RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 JMJD8Q96S16 334 aa9.59□□□□□ -0.87
SHMT2-229ENST00000557348 LINC01619G3V211 115 aa9.58□□□□□ -0.88
SHMT2-229ENST00000557348 SAP30O75446 220 aa9.58□□□□□ -0.88
SHMT2-229ENST00000557348 CRIP1P50238 77 aa9.58□□□□□ -0.88
SHMT2-229ENST00000557348 SAMD5Q5TGI4 173 aa9.58□□□□□ -0.88
SHMT2-229ENST00000557348 AGPAT4-IT1Q9H0P7 198 aa9.58□□□□□ -0.88
SHMT2-229ENST00000557348 TMEM213A2RRL7 107 aa9.58□□□□□ -0.88
SHMT2-229ENST00000557348 RNASE1P07998 156 aaKnown RBP9.58□□□□□ -0.88
SHMT2-229ENST00000557348 HOXD3P31249 432 aaPredicted RBP9.58□□□□□ -0.88
SHMT2-229ENST00000557348 TCTEX1D4Q5JR98 221 aa9.58□□□□□ -0.88
SHMT2-229ENST00000557348 C10orf99Q6UWK7 81 aa9.58□□□□□ -0.88
SHMT2-229ENST00000557348 Q8TAT8 98 aa9.58□□□□□ -0.88
SHMT2-229ENST00000557348 SPATA25Q9BR10 227 aa9.58□□□□□ -0.88
SHMT2-229ENST00000557348 TM2D2Q9BX73 214 aa9.58□□□□□ -0.88
SHMT2-229ENST00000557348 VCX2Q9H322 139 aa9.58□□□□□ -0.88
SHMT2-229ENST00000557348 PEMTQ9UBM1 199 aa9.58□□□□□ -0.88
SHMT2-229ENST00000557348 PDZD2O15018 2839 aa9.57□□□□□ -0.88
SHMT2-229ENST00000557348 PRAC2D3DTV9 90 aa9.57□□□□□ -0.88
SHMT2-229ENST00000557348 Q6ZSV7 163 aa9.57□□□□□ -0.88
SHMT2-229ENST00000557348 IFI27L1Q96BM0 104 aa9.57□□□□□ -0.88
SHMT2-229ENST00000557348 IGHV4OR15-8A0A075B7B6 117 aa9.56□□□□□ -0.88
SHMT2-229ENST00000557348 A0A087WW49 117 aa9.56□□□□□ -0.88
SHMT2-229ENST00000557348 SNRPD3P62318 126 aaKnown RBP9.56□□□□□ -0.88
SHMT2-229ENST00000557348 FAM104BQ5XKR9 115 aa9.56□□□□□ -0.88
SHMT2-229ENST00000557348 C16orf95Q9H693 158 aa9.56□□□□□ -0.88
SHMT2-229ENST00000557348 ZMAT4Q9H898 229 aa9.56□□□□□ -0.88
SHMT2-229ENST00000557348 ATP5LO75964 103 aa9.55□□□□□ -0.88
SHMT2-229ENST00000557348 SRD5A1P18405 259 aa9.55□□□□□ -0.88
SHMT2-229ENST00000557348 EVI2AP22794 236 aa9.55□□□□□ -0.88
SHMT2-229ENST00000557348 RIPPLY3P57055 190 aa9.55□□□□□ -0.88
SHMT2-229ENST00000557348 ERCC8Q13216 396 aa9.55□□□□□ -0.88
SHMT2-229ENST00000557348 DUX5Q96PT3 197 aa9.55□□□□□ -0.88
SHMT2-229ENST00000557348 CCDC168Q8NDH2 2452 aa9.55□□□□□ -0.88
SHMT2-229ENST00000557348 TRAV2A0A0B4J234 112 aa9.55□□□□□ -0.88
SHMT2-229ENST00000557348 ORM1P02763 201 aa9.55□□□□□ -0.88
SHMT2-229ENST00000557348 SYNJ2BPP57105 145 aa9.55□□□□□ -0.88
SHMT2-229ENST00000557348 OR8A1Q8NGG7 326 aa9.55□□□□□ -0.88
SHMT2-229ENST00000557348 DCANP1Q8TF63 244 aa9.55□□□□□ -0.88
SHMT2-229ENST00000557348 PRELID3AQ96N28 172 aa9.55□□□□□ -0.88
SHMT2-229ENST00000557348 CSMD1Q96PZ7 3565 aa9.54□□□□□ -0.88
SHMT2-229ENST00000557348 IGLC6P0CF74 106 aa9.54□□□□□ -0.88
SHMT2-229ENST00000557348 HILS1P60008 231 aa9.54□□□□□ -0.88
SHMT2-229ENST00000557348 ATP6V0E2Q8NHE4 81 aa9.54□□□□□ -0.88
SHMT2-229ENST00000557348 ODF3Q96PU9 254 aa9.54□□□□□ -0.88
SHMT2-229ENST00000557348 CNFNQ9BYD5 112 aa9.54□□□□□ -0.88
SHMT2-229ENST00000557348 NXT2Q9NPJ8 142 aaKnown RBP9.54□□□□□ -0.88
SHMT2-229ENST00000557348 A0A096LNJ9 63 aa9.53□□□□□ -0.88
SHMT2-229ENST00000557348 TRAV21A0A0B4J279 112 aa9.53□□□□□ -0.88
SHMT2-229ENST00000557348 ZNF80P51504 273 aaPredicted RBP9.53□□□□□ -0.88
SHMT2-229ENST00000557348 C20orf173Q96LM9 149 aa9.53□□□□□ -0.88
SHMT2-229ENST00000557348 OTOGQ6ZRI0 2925 aa9.53□□□□□ -0.88
SHMT2-229ENST00000557348 AKAP9Q99996 3911 aa9.52□□□□□ -0.88
SHMT2-229ENST00000557348 ITPR3Q14573 2671 aa9.52□□□□□ -0.88
SHMT2-229ENST00000557348 GAGE12HA6NDE8 117 aa9.52□□□□□ -0.89
SHMT2-229ENST00000557348 E9PLD3 99 aa9.52□□□□□ -0.89
SHMT2-229ENST00000557348 ARMS2P0C7Q2 107 aa9.52□□□□□ -0.89
SHMT2-229ENST00000557348 LYZL1Q6UWQ5 148 aa9.52□□□□□ -0.89
SHMT2-229ENST00000557348 Q71RC1 249 aaPredicted RBP9.52□□□□□ -0.89
SHMT2-229ENST00000557348 APRG1Q8IVJ8 170 aa9.52□□□□□ -0.89
SHMT2-229ENST00000557348 NDUFA7O95182 113 aa9.51□□□□□ -0.89
SHMT2-229ENST00000557348 CSN3P07498 182 aa9.51□□□□□ -0.89
SHMT2-229ENST00000557348 IFI27P40305 119 aaPredicted RBP9.51□□□□□ -0.89
SHMT2-229ENST00000557348 CACNG7P62955 275 aa9.51□□□□□ -0.89
SHMT2-229ENST00000557348 KHDC1LQ5JSQ8 128 aa9.51□□□□□ -0.89
SHMT2-229ENST00000557348 KLHL30-AS1Q8NEE0 82 aa9.51□□□□□ -0.89
SHMT2-229ENST00000557348 OR11H1Q8NG94 326 aa9.51□□□□□ -0.89
SHMT2-229ENST00000557348 FAM19A4Q96LR4 140 aa9.51□□□□□ -0.89
SHMT2-229ENST00000557348 TPPP3Q9BW30 176 aa9.51□□□□□ -0.89
SHMT2-229ENST00000557348 ESM1Q9NQ30 184 aa9.51□□□□□ -0.89
SHMT2-229ENST00000557348 TMSB15BA0A087X1C1 80 aa9.51□□□□□ -0.89
SHMT2-229ENST00000557348 PRSS47A8MTI9 375 aa9.51□□□□□ -0.89
SHMT2-229ENST00000557348 K7EQG2 157 aa9.51□□□□□ -0.89
SHMT2-229ENST00000557348 DUSP14O95147 198 aaKnown RBP9.51□□□□□ -0.89
SHMT2-229ENST00000557348 AZU1P20160 251 aa9.51□□□□□ -0.89
SHMT2-229ENST00000557348 LEPP41159 167 aa9.51□□□□□ -0.89
SHMT2-229ENST00000557348 TWIST1Q15672 202 aa9.51□□□□□ -0.89
SHMT2-229ENST00000557348 MAP1LC3AQ9H492 121 aa9.51□□□□□ -0.89
SHMT2-229ENST00000557348 CSMD2Q7Z408 3487 aa9.5□□□□□ -0.89
SHMT2-229ENST00000557348 NCR2O95944 276 aa9.5□□□□□ -0.89
SHMT2-229ENST00000557348 MED14OSP0DP75 135 aa9.5□□□□□ -0.89
SHMT2-229ENST00000557348 FCER1GP30273 86 aa9.5□□□□□ -0.89
SHMT2-229ENST00000557348 RPL24P83731 157 aaKnown RBP9.5□□□□□ -0.89
SHMT2-229ENST00000557348 CEND1Q8N111 149 aa9.5□□□□□ -0.89
SHMT2-229ENST00000557348 ZFAND2AQ8N6M9 145 aa9.5□□□□□ -0.89
SHMT2-229ENST00000557348 PHLDA1Q8WV24 401 aaPredicted RBP9.5□□□□□ -0.89
SHMT2-229ENST00000557348 TSSC4Q9Y5U2 329 aaPredicted RBP9.5□□□□□ -0.89
SHMT2-229ENST00000557348 IGKV3-7A0A075B6H7 116 aa9.49□□□□□ -0.89
SHMT2-229ENST00000557348 TEX48A0A1B0GUV7 120 aa9.49□□□□□ -0.89
SHMT2-229ENST00000557348 D6R8Y8 96 aa9.49□□□□□ -0.89
SHMT2-229ENST00000557348 H0Y8G0 127 aa9.49□□□□□ -0.89
SHMT2-229ENST00000557348 LYRM7Q5U5X0 104 aa9.49□□□□□ -0.89
SHMT2-229ENST00000557348 SPANXB1Q9NS25 103 aaPredicted RBP9.49□□□□□ -0.89
SHMT2-229ENST00000557348 A0A1B0GWB2 263 aa9.48□□□□□ -0.89
SHMT2-229ENST00000557348 IGKCP01834 107 aa9.48□□□□□ -0.89
SHMT2-229ENST00000557348 PRB4P10163 310 aaPredicted RBP9.48□□□□□ -0.89
SHMT2-229ENST00000557348 MRAP2Q96G30 205 aa9.48□□□□□ -0.89
SHMT2-229ENST00000557348 CHAC1Q9BUX1 264 aa9.48□□□□□ -0.89
SHMT2-229ENST00000557348 SPANXA1Q9NS26 97 aa9.48□□□□□ -0.89
SHMT2-229ENST00000557348 TP73-AS1Q9UF72 201 aa9.48□□□□□ -0.89
SHMT2-229ENST00000557348 TRAV25A0A0B4J276 109 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms