RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 SPANXDQ9BXN6 97 aa8.38□□□□□ -1.07
USP3-206ENST00000558157 H3BVH4 76 aa8.38□□□□□ -1.07
USP3-206ENST00000558157 CRYGBP07316 175 aa8.38□□□□□ -1.07
USP3-206ENST00000558157 RPL13AP40429 203 aaKnown RBP8.38□□□□□ -1.07
USP3-206ENST00000558157 ZNF491Q8N8L2 437 aa8.38□□□□□ -1.07
USP3-206ENST00000558157 NRACQ8N912 160 aa8.38□□□□□ -1.07
USP3-206ENST00000558157 RNF125Q96EQ8 232 aa8.38□□□□□ -1.07
USP3-206ENST00000558157 TPSG1Q9NRR2 321 aa8.38□□□□□ -1.07
USP3-206ENST00000558157 GAS8-AS1O95177 125 aa8.37□□□□□ -1.07
USP3-206ENST00000558157 TMEM155Q4W5P6 130 aa8.37□□□□□ -1.07
USP3-206ENST00000558157 ZNF575Q86XF7 245 aa8.37□□□□□ -1.07
USP3-206ENST00000558157 NEXN-AS1Q8NBZ9 246 aa8.37□□□□□ -1.07
USP3-206ENST00000558157 MSRB1Q9NZV6 116 aa8.37□□□□□ -1.07
USP3-206ENST00000558157 NAV3Q8IVL0 2385 aa8.37□□□□□ -1.07
USP3-206ENST00000558157 FBN2P35556 2912 aa8.37□□□□□ -1.07
USP3-206ENST00000558157 IGHV3-21A0A0B4J1V1 117 aa8.37□□□□□ -1.07
USP3-206ENST00000558157 FAM159AQ6UWV7 190 aa8.37□□□□□ -1.07
USP3-206ENST00000558157 TOMM6Q96B49 74 aa8.37□□□□□ -1.07
USP3-206ENST00000558157 TEX22C9J3V5 150 aa8.36□□□□□ -1.07
USP3-206ENST00000558157 ORM1P02763 201 aa8.36□□□□□ -1.07
USP3-206ENST00000558157 MEIG1Q5JSS6 88 aa8.36□□□□□ -1.07
USP3-206ENST00000558157 PAPPA-AS1Q5QFB9 102 aa8.36□□□□□ -1.07
USP3-206ENST00000558157 PRO1854Q9UHT4 67 aa8.36□□□□□ -1.07
USP3-206ENST00000558157 TACC2O95359 2948 aa8.36□□□□□ -1.07
USP3-206ENST00000558157 LINC01548A6NM66 108 aa8.35□□□□□ -1.07
USP3-206ENST00000558157 P0DMU3 169 aa8.35□□□□□ -1.07
USP3-206ENST00000558157 FAM231AP0DMU4 169 aa8.35□□□□□ -1.07
USP3-206ENST00000558157 FAM231CP0DMU5 169 aa8.35□□□□□ -1.07
USP3-206ENST00000558157 CCL3L1P16619 93 aa8.35□□□□□ -1.07
USP3-206ENST00000558157 RASL10AQ92737 203 aa8.35□□□□□ -1.07
USP3-206ENST00000558157 VPREB3Q9UKI3 123 aa8.35□□□□□ -1.07
USP3-206ENST00000558157 SIGLEC9Q9Y336 463 aa8.35□□□□□ -1.07
USP3-206ENST00000558157 HELZ2Q9BYK8 2649 aaKnown RBP8.35□□□□□ -1.07
USP3-206ENST00000558157 GATA1P15976 413 aaPredicted RBP8.35□□□□□ -1.07
USP3-206ENST00000558157 PRTN3P24158 256 aa8.35□□□□□ -1.07
USP3-206ENST00000558157 ZNF80P51504 273 aaPredicted RBP8.35□□□□□ -1.07
USP3-206ENST00000558157 TMEM200BQ69YZ2 307 aa8.35□□□□□ -1.07
USP3-206ENST00000558157 SCGB3A1Q96QR1 104 aa8.35□□□□□ -1.07
USP3-206ENST00000558157 DOPEY2Q9Y3R5 2298 aa8.34□□□□□ -1.07
USP3-206ENST00000558157 CFC1BP0CG36 223 aa8.34□□□□□ -1.07
USP3-206ENST00000558157 CFC1P0CG37 223 aa8.34□□□□□ -1.07
USP3-206ENST00000558157 RPL7P18124 248 aaKnown RBP8.34□□□□□ -1.07
USP3-206ENST00000558157 KRTAP10-9P60411 292 aa8.34□□□□□ -1.07
USP3-206ENST00000558157 HERVK_113P61574 105 aa8.34□□□□□ -1.07
USP3-206ENST00000558157 HIST2H2BCQ6DN03 193 aa8.34□□□□□ -1.07
USP3-206ENST00000558157 SMIM2Q9BVW6 85 aa8.34□□□□□ -1.07
USP3-206ENST00000558157 BPESC1Q9GZL8 116 aa8.34□□□□□ -1.07
USP3-206ENST00000558157 IGHV4-4A0A075B6R2 117 aa8.34□□□□□ -1.07
USP3-206ENST00000558157 IGKV2-40A0A087WW87 121 aaPredicted RBP8.34□□□□□ -1.07
USP3-206ENST00000558157 TRAV8-4A0A0B4J246 113 aa8.34□□□□□ -1.07
USP3-206ENST00000558157 A0A0J9YY99 117 aa8.34□□□□□ -1.07
USP3-206ENST00000558157 J3KRW8 73 aa8.34□□□□□ -1.07
USP3-206ENST00000558157 CRLF1O75462 422 aa8.34□□□□□ -1.07
USP3-206ENST00000558157 IGKV2D-40P01614 121 aaPredicted RBP8.34□□□□□ -1.07
USP3-206ENST00000558157 ATP5J2P56134 94 aa8.34□□□□□ -1.07
USP3-206ENST00000558157 ONECUT1Q9UBC0 465 aa8.34□□□□□ -1.07
USP3-206ENST00000558157 C9JAW5 83 aa8.33□□□□□ -1.08
USP3-206ENST00000558157 IGHV3-30P01768 117 aa8.33□□□□□ -1.08
USP3-206ENST00000558157 IGHV3-30-5P0DP03 117 aa8.33□□□□□ -1.08
USP3-206ENST00000558157 ERCC8Q13216 396 aa8.33□□□□□ -1.08
USP3-206ENST00000558157 ANXA2RQ3ZCQ2 193 aa8.33□□□□□ -1.08
USP3-206ENST00000558157 SFTA2Q6UW10 78 aa8.33□□□□□ -1.08
USP3-206ENST00000558157 Q8N1Y9 231 aa8.33□□□□□ -1.08
USP3-206ENST00000558157 SPANXCQ9NY87 97 aa8.33□□□□□ -1.08
USP3-206ENST00000558157 FAM240AA0A1B0GVK7 77 aa8.33□□□□□ -1.08
USP3-206ENST00000558157 DLX6P56179 175 aa8.33□□□□□ -1.08
USP3-206ENST00000558157 SLC25A29Q8N8R3 303 aa8.33□□□□□ -1.08
USP3-206ENST00000558157 PLEKHB2Q96CS7 222 aa8.33□□□□□ -1.08
USP3-206ENST00000558157 ODF3Q96PU9 254 aa8.33□□□□□ -1.08
USP3-206ENST00000558157 SLC50A1Q9BRV3 221 aa8.33□□□□□ -1.08
USP3-206ENST00000558157 CELSR2Q9HCU4 2923 aa8.33□□□□□ -1.08
USP3-206ENST00000558157 K7EIM0 57 aa8.32□□□□□ -1.08
USP3-206ENST00000558157 ENSAO43768 121 aaKnown RBP8.32□□□□□ -1.08
USP3-206ENST00000558157 C15orf53Q8NAA6 179 aa8.32□□□□□ -1.08
USP3-206ENST00000558157 MALRD1Q5VYJ5 2156 aa8.32□□□□□ -1.08
USP3-206ENST00000558157 RBAKDNA6NC62 111 aa8.32□□□□□ -1.08
USP3-206ENST00000558157 ATXN8Q156A1 80 aa8.32□□□□□ -1.08
USP3-206ENST00000558157 BAALCQ8WXS3 180 aa8.32□□□□□ -1.08
USP3-206ENST00000558157 PIMREGQ9BSJ6 248 aa8.32□□□□□ -1.08
USP3-206ENST00000558157 GCN1Q92616 2671 aaKnown RBP8.32□□□□□ -1.08
USP3-206ENST00000558157 CENPEQ02224 2701 aa8.32□□□□□ -1.08
USP3-206ENST00000558157 C10orf105Q8TEF2 133 aa8.31□□□□□ -1.08
USP3-206ENST00000558157 SPG11Q96JI7 2443 aa8.31□□□□□ -1.08
USP3-206ENST00000558157 RNF5Q99942 180 aa8.31□□□□□ -1.08
USP3-206ENST00000558157 TRAV2A0A0B4J234 112 aa8.31□□□□□ -1.08
USP3-206ENST00000558157 A0A0B4J2C4 111 aa8.31□□□□□ -1.08
USP3-206ENST00000558157 NTN5Q8WTR8 489 aaPredicted RBP8.31□□□□□ -1.08
USP3-206ENST00000558157 DNAJC30Q96LL9 226 aa8.31□□□□□ -1.08
USP3-206ENST00000558157 SPXQ9BT56 116 aa8.31□□□□□ -1.08
USP3-206ENST00000558157 NBPF19A0A087WUL8 3843 aa8.3□□□□□ -1.08
USP3-206ENST00000558157 TRBV7-7A0A0K0K1E9 115 aa8.3□□□□□ -1.08
USP3-206ENST00000558157 HES1Q14469 280 aa8.3□□□□□ -1.08
USP3-206ENST00000558157 C5orf47Q569G3 176 aa8.3□□□□□ -1.08
USP3-206ENST00000558157 LY6G5BQ8NDX9 201 aa8.3□□□□□ -1.08
USP3-206ENST00000558157 Q8TAT8 98 aa8.3□□□□□ -1.08
USP3-206ENST00000558157 IGHV4-30-2A0A087WSY4 118 aa8.3□□□□□ -1.08
USP3-206ENST00000558157 TRBV10-2A0A0K0K1G8 114 aa8.3□□□□□ -1.08
USP3-206ENST00000558157 LGALS9O00182 355 aa8.3□□□□□ -1.08
USP3-206ENST00000558157 DUSP14O95147 198 aaKnown RBP8.3□□□□□ -1.08
USP3-206ENST00000558157 APELAP0DMC3 54 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms