RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 SHBGP04278 402 aa2.18□□□□□ -2.06
LINC00643-204ENST00000555934 IL7P13232 177 aa2.18□□□□□ -2.06
LINC00643-204ENST00000555934 PEBP1P30086 187 aaKnown RBP2.18□□□□□ -2.06
LINC00643-204ENST00000555934 CKS2P33552 79 aa2.18□□□□□ -2.06
LINC00643-204ENST00000555934 NPC2P61916 151 aa2.18□□□□□ -2.06
LINC00643-204ENST00000555934 NABP2Q9BQ15 211 aa2.18□□□□□ -2.06
LINC00643-204ENST00000555934 ATG5Q9H1Y0 275 aa2.18□□□□□ -2.06
LINC00643-204ENST00000555934 NDUFB11Q9NX14 153 aa2.18□□□□□ -2.06
LINC00643-204ENST00000555934 NHP2Q9NX24 153 aaKnown RBP2.18□□□□□ -2.06
LINC00643-204ENST00000555934 LINC00312Q9Y6C7 94 aa2.18□□□□□ -2.06
LINC00643-204ENST00000555934 ALPK3Q96L96 1907 aa2.18□□□□□ -2.06
LINC00643-204ENST00000555934 MYH13Q9UKX3 1938 aa2.18□□□□□ -2.06
LINC00643-204ENST00000555934 CITO14578 2027 aa2.18□□□□□ -2.06
LINC00643-204ENST00000555934 ERVK-7P63135 1459 aa2.18□□□□□ -2.06
LINC00643-204ENST00000555934 UGGT1Q9NYU2 1555 aa2.18□□□□□ -2.06
LINC00643-204ENST00000555934 SHPRHQ149N8 1683 aa2.18□□□□□ -2.06
LINC00643-204ENST00000555934 CCDC88AQ3V6T2 1871 aa2.18□□□□□ -2.06
LINC00643-204ENST00000555934 POLEQ07864 2286 aa2.17□□□□□ -2.06
LINC00643-204ENST00000555934 ABCC3O15438 1527 aa2.17□□□□□ -2.06
LINC00643-204ENST00000555934 CLTCL1P53675 1640 aa2.17□□□□□ -2.06
LINC00643-204ENST00000555934 ANAPC1Q9H1A4 1944 aa2.17□□□□□ -2.06
LINC00643-204ENST00000555934 TRAV7A0A075B6U4 112 aa2.17□□□□□ -2.06
LINC00643-204ENST00000555934 TMEM235A6NFC5 223 aa2.17□□□□□ -2.06
LINC00643-204ENST00000555934 FAM24AA6NFZ4 105 aa2.17□□□□□ -2.06
LINC00643-204ENST00000555934 A6NN06 94 aa2.17□□□□□ -2.06
LINC00643-204ENST00000555934 MT-ATP8P03928 68 aa2.17□□□□□ -2.06
LINC00643-204ENST00000555934 GYPBP06028 91 aa2.17□□□□□ -2.06
LINC00643-204ENST00000555934 DEFA4P12838 97 aa2.17□□□□□ -2.06
LINC00643-204ENST00000555934 ETV6P41212 452 aa2.17□□□□□ -2.06
LINC00643-204ENST00000555934 KRTAP13-4Q3LI77 160 aa2.17□□□□□ -2.06
LINC00643-204ENST00000555934 ASB16-AS1Q495Z4 193 aa2.17□□□□□ -2.06
LINC00643-204ENST00000555934 PSMF1Q92530 271 aa2.17□□□□□ -2.06
LINC00643-204ENST00000555934 POP5Q969H6 163 aaKnown RBP2.17□□□□□ -2.06
LINC00643-204ENST00000555934 HYLS1Q96M11 299 aa2.17□□□□□ -2.06
LINC00643-204ENST00000555934 Q9BRP9 147 aa2.17□□□□□ -2.06
LINC00643-204ENST00000555934 MED9Q9NWA0 146 aa2.17□□□□□ -2.06
LINC00643-204ENST00000555934 BET1LQ9NYM9 111 aa2.17□□□□□ -2.06
LINC00643-204ENST00000555934 TIMM9Q9Y5J7 89 aa2.17□□□□□ -2.06
LINC00643-204ENST00000555934 PXDNLA1KZ92 1463 aa2.17□□□□□ -2.06
LINC00643-204ENST00000555934 CFAP74Q9C0B2 1584 aa2.17□□□□□ -2.06
LINC00643-204ENST00000555934 ZC3H13Q5T200 1668 aaKnown RBP2.17□□□□□ -2.06
LINC00643-204ENST00000555934 PIK3C2BO00750 1634 aa2.17□□□□□ -2.06
LINC00643-204ENST00000555934 ATP7AQ04656 1500 aa2.17□□□□□ -2.06
LINC00643-204ENST00000555934 NEXMIFQ5QGS0 1516 aa2.17□□□□□ -2.06
LINC00643-204ENST00000555934 MYO5AQ9Y4I1 1855 aaKnown RBP2.16□□□□□ -2.06
LINC00643-204ENST00000555934 RBBP6Q7Z6E9 1792 aaKnown RBP2.16□□□□□ -2.06
LINC00643-204ENST00000555934 CLTCQ00610 1675 aaKnown RBP2.16□□□□□ -2.06
LINC00643-204ENST00000555934 CDK12Q9NYV4 1490 aaPredicted RBP2.16□□□□□ -2.06
LINC00643-204ENST00000555934 TRBV10-2A0A0K0K1G8 114 aa2.16□□□□□ -2.06
LINC00643-204ENST00000555934 FXYD2P54710 66 aa2.16□□□□□ -2.06
LINC00643-204ENST00000555934 RPL26P61254 145 aaKnown RBP2.16□□□□□ -2.06
LINC00643-204ENST00000555934 FAM74A1Q5RGS3 127 aa2.16□□□□□ -2.06
LINC00643-204ENST00000555934 FAM27BQ5VT28 67 aa2.16□□□□□ -2.06
LINC00643-204ENST00000555934 LYZL1Q6UWQ5 148 aa2.16□□□□□ -2.06
LINC00643-204ENST00000555934 ATP11AUNQ6ZP68 121 aa2.16□□□□□ -2.06
LINC00643-204ENST00000555934 FP248Q71RG6 208 aaPredicted RBP2.16□□□□□ -2.06
LINC00643-204ENST00000555934 Q8IYB0 196 aa2.16□□□□□ -2.06
LINC00643-204ENST00000555934 OR2T35Q8NGX2 323 aa2.16□□□□□ -2.06
LINC00643-204ENST00000555934 ATP6V0E2Q8NHE4 81 aa2.16□□□□□ -2.06
LINC00643-204ENST00000555934 C10orf105Q8TEF2 133 aa2.16□□□□□ -2.06
LINC00643-204ENST00000555934 DSCR8Q96T75 97 aa2.16□□□□□ -2.06
LINC00643-204ENST00000555934 FAM215AQ9Y5M1 114 aa2.16□□□□□ -2.06
LINC00643-204ENST00000555934 LY96Q9Y6Y9 160 aa2.16□□□□□ -2.06
LINC00643-204ENST00000555934 LRRC7Q96NW7 1537 aa2.16□□□□□ -2.06
LINC00643-204ENST00000555934 MLH3Q9UHC1 1453 aa2.15□□□□□ -2.06
LINC00643-204ENST00000555934 DOCK10Q96BY6 2186 aa2.15□□□□□ -2.07
LINC00643-204ENST00000555934 IGHV1-24A0A0C4DH33 117 aa2.15□□□□□ -2.07
LINC00643-204ENST00000555934 hDV103S1A0JD37 113 aa2.15□□□□□ -2.07
LINC00643-204ENST00000555934 C17orf112F2Z3M2 114 aa2.15□□□□□ -2.07
LINC00643-204ENST00000555934 H7C2G1 150 aa2.15□□□□□ -2.07
LINC00643-204ENST00000555934 J3QLW9 94 aa2.15□□□□□ -2.07
LINC00643-204ENST00000555934 SNCGO76070 127 aa2.15□□□□□ -2.07
LINC00643-204ENST00000555934 NDUFB6O95139 128 aa2.15□□□□□ -2.07
LINC00643-204ENST00000555934 IGLV1-51P01701 117 aa2.15□□□□□ -2.07
LINC00643-204ENST00000555934 CLPSP04118 112 aa2.15□□□□□ -2.07
LINC00643-204ENST00000555934 IL5P05113 134 aa2.15□□□□□ -2.07
LINC00643-204ENST00000555934 Q0VG73 95 aa2.15□□□□□ -2.07
LINC00643-204ENST00000555934 ESRGQ1W209 222 aa2.15□□□□□ -2.07
LINC00643-204ENST00000555934 Q8N814 137 aa2.15□□□□□ -2.07
LINC00643-204ENST00000555934 VSTM2AQ8TAG5 236 aa2.15□□□□□ -2.07
LINC00643-204ENST00000555934 SPTSSAQ969W0 71 aa2.15□□□□□ -2.07
LINC00643-204ENST00000555934 CST11Q9H112 138 aa2.15□□□□□ -2.07
LINC00643-204ENST00000555934 NPVFQ9HCQ7 196 aa2.15□□□□□ -2.07
LINC00643-204ENST00000555934 TMEM242Q9NWH2 141 aa2.15□□□□□ -2.07
LINC00643-204ENST00000555934 PTPRBP23467 1997 aa2.15□□□□□ -2.07
LINC00643-204ENST00000555934 SCN8AQ9UQD0 1980 aa2.15□□□□□ -2.07
LINC00643-204ENST00000555934 ATP7BP35670 1465 aa2.14□□□□□ -2.07
LINC00643-204ENST00000555934 CHD1O14646 1710 aa2.14□□□□□ -2.07
LINC00643-204ENST00000555934 TULP4Q9NRJ4 1543 aa2.14□□□□□ -2.07
LINC00643-204ENST00000555934 IGKV2D-26A0A0A0MRZ7 120 aa2.14□□□□□ -2.07
LINC00643-204ENST00000555934 TRAV3A0A0B4J244 114 aa2.14□□□□□ -2.07
LINC00643-204ENST00000555934 RBAKDNA6NC62 111 aa2.14□□□□□ -2.07
LINC00643-204ENST00000555934 B4DSR2 109 aa2.14□□□□□ -2.07
LINC00643-204ENST00000555934 H3BQ15 152 aa2.14□□□□□ -2.07
LINC00643-204ENST00000555934 M0R233 179 aa2.14□□□□□ -2.07
LINC00643-204ENST00000555934 TPRXLQ17RH7 258 aa2.14□□□□□ -2.07
LINC00643-204ENST00000555934 C12orf73Q69YU5 71 aa2.14□□□□□ -2.07
LINC00643-204ENST00000555934 Q6ZQT0 140 aa2.14□□□□□ -2.07
LINC00643-204ENST00000555934 Q6ZS52 159 aa2.14□□□□□ -2.07
LINC00643-204ENST00000555934 CPSF1Q10570 1443 aaKnown RBP2.14□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms