RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 OR5AL1P0C617 328 aa6.6□□□□□ -1.35
LDLR-210ENST00000559340 CACNG7P62955 275 aa6.6□□□□□ -1.35
LDLR-210ENST00000559340 WDR73Q6P4I2 378 aa6.6□□□□□ -1.35
LDLR-210ENST00000559340 ZFP82Q8N141 532 aa6.6□□□□□ -1.35
LDLR-210ENST00000559340 FER1L6-AS1Q8NA97 138 aa6.6□□□□□ -1.35
LDLR-210ENST00000559340 RASL10AQ92737 203 aa6.6□□□□□ -1.35
LDLR-210ENST00000559340 BORCS7Q96B45 105 aa6.6□□□□□ -1.35
LDLR-210ENST00000559340 ANAPC16Q96DE5 110 aa6.6□□□□□ -1.35
LDLR-210ENST00000559340 C9orf85Q96MD7 179 aa6.6□□□□□ -1.35
LDLR-210ENST00000559340 GFRA4Q9GZZ7 299 aa6.6□□□□□ -1.35
LDLR-210ENST00000559340 HUWE1Q7Z6Z7 4374 aaKnown RBP6.6□□□□□ -1.35
LDLR-210ENST00000559340 GAGE12BA1L429 117 aa6.59□□□□□ -1.35
LDLR-210ENST00000559340 H3BVH4 76 aa6.59□□□□□ -1.35
LDLR-210ENST00000559340 GAGE7O76087 117 aa6.59□□□□□ -1.35
LDLR-210ENST00000559340 ATP5G1P05496 136 aa6.59□□□□□ -1.35
LDLR-210ENST00000559340 GAGE12FP0CL80 117 aa6.59□□□□□ -1.35
LDLR-210ENST00000559340 GAGE12GP0CL81 117 aa6.59□□□□□ -1.35
LDLR-210ENST00000559340 GAGE12IP0CL82 117 aa6.59□□□□□ -1.35
LDLR-210ENST00000559340 DEFB130BP0DP73 79 aa6.59□□□□□ -1.35
LDLR-210ENST00000559340 DEFB130AP0DP74 79 aa6.59□□□□□ -1.35
LDLR-210ENST00000559340 RNASE3P12724 160 aaKnown RBP6.59□□□□□ -1.35
LDLR-210ENST00000559340 RPL19P84098 196 aaKnown RBP6.59□□□□□ -1.35
LDLR-210ENST00000559340 ZNF876PQ49A33 203 aa6.59□□□□□ -1.35
LDLR-210ENST00000559340 SPANXN1Q5VSR9 72 aa6.59□□□□□ -1.35
LDLR-210ENST00000559340 LINC00612Q8N6U2 182 aa6.59□□□□□ -1.35
LDLR-210ENST00000559340 C18orf15Q96N68 181 aa6.59□□□□□ -1.35
LDLR-210ENST00000559340 SSBP4Q9BWG4 385 aaPredicted RBP6.59□□□□□ -1.35
LDLR-210ENST00000559340 COL7A1Q02388 2944 aa6.59□□□□□ -1.36
LDLR-210ENST00000559340 STAB2Q8WWQ8 2551 aa6.58□□□□□ -1.36
LDLR-210ENST00000559340 TRAV10A0A0B4J240 114 aa6.58□□□□□ -1.36
LDLR-210ENST00000559340 A8MWV9 139 aa6.58□□□□□ -1.36
LDLR-210ENST00000559340 SNAI2O43623 268 aa6.58□□□□□ -1.36
LDLR-210ENST00000559340 NANOS2P60321 138 aaKnown RBP6.58□□□□□ -1.36
LDLR-210ENST00000559340 SLAQ13239 276 aa6.58□□□□□ -1.36
LDLR-210ENST00000559340 C12orf74Q32Q52 190 aa6.58□□□□□ -1.36
LDLR-210ENST00000559340 C10orf91Q5T1B1 145 aa6.58□□□□□ -1.36
LDLR-210ENST00000559340 Q6ZTI0 123 aa6.58□□□□□ -1.36
LDLR-210ENST00000559340 TSKUQ8WUA8 353 aa6.58□□□□□ -1.36
LDLR-210ENST00000559340 CTDSP1Q9GZU7 261 aa6.58□□□□□ -1.36
LDLR-210ENST00000559340 SCRT2Q9NQ03 307 aa6.58□□□□□ -1.36
LDLR-210ENST00000559340 MRPL16Q9NX20 251 aaKnown RBP6.58□□□□□ -1.36
LDLR-210ENST00000559340 CELA1Q9UNI1 258 aa6.58□□□□□ -1.36
LDLR-210ENST00000559340 CARHSP1Q9Y2V2 147 aaKnown RBP6.58□□□□□ -1.36
LDLR-210ENST00000559340 TRAV4A0A0B4J268 109 aa6.57□□□□□ -1.36
LDLR-210ENST00000559340 SNAPINO95295 136 aa6.57□□□□□ -1.36
LDLR-210ENST00000559340 IGLC6P0CF74 106 aa6.57□□□□□ -1.36
LDLR-210ENST00000559340 FOXA3P55318 350 aaPredicted RBP6.57□□□□□ -1.36
LDLR-210ENST00000559340 SMIM15Q7Z3B0 74 aa6.57□□□□□ -1.36
LDLR-210ENST00000559340 OR4C5Q8NGB2 326 aa6.57□□□□□ -1.36
LDLR-210ENST00000559340 TPPP3Q9BW30 176 aa6.57□□□□□ -1.36
LDLR-210ENST00000559340 KLK5Q9Y337 293 aaPredicted RBP6.57□□□□□ -1.36
LDLR-210ENST00000559340 V9GYV3 84 aa6.57□□□□□ -1.36
LDLR-210ENST00000559340 KMT2CQ8NEZ4 4911 aaKnown RBP6.57□□□□□ -1.36
LDLR-210ENST00000559340 DEFB131BA0A096LNP1 70 aa6.56□□□□□ -1.36
LDLR-210ENST00000559340 NUPR2A6NF83 97 aa6.56□□□□□ -1.36
LDLR-210ENST00000559340 C3orf84H3BNL1 204 aa6.56□□□□□ -1.36
LDLR-210ENST00000559340 M0R381 172 aa6.56□□□□□ -1.36
LDLR-210ENST00000559340 RHODO00212 210 aa6.56□□□□□ -1.36
LDLR-210ENST00000559340 RS1O15537 224 aa6.56□□□□□ -1.36
LDLR-210ENST00000559340 TRGC1P0CF51 173 aa6.56□□□□□ -1.36
LDLR-210ENST00000559340 SMIM17P0DL12 118 aa6.56□□□□□ -1.36
LDLR-210ENST00000559340 GZMBP10144 247 aa6.56□□□□□ -1.36
LDLR-210ENST00000559340 ADCYAP1P18509 176 aa6.56□□□□□ -1.36
LDLR-210ENST00000559340 RIGQ13278 110 aa6.56□□□□□ -1.36
LDLR-210ENST00000559340 RNF212Q495C1 297 aa6.56□□□□□ -1.36
LDLR-210ENST00000559340 LYZL1Q6UWQ5 148 aa6.56□□□□□ -1.36
LDLR-210ENST00000559340 SLC7A5P1Q8MH63 180 aa6.56□□□□□ -1.36
LDLR-210ENST00000559340 SVBPQ8N300 66 aa6.56□□□□□ -1.36
LDLR-210ENST00000559340 MUC7Q8TAX7 377 aa6.56□□□□□ -1.36
LDLR-210ENST00000559340 PHLDA1Q8WV24 401 aaPredicted RBP6.56□□□□□ -1.36
LDLR-210ENST00000559340 FAM210BQ96KR6 192 aa6.56□□□□□ -1.36
LDLR-210ENST00000559340 NAT8BQ9UHF3 227 aa6.56□□□□□ -1.36
LDLR-210ENST00000559340 IGHV4-4A0A075B6R2 117 aa6.55□□□□□ -1.36
LDLR-210ENST00000559340 TRGV4A0A0C4DH28 118 aa6.55□□□□□ -1.36
LDLR-210ENST00000559340 A0A1B0GUT8 65 aa6.55□□□□□ -1.36
LDLR-210ENST00000559340 SMIM27A0A1W2PRY6 76 aa6.55□□□□□ -1.36
LDLR-210ENST00000559340 HIGD1CA8MV81 97 aa6.55□□□□□ -1.36
LDLR-210ENST00000559340 F5H768 121 aa6.55□□□□□ -1.36
LDLR-210ENST00000559340 APOC3P02656 99 aa6.55□□□□□ -1.36
LDLR-210ENST00000559340 S100A8P05109 93 aa6.55□□□□□ -1.36
LDLR-210ENST00000559340 HTN3P15516 51 aa6.55□□□□□ -1.36
LDLR-210ENST00000559340 CTRLP40313 264 aa6.55□□□□□ -1.36
LDLR-210ENST00000559340 RHEBQ15382 184 aa6.55□□□□□ -1.36
LDLR-210ENST00000559340 DMRTA1Q5VZB9 504 aa6.55□□□□□ -1.36
LDLR-210ENST00000559340 ZFP2Q6ZN57 461 aa6.55□□□□□ -1.36
LDLR-210ENST00000559340 Q6ZTC4 211 aa6.55□□□□□ -1.36
LDLR-210ENST00000559340 ZNF575Q86XF7 245 aa6.55□□□□□ -1.36
LDLR-210ENST00000559340 CLRN3Q8NCR9 226 aa6.55□□□□□ -1.36
LDLR-210ENST00000559340 OR10AG1Q8NH19 301 aa6.55□□□□□ -1.36
LDLR-210ENST00000559340 PGLYRP4Q96LB8 373 aa6.55□□□□□ -1.36
LDLR-210ENST00000559340 AP1S3Q96PC3 154 aa6.55□□□□□ -1.36
LDLR-210ENST00000559340 IMMP2LQ96T52 175 aa6.55□□□□□ -1.36
LDLR-210ENST00000559340 TMEM242Q9NWH2 141 aa6.55□□□□□ -1.36
LDLR-210ENST00000559340 A0A087WWC5 75 aa6.54□□□□□ -1.36
LDLR-210ENST00000559340 A0A1B0GW15 77 aa6.54□□□□□ -1.36
LDLR-210ENST00000559340 NXPH4O95158 308 aa6.54□□□□□ -1.36
LDLR-210ENST00000559340 NTF3P20783 257 aa6.54□□□□□ -1.36
LDLR-210ENST00000559340 S100PP25815 95 aa6.54□□□□□ -1.36
LDLR-210ENST00000559340 TCTAP57738 103 aa6.54□□□□□ -1.36
LDLR-210ENST00000559340 TWIST1Q15672 202 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms