RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 SAMD10Q9BYL1 202 aa4.69□□□□□ -1.66
VPS4A-203ENST00000564399 IGSF23A1L1A6 192 aa4.68□□□□□ -1.66
VPS4A-203ENST00000564399 TMEM262E9PQX1 116 aa4.68□□□□□ -1.66
VPS4A-203ENST00000564399 CRPP02741 224 aa4.68□□□□□ -1.66
VPS4A-203ENST00000564399 PRSS1P07477 247 aa4.68□□□□□ -1.66
VPS4A-203ENST00000564399 LINC00694P0DN24 101 aa4.68□□□□□ -1.66
VPS4A-203ENST00000564399 LGALSLQ3ZCW2 172 aaPredicted RBP4.68□□□□□ -1.66
VPS4A-203ENST00000564399 DGAT2L7PQ6IED9 249 aa4.68□□□□□ -1.66
VPS4A-203ENST00000564399 ATRAIDQ6UW56 229 aa4.68□□□□□ -1.66
VPS4A-203ENST00000564399 GOLT1AQ6ZVE7 132 aa4.68□□□□□ -1.66
VPS4A-203ENST00000564399 TMEM252Q8N6L7 170 aa4.68□□□□□ -1.66
VPS4A-203ENST00000564399 MITD1Q8WV92 249 aa4.68□□□□□ -1.66
VPS4A-203ENST00000564399 BCL7BQ9BQE9 202 aa4.68□□□□□ -1.66
VPS4A-203ENST00000564399 CHCHD7Q9BUK0 85 aa4.68□□□□□ -1.66
VPS4A-203ENST00000564399 SLIRPQ9GZT3 109 aaKnown RBP4.68□□□□□ -1.66
VPS4A-203ENST00000564399 PARLQ9H300 379 aa4.68□□□□□ -1.66
VPS4A-203ENST00000564399 LYRM2Q9NU23 88 aaPredicted RBP4.68□□□□□ -1.66
VPS4A-203ENST00000564399 Q9UF83 564 aa4.68□□□□□ -1.66
VPS4A-203ENST00000564399 MUC2Q02817 5179 aa4.67□□□□□ -1.66
VPS4A-203ENST00000564399 NAP1L6A6NFF2 107 aa4.67□□□□□ -1.66
VPS4A-203ENST00000564399 A8MWV9 139 aa4.67□□□□□ -1.66
VPS4A-203ENST00000564399 FAM74A1Q5RGS3 127 aa4.67□□□□□ -1.66
VPS4A-203ENST00000564399 ZFP2Q6ZN57 461 aa4.67□□□□□ -1.66
VPS4A-203ENST00000564399 SDIM1Q6ZPB5 146 aa4.67□□□□□ -1.66
VPS4A-203ENST00000564399 C14orf178Q8N769 122 aaPredicted RBP4.67□□□□□ -1.66
VPS4A-203ENST00000564399 C15orf54Q8N8G6 183 aa4.67□□□□□ -1.66
VPS4A-203ENST00000564399 OR2G3Q8NGZ4 309 aa4.67□□□□□ -1.66
VPS4A-203ENST00000564399 PTH2Q96A98 100 aa4.67□□□□□ -1.66
VPS4A-203ENST00000564399 TVP23CQ96ET8 276 aa4.67□□□□□ -1.66
VPS4A-203ENST00000564399 C9orf85Q96MD7 179 aa4.67□□□□□ -1.66
VPS4A-203ENST00000564399 LINC01600Q96MT4 127 aa4.67□□□□□ -1.66
VPS4A-203ENST00000564399 NDFIP1Q9BT67 221 aa4.67□□□□□ -1.66
VPS4A-203ENST00000564399 C11orf1Q9H5F2 150 aa4.67□□□□□ -1.66
VPS4A-203ENST00000564399 OTORQ9NRC9 128 aa4.67□□□□□ -1.66
VPS4A-203ENST00000564399 KCNIP2Q9NS61 270 aa4.67□□□□□ -1.66
VPS4A-203ENST00000564399 C11orf21Q9P2W6 132 aa4.67□□□□□ -1.66
VPS4A-203ENST00000564399 V9GYH0 126 aa4.67□□□□□ -1.66
VPS4A-203ENST00000564399 TNXBP22105 4242 aa4.67□□□□□ -1.66
VPS4A-203ENST00000564399 TAAR5O14804 337 aa4.66□□□□□ -1.66
VPS4A-203ENST00000564399 NOL3O60936 208 aaKnown RBP4.66□□□□□ -1.66
VPS4A-203ENST00000564399 S100A4P26447 101 aaKnown RBP4.66□□□□□ -1.66
VPS4A-203ENST00000564399 S100A5P33763 92 aa4.66□□□□□ -1.66
VPS4A-203ENST00000564399 TMBIM6P55061 237 aa4.66□□□□□ -1.66
VPS4A-203ENST00000564399 RPL19P84098 196 aaKnown RBP4.66□□□□□ -1.66
VPS4A-203ENST00000564399 ENHOQ6UWT2 76 aa4.66□□□□□ -1.66
VPS4A-203ENST00000564399 TMEM75Q8N9X5 138 aa4.66□□□□□ -1.66
VPS4A-203ENST00000564399 SGK494Q96LW2 274 aa4.66□□□□□ -1.66
VPS4A-203ENST00000564399 LINC00479Q96M42 142 aa4.66□□□□□ -1.66
VPS4A-203ENST00000564399 MRPS26Q9BYN8 205 aaKnown RBP4.66□□□□□ -1.66
VPS4A-203ENST00000564399 JPT2Q9H910 190 aa4.66□□□□□ -1.66
VPS4A-203ENST00000564399 A0A087WYN8 130 aa4.65□□□□□ -1.67
VPS4A-203ENST00000564399 CENPXA8MT69 81 aa4.65□□□□□ -1.67
VPS4A-203ENST00000564399 C17orf112F2Z3M2 114 aa4.65□□□□□ -1.67
VPS4A-203ENST00000564399 PHOX2AO14813 284 aa4.65□□□□□ -1.67
VPS4A-203ENST00000564399 GCGP01275 180 aa4.65□□□□□ -1.67
VPS4A-203ENST00000564399 ANGP03950 147 aaKnown RBP4.65□□□□□ -1.67
VPS4A-203ENST00000564399 RNASE3P12724 160 aaKnown RBP4.65□□□□□ -1.67
VPS4A-203ENST00000564399 ZNF80P51504 273 aaPredicted RBP4.65□□□□□ -1.67
VPS4A-203ENST00000564399 TAS2R45P59539 299 aa4.65□□□□□ -1.67
VPS4A-203ENST00000564399 GNG5P63218 68 aa4.65□□□□□ -1.67
VPS4A-203ENST00000564399 NHLH2Q02577 135 aa4.65□□□□□ -1.67
VPS4A-203ENST00000564399 RAB32Q13637 225 aa4.65□□□□□ -1.67
VPS4A-203ENST00000564399 KHDC3LQ587J8 217 aa4.65□□□□□ -1.67
VPS4A-203ENST00000564399 TRIQKQ629K1 86 aa4.65□□□□□ -1.67
VPS4A-203ENST00000564399 OR5C1Q8NGR4 320 aa4.65□□□□□ -1.67
VPS4A-203ENST00000564399 C7orf33Q8WU49 177 aa4.65□□□□□ -1.67
VPS4A-203ENST00000564399 MBD2Q9UBB5 411 aa4.65□□□□□ -1.67
VPS4A-203ENST00000564399 FAT4Q6V0I7 4981 aa4.64□□□□□ -1.67
VPS4A-203ENST00000564399 A0A0J9YXV3 536 aa4.64□□□□□ -1.67
VPS4A-203ENST00000564399 RHODO00212 210 aa4.64□□□□□ -1.67
VPS4A-203ENST00000564399 EIF3GO75821 320 aaKnown RBP eCLIP4.64□□□□□ -1.67
VPS4A-203ENST00000564399 CIRBPQ14011 172 aaKnown RBP4.64□□□□□ -1.67
VPS4A-203ENST00000564399 MIAQ16674 131 aa4.64□□□□□ -1.67
VPS4A-203ENST00000564399 ZFP69Q49AA0 526 aa4.64□□□□□ -1.67
VPS4A-203ENST00000564399 FAM74A4Q5TZK3 123 aa4.64□□□□□ -1.67
VPS4A-203ENST00000564399 WDR73Q6P4I2 378 aa4.64□□□□□ -1.67
VPS4A-203ENST00000564399 OR10G7Q8NGN6 311 aa4.64□□□□□ -1.67
VPS4A-203ENST00000564399 RNF185Q96GF1 192 aa4.64□□□□□ -1.67
VPS4A-203ENST00000564399 OR5AC2Q9NZP5 309 aa4.64□□□□□ -1.67
VPS4A-203ENST00000564399 KIF25-AS1Q9Y6Z4 181 aa4.64□□□□□ -1.67
VPS4A-203ENST00000564399 IGHV3-64A0A075B6Q5 118 aa4.63□□□□□ -1.67
VPS4A-203ENST00000564399 A0A087WWL8 130 aa4.63□□□□□ -1.67
VPS4A-203ENST00000564399 hDV102S1A0JD36 115 aa4.63□□□□□ -1.67
VPS4A-203ENST00000564399 H3BMQ9 156 aa4.63□□□□□ -1.67
VPS4A-203ENST00000564399 K7EQM0 130 aa4.63□□□□□ -1.67
VPS4A-203ENST00000564399 CHTF8P0CG12 524 aa4.63□□□□□ -1.67
VPS4A-203ENST00000564399 RPL36AP83881 106 aaKnown RBP4.63□□□□□ -1.67
VPS4A-203ENST00000564399 CNPY1Q3B7I2 92 aa4.63□□□□□ -1.67
VPS4A-203ENST00000564399 SMUG1Q53HV7 270 aa4.63□□□□□ -1.67
VPS4A-203ENST00000564399 MPV17L2Q567V2 206 aa4.63□□□□□ -1.67
VPS4A-203ENST00000564399 PIK3CD-AS1Q5SR53 167 aa4.63□□□□□ -1.67
VPS4A-203ENST00000564399 ARL6IP6Q8N6S5 226 aa4.63□□□□□ -1.67
VPS4A-203ENST00000564399 CLRN3Q8NCR9 226 aa4.63□□□□□ -1.67
VPS4A-203ENST00000564399 GTSF1Q8WW33 167 aa4.63□□□□□ -1.67
VPS4A-203ENST00000564399 RPL36ALQ969Q0 106 aaKnown RBP4.63□□□□□ -1.67
VPS4A-203ENST00000564399 WDR61Q9GZS3 305 aaKnown RBP4.63□□□□□ -1.67
VPS4A-203ENST00000564399 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.62□□□□□ -1.67
VPS4A-203ENST00000564399 BTCP35070 178 aa4.62□□□□□ -1.67
VPS4A-203ENST00000564399 KRTAP10-8P60410 259 aa4.62□□□□□ -1.67
VPS4A-203ENST00000564399 UFSP1Q6NVU6 142 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 225 ms