RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 SRRM2Q9UQ35 2752 aaKnown RBP12.57□□□□□ -0.4
CLN3-218ENST00000565688 IGHV3-73A0A0B4J1V6 119 aa12.56□□□□□ -0.4
CLN3-218ENST00000565688 A0A1W2PRE2 83 aa12.56□□□□□ -0.4
CLN3-218ENST00000565688 PGPEP1LA6NFU8 196 aa12.56□□□□□ -0.4
CLN3-218ENST00000565688 INAFM2P0DMQ5 153 aa12.56□□□□□ -0.4
CLN3-218ENST00000565688 Q5VSD8 79 aa12.56□□□□□ -0.4
CLN3-218ENST00000565688 GTSF1LQ9H1H1 148 aa12.56□□□□□ -0.4
CLN3-218ENST00000565688 DMBT1Q9UGM3 2413 aaPredicted RBP12.55□□□□□ -0.4
CLN3-218ENST00000565688 IGLV5-52A0A0A0MRZ9 124 aa12.55□□□□□ -0.4
CLN3-218ENST00000565688 LRCOL1A6NCL2 159 aa12.55□□□□□ -0.4
CLN3-218ENST00000565688 PTTG1O95997 202 aa12.55□□□□□ -0.4
CLN3-218ENST00000565688 RNASE3P12724 160 aaKnown RBP12.55□□□□□ -0.4
CLN3-218ENST00000565688 PIK3CD-AS1Q5SR53 167 aa12.55□□□□□ -0.4
CLN3-218ENST00000565688 ATP6V0E2Q8NHE4 81 aa12.55□□□□□ -0.4
CLN3-218ENST00000565688 FAT1Q14517 4588 aa12.55□□□□□ -0.4
CLN3-218ENST00000565688 LAGE3Q14657 143 aa12.54□□□□□ -0.4
CLN3-218ENST00000565688 ZFP2Q6ZN57 461 aa12.54□□□□□ -0.4
CLN3-218ENST00000565688 INO80EQ8NBZ0 244 aaPredicted RBP12.54□□□□□ -0.4
CLN3-218ENST00000565688 Q9HAA7 133 aa12.54□□□□□ -0.4
CLN3-218ENST00000565688 A8MWV9 139 aa12.53□□□□□ -0.4
CLN3-218ENST00000565688 IGHV3-30P01768 117 aa12.53□□□□□ -0.4
CLN3-218ENST00000565688 IGHV3-33P01772 117 aa12.53□□□□□ -0.4
CLN3-218ENST00000565688 IGHV3-30-3P0DP02 117 aa12.53□□□□□ -0.4
CLN3-218ENST00000565688 IGHV3-30-5P0DP03 117 aa12.53□□□□□ -0.4
CLN3-218ENST00000565688 S100A4P26447 101 aaKnown RBP12.53□□□□□ -0.4
CLN3-218ENST00000565688 TMEM70Q9BUB7 260 aa12.53□□□□□ -0.4
CLN3-218ENST00000565688 BORCS7-ASMTA0A0B4J1R7 106 aa12.52□□□□□ -0.41
CLN3-218ENST00000565688 FABP5P3A8MUU1 101 aa12.52□□□□□ -0.41
CLN3-218ENST00000565688 IFNA7P01567 189 aa12.52□□□□□ -0.41
CLN3-218ENST00000565688 GIPP09681 153 aaPredicted RBP12.52□□□□□ -0.41
CLN3-218ENST00000565688 Q8N814 137 aa12.52□□□□□ -0.41
CLN3-218ENST00000565688 TM2D2Q9BX73 214 aa12.52□□□□□ -0.41
CLN3-218ENST00000565688 NKX6-2Q9C056 277 aaPredicted RBP12.52□□□□□ -0.41
CLN3-218ENST00000565688 PARLQ9H300 379 aa12.52□□□□□ -0.41
CLN3-218ENST00000565688 BATF3Q9NR55 127 aa12.52□□□□□ -0.41
CLN3-218ENST00000565688 HERC1Q15751 4861 aa12.52□□□□□ -0.41
CLN3-218ENST00000565688 ASIPP42127 132 aa12.51□□□□□ -0.41
CLN3-218ENST00000565688 LINC00479Q96M42 142 aa12.51□□□□□ -0.41
CLN3-218ENST00000565688 ARL2-SNX15V9GYD0 113 aa12.51□□□□□ -0.41
CLN3-218ENST00000565688 TRAV34A0A0B4J273 112 aa12.5□□□□□ -0.41
CLN3-218ENST00000565688 IGKV3D-20A0A0C4DH25 116 aa12.5□□□□□ -0.41
CLN3-218ENST00000565688 CTXND1A0A1B0GTU2 59 aa12.5□□□□□ -0.41
CLN3-218ENST00000565688 FAM229AH3BQW9 127 aa12.5□□□□□ -0.41
CLN3-218ENST00000565688 LGALSLQ3ZCW2 172 aaPredicted RBP12.5□□□□□ -0.41
CLN3-218ENST00000565688 Q5BKY6 102 aa12.5□□□□□ -0.41
CLN3-218ENST00000565688 RPL7L1Q6DKI1 246 aaKnown RBP12.5□□□□□ -0.41
CLN3-218ENST00000565688 IL36BQ9NZH7 164 aa12.5□□□□□ -0.41
CLN3-218ENST00000565688 PEX7O00628 323 aa12.49□□□□□ -0.41
CLN3-218ENST00000565688 SMR3BP02814 79 aaPredicted RBP12.49□□□□□ -0.41
CLN3-218ENST00000565688 Q6ZSN1 163 aa12.49□□□□□ -0.41
CLN3-218ENST00000565688 HIST1H2BAQ96A08 127 aa12.49□□□□□ -0.41
CLN3-218ENST00000565688 A0A087WWC5 75 aa12.48□□□□□ -0.41
CLN3-218ENST00000565688 FXYD6-FXYD2A0A087WZ82 144 aa12.48□□□□□ -0.41
CLN3-218ENST00000565688 RNF222A6NCQ9 220 aa12.48□□□□□ -0.41
CLN3-218ENST00000565688 GAGE12JA6NER3 117 aa12.48□□□□□ -0.41
CLN3-218ENST00000565688 B4DEV8 164 aa12.48□□□□□ -0.41
CLN3-218ENST00000565688 LINC00694P0DN24 101 aa12.48□□□□□ -0.41
CLN3-218ENST00000565688 FGF8P55075 233 aaPredicted RBP12.48□□□□□ -0.41
CLN3-218ENST00000565688 GAGE1Q13065 139 aa12.48□□□□□ -0.41
CLN3-218ENST00000565688 GAGE4Q13068 117 aa12.48□□□□□ -0.41
CLN3-218ENST00000565688 GAGE5Q13069 117 aa12.48□□□□□ -0.41
CLN3-218ENST00000565688 ZNF726P1Q15940 193 aa12.48□□□□□ -0.41
CLN3-218ENST00000565688 GAGE13Q4V321 117 aa12.48□□□□□ -0.41
CLN3-218ENST00000565688 Q86TA4 180 aa12.48□□□□□ -0.41
CLN3-218ENST00000565688 VPS13BQ7Z7G8 4022 aa12.47□□□□□ -0.41
CLN3-218ENST00000565688 TRAV8-3A0A0A6YYJ7 113 aa12.47□□□□□ -0.41
CLN3-218ENST00000565688 UBE2G2P60604 165 aa12.47□□□□□ -0.41
CLN3-218ENST00000565688 TOR2AQ5JU69 321 aa12.47□□□□□ -0.41
CLN3-218ENST00000565688 SYT8Q8NBV8 401 aa12.47□□□□□ -0.41
CLN3-218ENST00000565688 FAM74A7A6NL05 159 aa12.46□□□□□ -0.41
CLN3-218ENST00000565688 RHODO00212 210 aa12.46□□□□□ -0.41
CLN3-218ENST00000565688 C1QBP02746 253 aa12.46□□□□□ -0.41
CLN3-218ENST00000565688 DNLZQ5SXM8 178 aa12.46□□□□□ -0.41
CLN3-218ENST00000565688 AKR1C8PQ5T2L2 129 aa12.46□□□□□ -0.41
CLN3-218ENST00000565688 UFSP1Q6NVU6 142 aa12.46□□□□□ -0.41
CLN3-218ENST00000565688 OR2T35Q8NGX2 323 aa12.46□□□□□ -0.41
CLN3-218ENST00000565688 ZFP30Q9Y2G7 519 aa12.46□□□□□ -0.41
CLN3-218ENST00000565688 H3BVH4 76 aa12.45□□□□□ -0.42
CLN3-218ENST00000565688 COX8CQ7Z4L0 72 aa12.45□□□□□ -0.42
CLN3-218ENST00000565688 KRBOX1C9JBD0 128 aa12.44□□□□□ -0.42
CLN3-218ENST00000565688 FAM162BQ5T6X4 162 aa12.44□□□□□ -0.42
CLN3-218ENST00000565688 DMRTA1Q5VZB9 504 aa12.44□□□□□ -0.42
CLN3-218ENST00000565688 OR11H4Q8NGC9 324 aa12.44□□□□□ -0.42
CLN3-218ENST00000565688 ZC2HC1AQ96GY0 325 aa12.44□□□□□ -0.42
CLN3-218ENST00000565688 FMC1Q96HJ9 113 aa12.44□□□□□ -0.42
CLN3-218ENST00000565688 TCEAL7Q9BRU2 100 aa12.44□□□□□ -0.42
CLN3-218ENST00000565688 SAMD10Q9BYL1 202 aa12.44□□□□□ -0.42
CLN3-218ENST00000565688 JPT2Q9H910 190 aa12.44□□□□□ -0.42
CLN3-218ENST00000565688 COX11Q9Y6N1 276 aa12.44□□□□□ -0.42
CLN3-218ENST00000565688 MYCBP2O75592 4640 aa12.43□□□□□ -0.42
CLN3-218ENST00000565688 M0R036 132 aa12.43□□□□□ -0.42
CLN3-218ENST00000565688 ARMS2P0C7Q2 107 aa12.43□□□□□ -0.42
CLN3-218ENST00000565688 CRIP1P50238 77 aa12.43□□□□□ -0.42
CLN3-218ENST00000565688 HAMPP81172 84 aa12.43□□□□□ -0.42
CLN3-218ENST00000565688 Q8N3U1 123 aa12.43□□□□□ -0.42
CLN3-218ENST00000565688 C14orf178Q8N769 122 aaPredicted RBP12.43□□□□□ -0.42
CLN3-218ENST00000565688 MAP1LC3B2A6NCE7 125 aa12.42□□□□□ -0.42
CLN3-218ENST00000565688 SH2D1AO60880 128 aa12.42□□□□□ -0.42
CLN3-218ENST00000565688 SEC11BP0C7V7 166 aa12.42□□□□□ -0.42
CLN3-218ENST00000565688 UBE2G1P62253 170 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms