RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 TMEM244Q5VVB8 128 aa0.72□□□□□ -2.29
PRPF39-208ENST00000554785 AMMECR1LQ6DCA0 310 aa0.72□□□□□ -2.29
PRPF39-208ENST00000554785 CLPSL2Q6UWE3 100 aa0.72□□□□□ -2.29
PRPF39-208ENST00000554785 TOMM20LQ6UXN7 152 aa0.72□□□□□ -2.29
PRPF39-208ENST00000554785 Q6ZTI0 123 aa0.72□□□□□ -2.29
PRPF39-208ENST00000554785 GDPD1Q8N9F7 314 aa0.72□□□□□ -2.29
PRPF39-208ENST00000554785 BPIFB6Q8NFQ5 453 aa0.72□□□□□ -2.29
PRPF39-208ENST00000554785 OR5AK2Q8NH90 309 aa0.72□□□□□ -2.29
PRPF39-208ENST00000554785 OR10J5Q8NHC4 309 aa0.72□□□□□ -2.29
PRPF39-208ENST00000554785 CMTM2Q8TAZ6 248 aa0.72□□□□□ -2.29
PRPF39-208ENST00000554785 SCGB1C1Q8TD33 95 aa0.72□□□□□ -2.29
PRPF39-208ENST00000554785 TLCD1Q96CP7 247 aa0.72□□□□□ -2.29
PRPF39-208ENST00000554785 FMC1Q96HJ9 113 aa0.72□□□□□ -2.29
PRPF39-208ENST00000554785 LINC01587Q99440 93 aa0.72□□□□□ -2.29
PRPF39-208ENST00000554785 GINS3Q9BRX5 216 aa0.72□□□□□ -2.29
PRPF39-208ENST00000554785 ANAPC13Q9BS18 74 aa0.72□□□□□ -2.29
PRPF39-208ENST00000554785 ZNF436Q9C0F3 470 aaPredicted RBP0.72□□□□□ -2.29
PRPF39-208ENST00000554785 YIPF3Q9GZM5 350 aa0.72□□□□□ -2.29
PRPF39-208ENST00000554785 FGFR1OP2Q9NVK5 253 aa0.72□□□□□ -2.29
PRPF39-208ENST00000554785 GID8Q9NWU2 228 aa0.72□□□□□ -2.29
PRPF39-208ENST00000554785 MRPL16Q9NX20 251 aaKnown RBP0.72□□□□□ -2.29
PRPF39-208ENST00000554785 MRPL36Q9P0J6 103 aaKnown RBP0.72□□□□□ -2.29
PRPF39-208ENST00000554785 RBM12B-AS1Q9P1G2 102 aa0.72□□□□□ -2.29
PRPF39-208ENST00000554785 CD300AQ9UGN4 299 aa0.72□□□□□ -2.29
PRPF39-208ENST00000554785 AK3Q9UIJ7 227 aa0.72□□□□□ -2.29
PRPF39-208ENST00000554785 C14orf166Q9Y224 244 aaKnown RBP0.72□□□□□ -2.29
PRPF39-208ENST00000554785 MRPS16Q9Y3D3 137 aaKnown RBP0.72□□□□□ -2.29
PRPF39-208ENST00000554785 LOC100506127A0A0U1RQW1 187 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 A0A1B0GW15 77 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 PGPA6NDG6 321 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 MEIS3P1A6NDR6 274 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 TMEM235A6NFC5 223 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 OR4C45A6NMZ5 311 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 BBIP1A8MTZ0 92 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 BOLA2-SMG1P6H3BVE0 249 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 CREBL2O60519 120 aaPredicted RBP0.71□□□□□ -2.3
PRPF39-208ENST00000554785 APOA1P02647 267 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 CD2P06729 351 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 COX4I1P13073 169 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 HLA-DRB4P13762 266 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 NPPCP23582 126 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 SRIP30626 198 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 G6PCP35575 357 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 ETV1P50549 477 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 PSME3P61289 254 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 TSPAN5P62079 268 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 SNRPGP62308 76 aaKnown RBP0.71□□□□□ -2.3
PRPF39-208ENST00000554785 RHOBP62745 196 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 MEF2BQ02080 365 aaPredicted RBP0.71□□□□□ -2.3
PRPF39-208ENST00000554785 HIST1H1AQ02539 215 aaPredicted RBP0.71□□□□□ -2.3
PRPF39-208ENST00000554785 ACSM3Q53FZ2 586 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 TNFAIP8L3Q5GJ75 292 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 OR10J3Q5JRS4 329 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 RBM48Q5RL73 367 aaKnown RBP0.71□□□□□ -2.3
PRPF39-208ENST00000554785 AADACL4Q5VUY2 407 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 ELP2Q6IA86 826 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 Q6ZQT7 251 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 Q6ZSA8 131 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 DEFB107AQ8IZN7 70 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 ZFP82Q8N141 532 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 C3orf22Q8N5N4 141 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 PXT1Q8NFP0 134 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 PPP1R14BQ96C90 147 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 GPR146Q96CH1 333 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 CPNE2Q96FN4 548 aaPredicted RBP0.71□□□□□ -2.3
PRPF39-208ENST00000554785 ARHGAP5-AS1Q96IT6 56 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 CMSS1Q9BQ75 279 aaKnown RBP0.71□□□□□ -2.3
PRPF39-208ENST00000554785 UPK3BQ9BT76 320 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 SLC25A31Q9H0C2 315 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 OR51E2Q9H255 320 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 RHOFQ9HBH0 211 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 SPACA1Q9HBV2 294 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 TMBIM4Q9HC24 238 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 TMEM138Q9NPI0 162 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 SAR1AQ9NR31 198 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 BAIAP2Q9UQB8 552 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 CARHSP1Q9Y2V2 147 aaKnown RBP0.71□□□□□ -2.3
PRPF39-208ENST00000554785 TIMM8BQ9Y5J9 83 aaPredicted RBP0.71□□□□□ -2.3
PRPF39-208ENST00000554785 HLA-DRB4X5D2U9 266 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 TNXBP22105 4242 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 TRAV8-3A0A0A6YYJ7 113 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 IGHV3-73A0A0B4J1V6 119 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 TRGV4A0A0C4DH28 118 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 A8MWP4 228 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 C9JCJ5 164 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 M0QXV9 152 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 FABP7O15540 132 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 CRXO43186 299 aaPredicted RBP0.71□□□□□ -2.3
PRPF39-208ENST00000554785 SYNGR2O43760 224 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 HIST1H1BP16401 226 aaKnown RBP0.71□□□□□ -2.3
PRPF39-208ENST00000554785 CD36P16671 472 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 LGALS3P17931 250 aaKnown RBP0.71□□□□□ -2.3
PRPF39-208ENST00000554785 PSG9Q00887 426 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 FLOT2Q14254 428 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 TRAM1Q15629 374 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 ACOT6Q3I5F7 207 aaPredicted RBP0.71□□□□□ -2.3
PRPF39-208ENST00000554785 KRTAP25-1Q3LHN0 102 aa0.71□□□□□ -2.3
PRPF39-208ENST00000554785 LGALSLQ3ZCW2 172 aaPredicted RBP0.71□□□□□ -2.3
PRPF39-208ENST00000554785 IBA57Q5T440 356 aaKnown RBP0.71□□□□□ -2.3
PRPF39-208ENST00000554785 AADACL3Q5VUY0 350 aa0.71□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 84.9 ms