RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 HHLA3Q9XRX5 114 aa1.85□□□□□ -2.11
SPG11-223ENST00000560858 HILPDAQ9Y5L2 63 aa1.85□□□□□ -2.11
SPG11-223ENST00000560858 SPCS1Q9Y6A9 102 aa1.85□□□□□ -2.11
SPG11-223ENST00000560858 BSNQ9UPA5 3926 aa1.85□□□□□ -2.11
SPG11-223ENST00000560858 ANKHD1Q8IWZ3 2542 aaKnown RBP1.85□□□□□ -2.11
SPG11-223ENST00000560858 MUC4Q99102 2169 aa1.85□□□□□ -2.11
SPG11-223ENST00000560858 PTPRQQ9UMZ3 2332 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 A0A087WX48 190 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 TRAV8-2A0A0B4J237 113 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 TRBV7-9A0A0J9YWB2 115 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 CENPVL3A0A0U1RRI6 287 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 LOC389332A0A1B0GUA5 103 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 A0A1W2PRD5 423 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 A0A1W2PRF3 423 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 A0A1W2PRM7 423 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 FAM223BA6NKX1 122 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 E9PLD3 99 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 F8VRH5 84 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 LYNX1G3V0Z9 82 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 K7ENP7 123 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 SOCS3O14543 225 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 ATP6V0E1O15342 81 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 ZNF207O43670 478 aaKnown RBP1.84□□□□□ -2.11
SPG11-223ENST00000560858 BRI3O95415 125 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 TRGV3P03979 118 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 LYNX1P0DP58 116 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 SCGB1A1P11684 91 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 FABP2P12104 132 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 GATA1P15976 413 aaPredicted RBP1.84□□□□□ -2.11
SPG11-223ENST00000560858 TMEM11P17152 192 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 PLNP26678 52 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 LEPP41159 167 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 NBL1P41271 181 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 NMUP48645 174 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 FXYD7P58549 80 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 RPL32P62910 135 aaKnown RBP1.84□□□□□ -2.11
SPG11-223ENST00000560858 ADORA2A-AS1P86434 159 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 ERCC8Q13216 396 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 HES1Q14469 280 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 ZC2HC1BQ5TFG8 222 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 APRG1Q8IVJ8 170 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 FAM223AQ8IWN6 122 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 CEND1Q8N111 149 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 ZFAND2AQ8N6M9 145 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 POM121L12Q8N7R1 296 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 NEXN-AS1Q8NBZ9 246 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 ITLN2Q8WWU7 325 aaPredicted RBP1.84□□□□□ -2.11
SPG11-223ENST00000560858 TOMM6Q96B49 74 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 FAM19A4Q96LR4 140 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 FOXC2Q99958 501 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 PRO0461Q9UI25 63 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 SH3BGRL2Q9UJC5 107 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 TIMM8BQ9Y5J9 83 aaPredicted RBP1.84□□□□□ -2.11
SPG11-223ENST00000560858 S4R3C0 116 aa1.84□□□□□ -2.11
SPG11-223ENST00000560858 NACAE9PAV3 2078 aa1.84□□□□□ -2.12
SPG11-223ENST00000560858 SPTBN2O15020 2390 aa1.84□□□□□ -2.12
SPG11-223ENST00000560858 DSPP15924 2871 aaKnown RBP1.84□□□□□ -2.12
SPG11-223ENST00000560858 WDFY4Q6ZS81 3184 aa1.84□□□□□ -2.12
SPG11-223ENST00000560858 ABCA4P78363 2273 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 WNK2Q9Y3S1 2297 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 DMDP11532 3685 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 COL6A3P12111 3177 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 BDP1A6H8Y1 2624 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 TRBV7-1A0A0A6YYK4 115 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 IGHV1-69DA0A0B4J2H0 117 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 TEX48A0A1B0GUV7 120 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 TMEM8BA6NDV4 472 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 LINC01549A6NIU2 74 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 IGLL5B9A064 214 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 TMEM238C9JI98 176 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 H3BUA1 57 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 K7ERJ3 54 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 GOSR1O95249 250 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 IGHV3-23P01764 117 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 ORM1P02763 201 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 PRSS1P07477 247 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 SMIM13P0DJ93 91 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 PRB4P10163 310 aaPredicted RBP1.83□□□□□ -2.12
SPG11-223ENST00000560858 COX6B1P14854 86 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 UBE2D1P51668 147 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 UBE2E1P51965 193 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 LAGE3Q14657 143 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 ECSCRQ19T08 205 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 RRN3P1Q2M238 152 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 C15orf32Q32M92 178 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 ORMDL2Q53FV1 153 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 TMEM78Q5T7P6 136 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 PRR9Q5T870 116 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 GPHB5Q86YW7 130 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 RNF182Q8N6D2 247 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 C5orf56Q8N8D9 126 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 ATP6V0E2Q8NHE4 81 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 LINC01560Q8TB33 94 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 BAALCQ8WXS3 180 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 RASL10AQ92737 203 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 RAB37Q96AX2 223 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 EEF1AKMT3Q96AZ1 226 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 METTL26Q96S19 204 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 C20orf78Q9BR46 151 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 NAA38Q9BRA0 125 aaKnown RBP1.83□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms