RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 PTH2Q96A98 100 aa8.53□□□□□ -1.04
SNX1-209ENST00000559961 TM2D2Q9BX73 214 aa8.53□□□□□ -1.04
SNX1-209ENST00000559961 KRTAP4-5Q9BYR2 181 aa8.53□□□□□ -1.04
SNX1-209ENST00000559961 LOC100131303A0A0U1RQF7 123 aa8.52□□□□□ -1.05
SNX1-209ENST00000559961 CTXND1A0A1B0GTU2 59 aa8.52□□□□□ -1.05
SNX1-209ENST00000559961 GCSHP23434 173 aa8.52□□□□□ -1.05
SNX1-209ENST00000559961 FGF8P55075 233 aaPredicted RBP8.52□□□□□ -1.05
SNX1-209ENST00000559961 LINC01556Q5JQF7 62 aa8.52□□□□□ -1.05
SNX1-209ENST00000559961 LELP1Q5T871 98 aa8.52□□□□□ -1.05
SNX1-209ENST00000559961 HIST1H2BAQ96A08 127 aa8.52□□□□□ -1.05
SNX1-209ENST00000559961 GTSF1LQ9H1H1 148 aa8.52□□□□□ -1.05
SNX1-209ENST00000559961 IGLV5-52A0A0A0MRZ9 124 aa8.51□□□□□ -1.05
SNX1-209ENST00000559961 ZNF80P51504 273 aaPredicted RBP8.51□□□□□ -1.05
SNX1-209ENST00000559961 UBE2G2P60604 165 aa8.51□□□□□ -1.05
SNX1-209ENST00000559961 UBE2G1P62253 170 aa8.51□□□□□ -1.05
SNX1-209ENST00000559961 TOR2AQ5JU69 321 aa8.51□□□□□ -1.05
SNX1-209ENST00000559961 ZNF506Q5JVG8 444 aa8.51□□□□□ -1.05
SNX1-209ENST00000559961 KCNIP4Q6PIL6 250 aa8.51□□□□□ -1.05
SNX1-209ENST00000559961 ZFP2Q6ZN57 461 aa8.51□□□□□ -1.05
SNX1-209ENST00000559961 NTN5Q8WTR8 489 aaPredicted RBP8.51□□□□□ -1.05
SNX1-209ENST00000559961 Q9HAA7 133 aa8.51□□□□□ -1.05
SNX1-209ENST00000559961 A0A087WWC5 75 aa8.5□□□□□ -1.05
SNX1-209ENST00000559961 IBA57-AS1B1ANH7 110 aa8.5□□□□□ -1.05
SNX1-209ENST00000559961 B4DEV8 164 aa8.5□□□□□ -1.05
SNX1-209ENST00000559961 GGTLC3B5MD39 225 aa8.5□□□□□ -1.05
SNX1-209ENST00000559961 IGHV3-30P01768 117 aa8.5□□□□□ -1.05
SNX1-209ENST00000559961 IGHV3-33P01772 117 aa8.5□□□□□ -1.05
SNX1-209ENST00000559961 SEC11BP0C7V7 166 aa8.5□□□□□ -1.05
SNX1-209ENST00000559961 IGHV3-30-3P0DP02 117 aa8.5□□□□□ -1.05
SNX1-209ENST00000559961 IGHV3-30-5P0DP03 117 aa8.5□□□□□ -1.05
SNX1-209ENST00000559961 PIK3CD-AS1Q5SR53 167 aa8.5□□□□□ -1.05
SNX1-209ENST00000559961 RPL7L1Q6DKI1 246 aaKnown RBP8.5□□□□□ -1.05
SNX1-209ENST00000559961 OR2T35Q8NGX2 323 aa8.5□□□□□ -1.05
SNX1-209ENST00000559961 C9orf85Q96MD7 179 aa8.5□□□□□ -1.05
SNX1-209ENST00000559961 ZFP30Q9Y2G7 519 aa8.5□□□□□ -1.05
SNX1-209ENST00000559961 URGCP-MRPS24S4R325 110 aa8.5□□□□□ -1.05
SNX1-209ENST00000559961 ARL2-SNX15V9GYD0 113 aa8.5□□□□□ -1.05
SNX1-209ENST00000559961 TRAV34A0A0B4J273 112 aa8.49□□□□□ -1.05
SNX1-209ENST00000559961 PGPEP1LA6NFU8 196 aa8.49□□□□□ -1.05
SNX1-209ENST00000559961 RHODO00212 210 aa8.49□□□□□ -1.05
SNX1-209ENST00000559961 PEX7O00628 323 aa8.49□□□□□ -1.05
SNX1-209ENST00000559961 TRAV8-3A0A0A6YYJ7 113 aa8.48□□□□□ -1.05
SNX1-209ENST00000559961 GAGE12JA6NER3 117 aa8.48□□□□□ -1.05
SNX1-209ENST00000559961 FAM229AH3BQW9 127 aa8.48□□□□□ -1.05
SNX1-209ENST00000559961 IGLV2-11P01706 119 aa8.48□□□□□ -1.05
SNX1-209ENST00000559961 FUSP35637 526 aaKnown RBP eCLIP8.48□□□□□ -1.05
SNX1-209ENST00000559961 GAGE1Q13065 139 aa8.48□□□□□ -1.05
SNX1-209ENST00000559961 GAGE4Q13068 117 aa8.48□□□□□ -1.05
SNX1-209ENST00000559961 GAGE5Q13069 117 aa8.48□□□□□ -1.05
SNX1-209ENST00000559961 GAGE13Q4V321 117 aa8.48□□□□□ -1.05
SNX1-209ENST00000559961 FAM162BQ5T6X4 162 aa8.48□□□□□ -1.05
SNX1-209ENST00000559961 CST9LP1Q5W188 147 aa8.48□□□□□ -1.05
SNX1-209ENST00000559961 OR11H4Q8NGC9 324 aa8.48□□□□□ -1.05
SNX1-209ENST00000559961 RMI2Q96E14 147 aa8.48□□□□□ -1.05
SNX1-209ENST00000559961 FMC1Q96HJ9 113 aa8.48□□□□□ -1.05
SNX1-209ENST00000559961 TCEAL7Q9BRU2 100 aa8.48□□□□□ -1.05
SNX1-209ENST00000559961 C11orf21Q9P2W6 132 aa8.48□□□□□ -1.05
SNX1-209ENST00000559961 PHLDA3Q9Y5J5 127 aa8.48□□□□□ -1.05
SNX1-209ENST00000559961 COX11Q9Y6N1 276 aa8.48□□□□□ -1.05
SNX1-209ENST00000559961 INAFM2P0DMQ5 153 aa8.47□□□□□ -1.05
SNX1-209ENST00000559961 RNASE3P12724 160 aaKnown RBP8.47□□□□□ -1.05
SNX1-209ENST00000559961 TPT1P13693 172 aaKnown RBP8.47□□□□□ -1.05
SNX1-209ENST00000559961 LAGE3Q14657 143 aa8.47□□□□□ -1.05
SNX1-209ENST00000559961 DPPA3Q6W0C5 159 aa8.47□□□□□ -1.05
SNX1-209ENST00000559961 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.47□□□□□ -1.05
SNX1-209ENST00000559961 LINC00479Q96M42 142 aa8.47□□□□□ -1.05
SNX1-209ENST00000559961 PARLQ9H300 379 aa8.47□□□□□ -1.05
SNX1-209ENST00000559961 IL36BQ9NZH7 164 aa8.47□□□□□ -1.05
SNX1-209ENST00000559961 LRP1BQ9NZR2 4599 aa8.47□□□□□ -1.05
SNX1-209ENST00000559961 MAP1LC3B2A6NCE7 125 aa8.46□□□□□ -1.06
SNX1-209ENST00000559961 FAM74A7A6NL05 159 aa8.46□□□□□ -1.06
SNX1-209ENST00000559961 RGS21Q2M5E4 152 aa8.46□□□□□ -1.06
SNX1-209ENST00000559961 Q5BKY6 102 aa8.46□□□□□ -1.06
SNX1-209ENST00000559961 MAP1LC3BQ9GZQ8 125 aa8.46□□□□□ -1.06
SNX1-209ENST00000559961 IGKV3D-20A0A0C4DH25 116 aa8.45□□□□□ -1.06
SNX1-209ENST00000559961 RNF222A6NCQ9 220 aa8.45□□□□□ -1.06
SNX1-209ENST00000559961 H3BVH4 76 aa8.45□□□□□ -1.06
SNX1-209ENST00000559961 M0R036 132 aa8.45□□□□□ -1.06
SNX1-209ENST00000559961 ARPC5O15511 151 aa8.45□□□□□ -1.06
SNX1-209ENST00000559961 ARMS2P0C7Q2 107 aa8.45□□□□□ -1.06
SNX1-209ENST00000559961 KRTAP10-1P60331 282 aa8.45□□□□□ -1.06
SNX1-209ENST00000559961 ELOBQ15370 118 aa8.45□□□□□ -1.06
SNX1-209ENST00000559961 FAM74A4Q5TZK3 123 aa8.45□□□□□ -1.06
SNX1-209ENST00000559961 Q86TA4 180 aa8.45□□□□□ -1.06
SNX1-209ENST00000559961 HSPG2P98160 4391 aa8.45□□□□□ -1.06
SNX1-209ENST00000559961 KRBOX1C9JBD0 128 aa8.44□□□□□ -1.06
SNX1-209ENST00000559961 PFDN1O60925 122 aa8.44□□□□□ -1.06
SNX1-209ENST00000559961 S100A9P06702 114 aaKnown RBP8.44□□□□□ -1.06
SNX1-209ENST00000559961 AKR1C3P42330 323 aa8.44□□□□□ -1.06
SNX1-209ENST00000559961 FHITP49789 147 aa8.44□□□□□ -1.06
SNX1-209ENST00000559961 Q5VSD8 79 aa8.44□□□□□ -1.06
SNX1-209ENST00000559961 ZFP82Q8N141 532 aa8.44□□□□□ -1.06
SNX1-209ENST00000559961 Q8N814 137 aa8.44□□□□□ -1.06
SNX1-209ENST00000559961 TMEM70Q9BUB7 260 aa8.44□□□□□ -1.06
SNX1-209ENST00000559961 ABCA13Q86UQ4 5058 aa8.44□□□□□ -1.06
SNX1-209ENST00000559961 DNAH5Q8TE73 4624 aa8.44□□□□□ -1.06
SNX1-209ENST00000559961 A0A087WX48 190 aa8.43□□□□□ -1.06
SNX1-209ENST00000559961 GRIFINA4D1Z8 144 aa8.43□□□□□ -1.06
SNX1-209ENST00000559961 M0R381 172 aa8.43□□□□□ -1.06
SNX1-209ENST00000559961 SH2D1AO60880 128 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms