RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 NXT2Q9NPJ8 142 aaKnown RBP10.22□□□□□ -0.77
CLK3-215ENST00000564353 HHLA3Q9XRX5 114 aa10.22□□□□□ -0.77
CLK3-215ENST00000564353 TSPAN13O95857 204 aa10.22□□□□□ -0.77
CLK3-215ENST00000564353 RBAKDNA6NC62 111 aa10.21□□□□□ -0.77
CLK3-215ENST00000564353 IGKCP01834 107 aa10.21□□□□□ -0.77
CLK3-215ENST00000564353 ADAMTSL5Q6ZMM2 481 aa10.21□□□□□ -0.77
CLK3-215ENST00000564353 C9orf47Q6ZRZ4 202 aa10.21□□□□□ -0.77
CLK3-215ENST00000564353 IGLV2-18A0A075B6J9 118 aa10.21□□□□□ -0.78
CLK3-215ENST00000564353 FXYD2P54710 66 aa10.21□□□□□ -0.78
CLK3-215ENST00000564353 CD300EQ496F6 205 aaPredicted RBP10.21□□□□□ -0.78
CLK3-215ENST00000564353 TCTEX1D4Q5JR98 221 aa10.21□□□□□ -0.78
CLK3-215ENST00000564353 ZFAND2AQ8N6M9 145 aa10.21□□□□□ -0.78
CLK3-215ENST00000564353 Q8N8P6 123 aa10.21□□□□□ -0.78
CLK3-215ENST00000564353 OR10J6PQ8NGY7 276 aa10.21□□□□□ -0.78
CLK3-215ENST00000564353 DUX5Q96PT3 197 aa10.21□□□□□ -0.78
CLK3-215ENST00000564353 RHPN1-AS1Q9BWJ2 59 aa10.21□□□□□ -0.78
CLK3-215ENST00000564353 PHLDA3Q9Y5J5 127 aa10.21□□□□□ -0.78
CLK3-215ENST00000564353 U3KQE9 123 aa10.21□□□□□ -0.78
CLK3-215ENST00000564353 MXRA5Q9NR99 2828 aa10.21□□□□□ -0.78
CLK3-215ENST00000564353 EMP1P54849 157 aa10.2□□□□□ -0.78
CLK3-215ENST00000564353 MAPKAPK5-AS1Q8N8E1 139 aa10.2□□□□□ -0.78
CLK3-215ENST00000564353 PIMREGQ9BSJ6 248 aa10.2□□□□□ -0.78
CLK3-215ENST00000564353 USP24Q9UPU5 2620 aa10.2□□□□□ -0.78
CLK3-215ENST00000564353 LAGE3Q14657 143 aa10.2□□□□□ -0.78
CLK3-215ENST00000564353 ABCA12Q86UK0 2595 aa10.2□□□□□ -0.78
CLK3-215ENST00000564353 MYOZ3Q8TDC0 251 aa10.2□□□□□ -0.78
CLK3-215ENST00000564353 RNF183Q96D59 192 aa10.2□□□□□ -0.78
CLK3-215ENST00000564353 LRRK2Q5S007 2527 aa10.19□□□□□ -0.78
CLK3-215ENST00000564353 FAM110AQ9BQ89 295 aa10.19□□□□□ -0.78
CLK3-215ENST00000564353 TRAV12-2A0A075B6T6 113 aa10.19□□□□□ -0.78
CLK3-215ENST00000564353 A0A087WWL8 130 aa10.19□□□□□ -0.78
CLK3-215ENST00000564353 A0A0G2JLM5 398 aa10.19□□□□□ -0.78
CLK3-215ENST00000564353 ZNF462Q96JM2 2506 aa10.18□□□□□ -0.78
CLK3-215ENST00000564353 TLN2Q9Y4G6 2542 aa10.18□□□□□ -0.78
CLK3-215ENST00000564353 FAM223BA6NKX1 122 aa10.18□□□□□ -0.78
CLK3-215ENST00000564353 K7EP34 96 aa10.18□□□□□ -0.78
CLK3-215ENST00000564353 C9orf139Q6ZV77 190 aa10.18□□□□□ -0.78
CLK3-215ENST00000564353 FAM223AQ8IWN6 122 aa10.18□□□□□ -0.78
CLK3-215ENST00000564353 DPF1Q92782 380 aa10.18□□□□□ -0.78
CLK3-215ENST00000564353 B5MCH6 92 aa10.18□□□□□ -0.78
CLK3-215ENST00000564353 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.18□□□□□ -0.78
CLK3-215ENST00000564353 DPM2O94777 84 aa10.18□□□□□ -0.78
CLK3-215ENST00000564353 C19orf54Q5BKX5 351 aa10.18□□□□□ -0.78
CLK3-215ENST00000564353 A6NDN8 102 aa10.17□□□□□ -0.78
CLK3-215ENST00000564353 SRSF2Q01130 221 aaKnown RBP10.17□□□□□ -0.78
CLK3-215ENST00000564353 C10orf105Q8TEF2 133 aa10.17□□□□□ -0.78
CLK3-215ENST00000564353 TMEM190Q8WZ59 177 aa10.17□□□□□ -0.78
CLK3-215ENST00000564353 RASL10AQ92737 203 aa10.17□□□□□ -0.78
CLK3-215ENST00000564353 CHAC1Q9BUX1 264 aa10.17□□□□□ -0.78
CLK3-215ENST00000564353 NHP2Q9NX24 153 aaKnown RBP10.17□□□□□ -0.78
CLK3-215ENST00000564353 DOPEY1Q5JWR5 2465 aa10.17□□□□□ -0.78
CLK3-215ENST00000564353 TRBV25-1A0A075B6N4 114 aa10.17□□□□□ -0.78
CLK3-215ENST00000564353 TRAV12-3A0A0B4J271 114 aa10.17□□□□□ -0.78
CLK3-215ENST00000564353 IGHV4-59P01825 116 aa10.17□□□□□ -0.78
CLK3-215ENST00000564353 SEC11AP67812 179 aa10.17□□□□□ -0.78
CLK3-215ENST00000564353 FAM74A4Q5TZK3 123 aa10.17□□□□□ -0.78
CLK3-215ENST00000564353 AGRNO00468 2067 aa10.17□□□□□ -0.78
CLK3-215ENST00000564353 ZNF688P0C7X2 276 aa10.16□□□□□ -0.78
CLK3-215ENST00000564353 ASIPP42127 132 aa10.16□□□□□ -0.78
CLK3-215ENST00000564353 TNFRSF18Q9Y5U5 241 aa10.16□□□□□ -0.78
CLK3-215ENST00000564353 EPG5Q9HCE0 2579 aa10.16□□□□□ -0.78
CLK3-215ENST00000564353 C9orf118A6NHY6 69 aa10.16□□□□□ -0.78
CLK3-215ENST00000564353 NDUFA4O00483 81 aa10.16□□□□□ -0.78
CLK3-215ENST00000564353 PRB1P04280 392 aa10.16□□□□□ -0.78
CLK3-215ENST00000564353 OR9G4Q8NGQ1 327 aa10.16□□□□□ -0.78
CLK3-215ENST00000564353 SPCS1Q9Y6A9 102 aa10.16□□□□□ -0.78
CLK3-215ENST00000564353 TRAV21A0A0B4J279 112 aa10.15□□□□□ -0.78
CLK3-215ENST00000564353 SOCS3O14543 225 aa10.15□□□□□ -0.78
CLK3-215ENST00000564353 HTN1P15515 57 aa10.15□□□□□ -0.78
CLK3-215ENST00000564353 SRSF1Q07955 248 aaKnown RBP eCLIP10.15□□□□□ -0.78
CLK3-215ENST00000564353 MTURNQ8N3F0 131 aa10.15□□□□□ -0.78
CLK3-215ENST00000564353 SCGB3A1Q96QR1 104 aa10.15□□□□□ -0.78
CLK3-215ENST00000564353 SMIM2Q9BVW6 85 aa10.15□□□□□ -0.78
CLK3-215ENST00000564353 PTPN13Q12923 2485 aa10.15□□□□□ -0.78
CLK3-215ENST00000564353 OR11H12B2RN74 326 aa10.15□□□□□ -0.78
CLK3-215ENST00000564353 F5H697 171 aa10.15□□□□□ -0.78
CLK3-215ENST00000564353 MSMBP08118 114 aa10.15□□□□□ -0.78
CLK3-215ENST00000564353 RPL32P62910 135 aaKnown RBP10.15□□□□□ -0.78
CLK3-215ENST00000564353 OR11H1Q8NG94 326 aa10.15□□□□□ -0.78
CLK3-215ENST00000564353 OR11H2Q8NH07 326 aa10.15□□□□□ -0.78
CLK3-215ENST00000564353 IGHG2P01859 326 aa10.15□□□□□ -0.79
CLK3-215ENST00000564353 SUMO2P61956 95 aaKnown RBP10.15□□□□□ -0.79
CLK3-215ENST00000564353 A6NDX4 124 aa10.14□□□□□ -0.79
CLK3-215ENST00000564353 RNASE3P12724 160 aaKnown RBP10.14□□□□□ -0.79
CLK3-215ENST00000564353 LINC00477Q96M19 166 aa10.14□□□□□ -0.79
CLK3-215ENST00000564353 ANKRD17O75179 2603 aaKnown RBP10.14□□□□□ -0.79
CLK3-215ENST00000564353 H3BRM9 83 aa10.14□□□□□ -0.79
CLK3-215ENST00000564353 SFTA2Q6UW10 78 aa10.14□□□□□ -0.79
CLK3-215ENST00000564353 ZMAT4Q9H898 229 aa10.14□□□□□ -0.79
CLK3-215ENST00000564353 MRPL16Q9NX20 251 aaKnown RBP10.14□□□□□ -0.79
CLK3-215ENST00000564353 PSMG4Q5JS54 123 aa10.13□□□□□ -0.79
CLK3-215ENST00000564353 MRPL53Q96EL3 112 aaKnown RBP10.13□□□□□ -0.79
CLK3-215ENST00000564353 KLK9Q9UKQ9 250 aa10.13□□□□□ -0.79
CLK3-215ENST00000564353 ZNF469Q96JG9 3925 aaPredicted RBP10.13□□□□□ -0.79
CLK3-215ENST00000564353 ATP5LO75964 103 aa10.13□□□□□ -0.79
CLK3-215ENST00000564353 PRM2P04554 102 aa10.13□□□□□ -0.79
CLK3-215ENST00000564353 CD7P09564 240 aa10.13□□□□□ -0.79
CLK3-215ENST00000564353 MUC4Q99102 2169 aa10.13□□□□□ -0.79
CLK3-215ENST00000564353 SETD2Q9BYW2 2564 aaPredicted RBP10.13□□□□□ -0.79
CLK3-215ENST00000564353 DAZ1Q9NQZ3 744 aaKnown RBP10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms