RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 CD7P09564 240 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 METTL15P1P0C7V9 234 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 TAS2R20P59543 309 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 QRFPP83859 136 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 ZNF816Q0VGE8 651 aaPredicted RBP3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 ZNF846Q147U1 533 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 HMGN3Q15651 99 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 C9orf129Q5T035 196 aaKnown RBP3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 NTM-AS1Q6ZSK4 140 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 LCA10Q71F78 164 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 LYPD6Q86Y78 171 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 PRR15Q8IV56 129 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 H1FOOQ8IZA3 346 aaPredicted RBP3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 FER1L6-AS1Q8NA97 138 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 RBMXL1Q96E39 390 aaKnown RBP3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 IFI27L2Q9H2X8 130 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 OR5AC2Q9NZP5 309 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 LAMTOR3Q9UHA4 124 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 NAT8BQ9UHF3 227 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 DOCK11Q5JSL3 2073 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 FLNCQ14315 2725 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 PRRC2AP48634 2157 aaKnown RBP3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 AKAP6Q13023 2319 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 SMG1Q96Q15 3661 aaKnown RBP3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 A0A096LNT2 108 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 TRBV6-7A0A0A0MS04 114 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 TRAV5A0A0B4J249 113 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 IZUMO1RA6ND01 250 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 KRTAP29-1A8MX34 341 aaPredicted RBP3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 BPY2O14599 106 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 TAX1BP3O14907 124 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 AZU1P20160 251 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 CRYBB3P26998 211 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 RPL35P42766 123 aaKnown RBP3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 ZNF137PP52743 207 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 KRTAP21-3Q3LHN1 58 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 ZNF880Q6PDB4 577 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 SLC25A34Q6PIV7 304 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 C18orf65Q6ZTR6 163 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 SNX29P2Q8IUI4 249 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 RPP25LQ8N5L8 163 aaKnown RBP3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 POM121L12Q8N7R1 296 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 C3orf56Q8N813 242 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 MAPK1IP1LQ8NDC0 245 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 OR4X2Q8NGF9 303 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 TERB2Q8NHR7 220 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 LINC00479Q96M42 142 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 RPP21Q9H633 154 aaKnown RBP3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 PHLDA3Q9Y5J5 127 aa3.54□□□□□ -1.84
VPS35P1-201ENST00000563400 IGHV3-43A0A0B4J1X8 118 aa3.53□□□□□ -1.84
VPS35P1-201ENST00000563400 TMEM235A6NFC5 223 aa3.53□□□□□ -1.84
VPS35P1-201ENST00000563400 RBFOX2O43251 390 aaKnown RBP eCLIP3.53□□□□□ -1.84
VPS35P1-201ENST00000563400 DPM2O94777 84 aa3.53□□□□□ -1.84
VPS35P1-201ENST00000563400 IGLV1-47P01700 117 aa3.53□□□□□ -1.84
VPS35P1-201ENST00000563400 S100A8P05109 93 aa3.53□□□□□ -1.84
VPS35P1-201ENST00000563400 CCL3L1P16619 93 aa3.53□□□□□ -1.84
VPS35P1-201ENST00000563400 HIST1H2BOP23527 126 aa3.53□□□□□ -1.84
VPS35P1-201ENST00000563400 HIST1H2BBP33778 126 aa3.53□□□□□ -1.84
VPS35P1-201ENST00000563400 AKR1D1P51857 326 aa3.53□□□□□ -1.84
VPS35P1-201ENST00000563400 HIST1H2BDP58876 126 aa3.53□□□□□ -1.84
VPS35P1-201ENST00000563400 HIST1H2BCP62807 126 aa3.53□□□□□ -1.84
VPS35P1-201ENST00000563400 INSL4Q14641 139 aa3.53□□□□□ -1.84
VPS35P1-201ENST00000563400 HIST2H2BEQ16778 126 aa3.53□□□□□ -1.84
VPS35P1-201ENST00000563400 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.53□□□□□ -1.84
VPS35P1-201ENST00000563400 ZNF660Q6AZW8 331 aaPredicted RBP3.53□□□□□ -1.84
VPS35P1-201ENST00000563400 OR8A1Q8NGG7 326 aa3.53□□□□□ -1.84
VPS35P1-201ENST00000563400 SMIM4Q8WVI0 70 aa3.53□□□□□ -1.84
VPS35P1-201ENST00000563400 HIST1H2BHQ93079 126 aa3.53□□□□□ -1.84
VPS35P1-201ENST00000563400 HIST1H2BNQ99877 126 aa3.53□□□□□ -1.84
VPS35P1-201ENST00000563400 HIST1H2BMQ99879 126 aa3.53□□□□□ -1.84
VPS35P1-201ENST00000563400 C21orf62Q9NYP8 219 aa3.53□□□□□ -1.84
VPS35P1-201ENST00000563400 HILPDAQ9Y5L2 63 aa3.53□□□□□ -1.84
VPS35P1-201ENST00000563400 ADGRG4Q8IZF6 3080 aa3.53□□□□□ -1.85
VPS35P1-201ENST00000563400 PRR14LQ5THK1 2151 aa3.52□□□□□ -1.85
VPS35P1-201ENST00000563400 MALRD1Q5VYJ5 2156 aa3.52□□□□□ -1.85
VPS35P1-201ENST00000563400 IGHV1-3A0A0C4DH29 117 aa3.52□□□□□ -1.85
VPS35P1-201ENST00000563400 ODF3BA8MYP8 253 aa3.52□□□□□ -1.85
VPS35P1-201ENST00000563400 LY6LH3BQJ8 138 aa3.52□□□□□ -1.85
VPS35P1-201ENST00000563400 UBE2L6O14933 153 aa3.52□□□□□ -1.85
VPS35P1-201ENST00000563400 PPYP01298 95 aa3.52□□□□□ -1.85
VPS35P1-201ENST00000563400 LINC00694P0DN24 101 aa3.52□□□□□ -1.85
VPS35P1-201ENST00000563400 HIST1H1BP16401 226 aaKnown RBP3.52□□□□□ -1.85
VPS35P1-201ENST00000563400 RPL30P62888 115 aaKnown RBP3.52□□□□□ -1.85
VPS35P1-201ENST00000563400 ERHP84090 104 aaKnown RBP3.52□□□□□ -1.85
VPS35P1-201ENST00000563400 SYCNQ0VAF6 134 aa3.52□□□□□ -1.85
VPS35P1-201ENST00000563400 RRN3P1Q2M238 152 aa3.52□□□□□ -1.85
VPS35P1-201ENST00000563400 LGALS9BQ3B8N2 356 aa3.52□□□□□ -1.85
VPS35P1-201ENST00000563400 SPRNQ5BIV9 151 aa3.52□□□□□ -1.85
VPS35P1-201ENST00000563400 AADACL3Q5VUY0 350 aa3.52□□□□□ -1.85
VPS35P1-201ENST00000563400 LGALS9CQ6DKI2 356 aa3.52□□□□□ -1.85
VPS35P1-201ENST00000563400 ZNF695Q8IW36 515 aa3.52□□□□□ -1.85
VPS35P1-201ENST00000563400 TYMSOSQ8TAI1 123 aa3.52□□□□□ -1.85
VPS35P1-201ENST00000563400 C2orf50Q96LR7 162 aa3.52□□□□□ -1.85
VPS35P1-201ENST00000563400 AP1S3Q96PC3 154 aa3.52□□□□□ -1.85
VPS35P1-201ENST00000563400 VGLL1Q99990 258 aa3.52□□□□□ -1.85
VPS35P1-201ENST00000563400 NAA38Q9BRA0 125 aaKnown RBP3.52□□□□□ -1.85
VPS35P1-201ENST00000563400 CHCHD7Q9BUK0 85 aa3.52□□□□□ -1.85
VPS35P1-201ENST00000563400 MRPL16Q9NX20 251 aaKnown RBP3.52□□□□□ -1.85
VPS35P1-201ENST00000563400 ZNRD1Q9P1U0 126 aa3.52□□□□□ -1.85
VPS35P1-201ENST00000563400 NAT8Q9UHE5 227 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 115.3 ms