aa13.52□□□□□ -0.25
CLN3-225ENST00000566824 K7EQD1 137 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms