RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 EBLN2Q6P2I7 272 aa13.28□□□□□ -0.28
SNX1-208ENST00000559844 Q6ZQT7 251 aa13.28□□□□□ -0.28
SNX1-208ENST00000559844 OR10AG1Q8NH19 301 aa13.28□□□□□ -0.28
SNX1-208ENST00000559844 CCL24O00175 119 aa13.27□□□□□ -0.28
SNX1-208ENST00000559844 PMCHL1Q16048 86 aa13.27□□□□□ -0.28
SNX1-208ENST00000559844 H3BVH4 76 aa13.27□□□□□ -0.29
SNX1-208ENST00000559844 DUSP14O95147 198 aaKnown RBP13.27□□□□□ -0.29
SNX1-208ENST00000559844 ANXA2RQ3ZCQ2 193 aa13.27□□□□□ -0.29
SNX1-208ENST00000559844 TMEM70Q9BUB7 260 aa13.27□□□□□ -0.29
SNX1-208ENST00000559844 HSPB8Q9UJY1 196 aa13.27□□□□□ -0.29
SNX1-208ENST00000559844 A0A0J9YX75 114 aa13.26□□□□□ -0.29
SNX1-208ENST00000559844 S100A4P26447 101 aaKnown RBP13.26□□□□□ -0.29
SNX1-208ENST00000559844 C20orf144Q9BQM9 153 aa13.26□□□□□ -0.29
SNX1-208ENST00000559844 SIGLEC8Q9NYZ4 499 aa13.26□□□□□ -0.29
SNX1-208ENST00000559844 TRAV2A0A0B4J234 112 aa13.25□□□□□ -0.29
SNX1-208ENST00000559844 FHL3Q13643 280 aa13.25□□□□□ -0.29
SNX1-208ENST00000559844 OR9G4Q8NGQ1 327 aa13.25□□□□□ -0.29
SNX1-208ENST00000559844 NPYP01303 97 aa13.25□□□□□ -0.29
SNX1-208ENST00000559844 PF4P02776 101 aa13.25□□□□□ -0.29
SNX1-208ENST00000559844 IFI27P40305 119 aaPredicted RBP13.25□□□□□ -0.29
SNX1-208ENST00000559844 MAP1LC3AQ9H492 121 aa13.25□□□□□ -0.29
SNX1-208ENST00000559844 LOC389332A0A1B0GUA5 103 aa13.24□□□□□ -0.29
SNX1-208ENST00000559844 ADAMTSL5Q6ZMM2 481 aa13.24□□□□□ -0.29
SNX1-208ENST00000559844 SMKR1H3BMG3 65 aa13.23□□□□□ -0.29
SNX1-208ENST00000559844 FOXI2Q6ZQN5 318 aa13.23□□□□□ -0.29
SNX1-208ENST00000559844 NDUFAF3Q9BU61 184 aa13.23□□□□□ -0.29
SNX1-208ENST00000559844 C20orf202A1L168 122 aa13.23□□□□□ -0.29
SNX1-208ENST00000559844 C7orf71A4D174 169 aa13.23□□□□□ -0.29
SNX1-208ENST00000559844 CRXO43186 299 aaPredicted RBP13.23□□□□□ -0.29
SNX1-208ENST00000559844 NCR2O95944 276 aa13.23□□□□□ -0.29
SNX1-208ENST00000559844 EVI2AP22794 236 aa13.23□□□□□ -0.29
SNX1-208ENST00000559844 TSPOP30536 169 aa13.23□□□□□ -0.29
SNX1-208ENST00000559844 SPATA3Q8NHX4 192 aa13.23□□□□□ -0.29
SNX1-208ENST00000559844 MAP1LC3CQ9BXW4 147 aa13.23□□□□□ -0.29
SNX1-208ENST00000559844 SCRT2Q9NQ03 307 aa13.23□□□□□ -0.29
SNX1-208ENST00000559844 PAM16Q9Y3D7 125 aa13.23□□□□□ -0.29
SNX1-208ENST00000559844 VWFP04275 2813 aa13.23□□□□□ -0.29
SNX1-208ENST00000559844 SYS1-DBNDD2H3BUS1 97 aa13.22□□□□□ -0.29
SNX1-208ENST00000559844 CTAG1AP78358 180 aa13.22□□□□□ -0.29
SNX1-208ENST00000559844 KIR3DS1Q14943 382 aa13.22□□□□□ -0.29
SNX1-208ENST00000559844 TDRG1Q3Y452 100 aa13.22□□□□□ -0.29
SNX1-208ENST00000559844 FAM159AQ6UWV7 190 aa13.22□□□□□ -0.29
SNX1-208ENST00000559844 PHLDA3Q9Y5J5 127 aa13.22□□□□□ -0.29
SNX1-208ENST00000559844 TIMM8BQ9Y5J9 83 aaPredicted RBP13.22□□□□□ -0.29
SNX1-208ENST00000559844 TNFRSF6BO95407 300 aa13.21□□□□□ -0.29
SNX1-208ENST00000559844 PET117Q6UWS5 81 aa13.21□□□□□ -0.29
SNX1-208ENST00000559844 DLX4Q92988 240 aaPredicted RBP13.21□□□□□ -0.29
SNX1-208ENST00000559844 C14orf144Q96I85 54 aa13.21□□□□□ -0.29
SNX1-208ENST00000559844 NXT2Q9NPJ8 142 aaKnown RBP13.21□□□□□ -0.29
SNX1-208ENST00000559844 ANK2Q01484 3957 aa13.2□□□□□ -0.3
SNX1-208ENST00000559844 DYNLRB2Q8TF09 96 aa13.2□□□□□ -0.3
SNX1-208ENST00000559844 MRAP2Q96G30 205 aa13.2□□□□□ -0.3
SNX1-208ENST00000559844 GNRH2O43555 120 aa13.2□□□□□ -0.3
SNX1-208ENST00000559844 LINC01546A6NGU7 62 aa13.19□□□□□ -0.3
SNX1-208ENST00000559844 RNASE3P12724 160 aaKnown RBP13.19□□□□□ -0.3
SNX1-208ENST00000559844 CDKN1BP46527 198 aa13.19□□□□□ -0.3
SNX1-208ENST00000559844 SPATA45Q537H7 98 aa13.19□□□□□ -0.3
SNX1-208ENST00000559844 LINC00173Q6ZV60 143 aa13.19□□□□□ -0.3
SNX1-208ENST00000559844 LINC00482Q8N8I6 264 aa13.19□□□□□ -0.3
SNX1-208ENST00000559844 OR2K2Q8NGT1 345 aa13.19□□□□□ -0.3
SNX1-208ENST00000559844 TRRAPQ9Y4A5 3859 aa13.18□□□□□ -0.3
SNX1-208ENST00000559844 TRAV12-3A0A0B4J271 114 aa13.18□□□□□ -0.3
SNX1-208ENST00000559844 PRSS47A8MTI9 375 aa13.18□□□□□ -0.3
SNX1-208ENST00000559844 M0R381 172 aa13.18□□□□□ -0.3
SNX1-208ENST00000559844 HBDP02042 147 aa13.18□□□□□ -0.3
SNX1-208ENST00000559844 MIEN1Q9BRT3 115 aa13.18□□□□□ -0.3
SNX1-208ENST00000559844 DPH3P1Q9H4G8 78 aa13.18□□□□□ -0.3
SNX1-208ENST00000559844 TRAV9-2A0A087WT02 112 aa13.17□□□□□ -0.3
SNX1-208ENST00000559844 NXPH4O95158 308 aa13.17□□□□□ -0.3
SNX1-208ENST00000559844 DEFB125Q8N687 156 aa13.17□□□□□ -0.3
SNX1-208ENST00000559844 AP1S3Q96PC3 154 aa13.17□□□□□ -0.3
SNX1-208ENST00000559844 IGKV3-20P01619 116 aa13.16□□□□□ -0.3
SNX1-208ENST00000559844 ZNF705AQ6ZN79 300 aaPredicted RBP13.16□□□□□ -0.3
SNX1-208ENST00000559844 SPATA12Q7Z6I5 190 aa13.16□□□□□ -0.3
SNX1-208ENST00000559844 TMEM61Q8N0U2 210 aa13.16□□□□□ -0.3
SNX1-208ENST00000559844 Q8N8P6 123 aa13.16□□□□□ -0.3
SNX1-208ENST00000559844 A0A096LNJ9 63 aa13.16□□□□□ -0.3
SNX1-208ENST00000559844 DEFB114Q30KQ6 69 aa13.16□□□□□ -0.3
SNX1-208ENST00000559844 OR4C46A6NHA9 309 aa13.15□□□□□ -0.3
SNX1-208ENST00000559844 GAS8-AS1O95177 125 aa13.15□□□□□ -0.3
SNX1-208ENST00000559844 CD7P09564 240 aa13.15□□□□□ -0.3
SNX1-208ENST00000559844 DEFB131AP59861 70 aa13.15□□□□□ -0.3
SNX1-208ENST00000559844 AMTNQ6UX39 209 aa13.15□□□□□ -0.3
SNX1-208ENST00000559844 ATOH7Q8N100 152 aa13.15□□□□□ -0.3
SNX1-208ENST00000559844 NRACQ8N912 160 aa13.15□□□□□ -0.3
SNX1-208ENST00000559844 NOTCH3Q9UM47 2321 aa13.14□□□□□ -0.31
SNX1-208ENST00000559844 TRAV25A0A0B4J276 109 aa13.14□□□□□ -0.31
SNX1-208ENST00000559844 A8MTW9 85 aa13.14□□□□□ -0.31
SNX1-208ENST00000559844 HLA-DRB4P13762 266 aa13.14□□□□□ -0.31
SNX1-208ENST00000559844 SPINK13Q1W4C9 94 aa13.14□□□□□ -0.31
SNX1-208ENST00000559844 SPAG8Q99932 426 aaPredicted RBP13.14□□□□□ -0.31
SNX1-208ENST00000559844 HLA-DRB4X5D2U9 266 aa13.14□□□□□ -0.31
SNX1-208ENST00000559844 IGHV1OR15-1A0A075B7D0 117 aa13.14□□□□□ -0.31
SNX1-208ENST00000559844 GATA1P15976 413 aaPredicted RBP13.14□□□□□ -0.31
SNX1-208ENST00000559844 TRAV12-2A0A075B6T6 113 aa13.13□□□□□ -0.31
SNX1-208ENST00000559844 LINC01545Q5VT33 79 aa13.13□□□□□ -0.31
SNX1-208ENST00000559844 TRAV26-2A0A0B4J265 109 aa13.12□□□□□ -0.31
SNX1-208ENST00000559844 FCER1GP30273 86 aa13.12□□□□□ -0.31
SNX1-208ENST00000559844 C14orf178Q8N769 122 aaPredicted RBP13.12□□□□□ -0.31
SNX1-208ENST00000559844 IGLV2-18A0A075B6J9 118 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms