RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 MORN2Q502X0 79 aa2.22□□□□□ -2.05
LIMA1-208ENST00000551691 DNLZQ5SXM8 178 aa2.22□□□□□ -2.05
LIMA1-208ENST00000551691 AMTNQ6UX39 209 aa2.22□□□□□ -2.05
LIMA1-208ENST00000551691 ZNF833PQ6ZTB9 187 aa2.22□□□□□ -2.05
LIMA1-208ENST00000551691 Q8IYB0 196 aa2.22□□□□□ -2.05
LIMA1-208ENST00000551691 C3orf22Q8N5N4 141 aa2.22□□□□□ -2.05
LIMA1-208ENST00000551691 OR10K1Q8NGX5 313 aa2.22□□□□□ -2.05
LIMA1-208ENST00000551691 OR10AC1Q8NH08 325 aa2.22□□□□□ -2.05
LIMA1-208ENST00000551691 OTOSQ8NHW6 89 aa2.22□□□□□ -2.05
LIMA1-208ENST00000551691 MND1Q9BWT6 205 aa2.22□□□□□ -2.05
LIMA1-208ENST00000551691 NKX6-2Q9C056 277 aaPredicted RBP2.22□□□□□ -2.05
LIMA1-208ENST00000551691 DUSP21Q9H596 190 aa2.22□□□□□ -2.05
LIMA1-208ENST00000551691 TMEM14BQ9NUH8 114 aa2.22□□□□□ -2.05
LIMA1-208ENST00000551691 H3BQ85 93 aa2.21□□□□□ -2.06
LIMA1-208ENST00000551691 M0R381 172 aa2.21□□□□□ -2.06
LIMA1-208ENST00000551691 MRPS14O60783 128 aaKnown RBP2.21□□□□□ -2.06
LIMA1-208ENST00000551691 CYB5AP00167 134 aa2.21□□□□□ -2.06
LIMA1-208ENST00000551691 OR5G3P0C626 314 aa2.21□□□□□ -2.06
LIMA1-208ENST00000551691 RBP2P50120 134 aa2.21□□□□□ -2.06
LIMA1-208ENST00000551691 FXYD7P58549 80 aa2.21□□□□□ -2.06
LIMA1-208ENST00000551691 FLI1Q01543 452 aaPredicted RBP2.21□□□□□ -2.06
LIMA1-208ENST00000551691 CDK10Q15131 360 aa2.21□□□□□ -2.06
LIMA1-208ENST00000551691 C10orf91Q5T1B1 145 aa2.21□□□□□ -2.06
LIMA1-208ENST00000551691 C1orf194Q5T5A4 169 aa2.21□□□□□ -2.06
LIMA1-208ENST00000551691 HACD4Q5VWC8 232 aa2.21□□□□□ -2.06
LIMA1-208ENST00000551691 SFXN4Q6P4A7 337 aa2.21□□□□□ -2.06
LIMA1-208ENST00000551691 IDO2Q6ZQW0 420 aa2.21□□□□□ -2.06
LIMA1-208ENST00000551691 SCXQ7RTU7 201 aa2.21□□□□□ -2.06
LIMA1-208ENST00000551691 H1FOOQ8IZA3 346 aaPredicted RBP2.21□□□□□ -2.06
LIMA1-208ENST00000551691 RNF182Q8N6D2 247 aa2.21□□□□□ -2.06
LIMA1-208ENST00000551691 OR1L8Q8NGR8 309 aa2.21□□□□□ -2.06
LIMA1-208ENST00000551691 OR4K15Q8NH41 348 aa2.21□□□□□ -2.06
LIMA1-208ENST00000551691 MCFD2Q8NI22 146 aa2.21□□□□□ -2.06
LIMA1-208ENST00000551691 BORCS7Q96B45 105 aa2.21□□□□□ -2.06
LIMA1-208ENST00000551691 ADAT3Q96EY9 351 aaPredicted RBP2.21□□□□□ -2.06
LIMA1-208ENST00000551691 CPNE2Q96FN4 548 aaPredicted RBP2.21□□□□□ -2.06
LIMA1-208ENST00000551691 OR52A1Q9UKL2 312 aa2.21□□□□□ -2.06
LIMA1-208ENST00000551691 TMEM30CPA0ZSE6 113 aa2.2□□□□□ -2.06
LIMA1-208ENST00000551691 SMIM9A6NGZ8 99 aa2.2□□□□□ -2.06
LIMA1-208ENST00000551691 FAM223BA6NKX1 122 aa2.2□□□□□ -2.06
LIMA1-208ENST00000551691 OR4C45A6NMZ5 311 aa2.2□□□□□ -2.06
LIMA1-208ENST00000551691 E7EUB6 86 aa2.2□□□□□ -2.06
LIMA1-208ENST00000551691 SYNGR2O43760 224 aa2.2□□□□□ -2.06
LIMA1-208ENST00000551691 ORC5O43913 435 aa2.2□□□□□ -2.06
LIMA1-208ENST00000551691 RPS11P62280 158 aaKnown RBP eCLIP2.2□□□□□ -2.06
LIMA1-208ENST00000551691 RANP62826 216 aaKnown RBP2.2□□□□□ -2.06
LIMA1-208ENST00000551691 TMEM97Q5BJF2 176 aa2.2□□□□□ -2.06
LIMA1-208ENST00000551691 C10orf55Q5SWW7 151 aa2.2□□□□□ -2.06
LIMA1-208ENST00000551691 FAM223AQ8IWN6 122 aa2.2□□□□□ -2.06
LIMA1-208ENST00000551691 RAB2BQ8WUD1 216 aa2.2□□□□□ -2.06
LIMA1-208ENST00000551691 SIGMAR1Q99720 223 aa2.2□□□□□ -2.06
LIMA1-208ENST00000551691 ZNF2Q9BSG1 426 aaPredicted RBP2.2□□□□□ -2.06
LIMA1-208ENST00000551691 C9orf16Q9BUW7 83 aa2.2□□□□□ -2.06
LIMA1-208ENST00000551691 COMMD5Q9GZQ3 224 aa2.2□□□□□ -2.06
LIMA1-208ENST00000551691 ARMC1Q9NVT9 282 aa2.2□□□□□ -2.06
LIMA1-208ENST00000551691 UFC1Q9Y3C8 167 aa2.2□□□□□ -2.06
LIMA1-208ENST00000551691 MRPS16Q9Y3D3 137 aaKnown RBP2.2□□□□□ -2.06
LIMA1-208ENST00000551691 FAM32AQ9Y421 112 aaKnown RBP2.2□□□□□ -2.06
LIMA1-208ENST00000551691 V9GYQ6 96 aa2.2□□□□□ -2.06
LIMA1-208ENST00000551691 IGKV1OR2-108A0A075B7D4 117 aa2.19□□□□□ -2.06
LIMA1-208ENST00000551691 A0A0J9YY99 117 aa2.19□□□□□ -2.06
LIMA1-208ENST00000551691 GRIFINA4D1Z8 144 aa2.19□□□□□ -2.06
LIMA1-208ENST00000551691 LRCOL1A6NCL2 159 aa2.19□□□□□ -2.06
LIMA1-208ENST00000551691 APOMO95445 188 aa2.19□□□□□ -2.06
LIMA1-208ENST00000551691 CRYZL1O95825 349 aa2.19□□□□□ -2.06
LIMA1-208ENST00000551691 CRYGDP07320 174 aa2.19□□□□□ -2.06
LIMA1-208ENST00000551691 DEFB130BP0DP73 79 aa2.19□□□□□ -2.06
LIMA1-208ENST00000551691 DEFB130AP0DP74 79 aa2.19□□□□□ -2.06
LIMA1-208ENST00000551691 ESDP10768 282 aa2.19□□□□□ -2.06
LIMA1-208ENST00000551691 LPAR6P43657 344 aa2.19□□□□□ -2.06
LIMA1-208ENST00000551691 LINC00313P59037 77 aa2.19□□□□□ -2.06
LIMA1-208ENST00000551691 DEFB1P60022 68 aa2.19□□□□□ -2.06
LIMA1-208ENST00000551691 ACOT6Q3I5F7 207 aaPredicted RBP2.19□□□□□ -2.06
LIMA1-208ENST00000551691 BCL2L15Q5TBC7 163 aa2.19□□□□□ -2.06
LIMA1-208ENST00000551691 Q6ZSA8 131 aa2.19□□□□□ -2.06
LIMA1-208ENST00000551691 TTC9CQ8N5M4 171 aa2.19□□□□□ -2.06
LIMA1-208ENST00000551691 OR13C8Q8NGS7 320 aa2.19□□□□□ -2.06
LIMA1-208ENST00000551691 LHFPL5Q8TAF8 219 aa2.19□□□□□ -2.06
LIMA1-208ENST00000551691 GNPDA2Q8TDQ7 276 aa2.19□□□□□ -2.06
LIMA1-208ENST00000551691 AP3S1Q92572 193 aa2.19□□□□□ -2.06
LIMA1-208ENST00000551691 GNPNAT1Q96EK6 184 aaPredicted RBP2.19□□□□□ -2.06
LIMA1-208ENST00000551691 CNBD2Q96M20 576 aa2.19□□□□□ -2.06
LIMA1-208ENST00000551691 RHPN1-AS1Q9BWJ2 59 aa2.19□□□□□ -2.06
LIMA1-208ENST00000551691 VCX3BQ9H321 246 aa2.19□□□□□ -2.06
LIMA1-208ENST00000551691 TAF9BQ9HBM6 251 aa2.19□□□□□ -2.06
LIMA1-208ENST00000551691 SMPXQ9UHP9 88 aa2.19□□□□□ -2.06
LIMA1-208ENST00000551691 AK3Q9UIJ7 227 aa2.19□□□□□ -2.06
LIMA1-208ENST00000551691 TRAPPC2LQ9UL33 140 aa2.19□□□□□ -2.06
LIMA1-208ENST00000551691 ANAPC10Q9UM13 185 aa2.19□□□□□ -2.06
LIMA1-208ENST00000551691 PRELID3BQ9Y3B1 194 aa2.19□□□□□ -2.06
LIMA1-208ENST00000551691 SAMHD1Q9Y3Z3 626 aaKnown RBP2.19□□□□□ -2.06
LIMA1-208ENST00000551691 IGSF23A1L1A6 192 aa2.18□□□□□ -2.06
LIMA1-208ENST00000551691 OR2T8A6NH00 312 aa2.18□□□□□ -2.06
LIMA1-208ENST00000551691 A8MUU9 505 aa2.18□□□□□ -2.06
LIMA1-208ENST00000551691 AIPO00170 330 aa2.18□□□□□ -2.06
LIMA1-208ENST00000551691 GEMIN2O14893 280 aaKnown RBP2.18□□□□□ -2.06
LIMA1-208ENST00000551691 PSCAO43653 123 aa2.18□□□□□ -2.06
LIMA1-208ENST00000551691 OR7C1O76099 320 aaPredicted RBP2.18□□□□□ -2.06
LIMA1-208ENST00000551691 ZNF705DP0CH99 300 aaPredicted RBP2.18□□□□□ -2.06
LIMA1-208ENST00000551691 CCL1P22362 96 aa2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms