RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 OR4D5Q8NGN0 318 aa2.36□□□□□ -2.03
LIMA1-206ENST00000550611 OR10J6PQ8NGY7 276 aa2.36□□□□□ -2.03
LIMA1-206ENST00000550611 MRPL53Q96EL3 112 aaKnown RBP2.36□□□□□ -2.03
LIMA1-206ENST00000550611 C16orf74Q96GX8 76 aa2.36□□□□□ -2.03
LIMA1-206ENST00000550611 ACY3Q96HD9 319 aa2.36□□□□□ -2.03
LIMA1-206ENST00000550611 LINC01587Q99440 93 aa2.36□□□□□ -2.03
LIMA1-206ENST00000550611 RSG1Q9BU20 258 aa2.36□□□□□ -2.03
LIMA1-206ENST00000550611 PBDC1Q9BVG4 233 aa2.36□□□□□ -2.03
LIMA1-206ENST00000550611 NKX6-2Q9C056 277 aaPredicted RBP2.36□□□□□ -2.03
LIMA1-206ENST00000550611 SPANXA1Q9NS26 97 aa2.36□□□□□ -2.03
LIMA1-206ENST00000550611 PIGBOS1A0A0B4J2F0 54 aa2.35□□□□□ -2.03
LIMA1-206ENST00000550611 F6UZH7 168 aa2.35□□□□□ -2.03
LIMA1-206ENST00000550611 K7EQD1 137 aa2.35□□□□□ -2.03
LIMA1-206ENST00000550611 NXPH4O95158 308 aa2.35□□□□□ -2.03
LIMA1-206ENST00000550611 OXTP01178 125 aa2.35□□□□□ -2.03
LIMA1-206ENST00000550611 GALR1P47211 349 aa2.35□□□□□ -2.03
LIMA1-206ENST00000550611 AKR1C2P52895 323 aa2.35□□□□□ -2.03
LIMA1-206ENST00000550611 GABARAPL2P60520 117 aa2.35□□□□□ -2.03
LIMA1-206ENST00000550611 EIF5AP63241 154 aaKnown RBP2.35□□□□□ -2.03
LIMA1-206ENST00000550611 DAZ2Q13117 558 aaKnown RBP2.35□□□□□ -2.03
LIMA1-206ENST00000550611 SCGB2B2Q4G0G5 96 aa2.35□□□□□ -2.03
LIMA1-206ENST00000550611 UBE2NLQ5JXB2 153 aa2.35□□□□□ -2.03
LIMA1-206ENST00000550611 EIF5AL1Q6IS14 154 aaKnown RBP2.35□□□□□ -2.03
LIMA1-206ENST00000550611 STEAP1BQ6NZ63 245 aa2.35□□□□□ -2.03
LIMA1-206ENST00000550611 LYPD5Q6UWN5 251 aa2.35□□□□□ -2.03
LIMA1-206ENST00000550611 Q6ZSA8 131 aa2.35□□□□□ -2.03
LIMA1-206ENST00000550611 TMEM144Q7Z5S9 345 aa2.35□□□□□ -2.03
LIMA1-206ENST00000550611 BOD1L2Q8IYS8 172 aa2.35□□□□□ -2.03
LIMA1-206ENST00000550611 SVBPQ8N300 66 aa2.35□□□□□ -2.03
LIMA1-206ENST00000550611 C9orf62Q8N4C0 152 aa2.35□□□□□ -2.03
LIMA1-206ENST00000550611 OR8A1Q8NGG7 326 aa2.35□□□□□ -2.03
LIMA1-206ENST00000550611 ZNF431Q8TF32 576 aaPredicted RBP2.35□□□□□ -2.03
LIMA1-206ENST00000550611 DEFB104AQ8WTQ1 72 aa2.35□□□□□ -2.03
LIMA1-206ENST00000550611 TMEM263Q8WUH6 116 aaKnown RBP2.35□□□□□ -2.03
LIMA1-206ENST00000550611 TRGV9Q99603 122 aa2.35□□□□□ -2.03
LIMA1-206ENST00000550611 OPRPNQ99935 248 aaPredicted RBP2.35□□□□□ -2.03
LIMA1-206ENST00000550611 C20orf144Q9BQM9 153 aa2.35□□□□□ -2.03
LIMA1-206ENST00000550611 RTBDNQ9BSG5 229 aaPredicted RBP2.35□□□□□ -2.03
LIMA1-206ENST00000550611 CCDC32Q9BV29 185 aa2.35□□□□□ -2.03
LIMA1-206ENST00000550611 SLC25A39Q9BZJ4 359 aaPredicted RBP2.35□□□□□ -2.03
LIMA1-206ENST00000550611 TMEM222Q9H0R3 208 aa2.35□□□□□ -2.03
LIMA1-206ENST00000550611 TMEM56-RWDD3S4R434 201 aa2.35□□□□□ -2.03
LIMA1-206ENST00000550611 TGIF2-C20orf24A0A0A6YYL0 155 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 TRBV7-9A0A0J9YWB2 115 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 A0A0U1RRA0 63 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 ZFP92A6NM28 416 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 CEBPZOSA8MTT3 80 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 H7BYZ3 331 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 SLC17A3O00476 420 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 MRPS12O15235 138 aaKnown RBP2.34□□□□□ -2.03
LIMA1-206ENST00000550611 PDE6DO43924 150 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 ZNF324O75467 553 aaPredicted RBP2.34□□□□□ -2.03
LIMA1-206ENST00000550611 CFDP00746 253 aaPredicted RBP2.34□□□□□ -2.03
LIMA1-206ENST00000550611 CD3DP04234 171 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 TCRBP04435 133 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 OR5AC1P0C628 307 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 PGAM2P15259 253 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 CXCL3P19876 107 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 FGF7P21781 194 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 S100A7P31151 101 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 TGFBR1P36897 503 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 CRYBA4P53673 196 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 LYZP61626 148 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 SELENOTP62341 195 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 FABP9Q0Z7S8 132 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 OR2F1Q13607 317 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 MEF2DQ14814 521 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 GCSAMLQ5JQS6 135 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 COL5A1-AS1Q5SY13 56 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 Q6ZTI0 123 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 LGI3Q8N145 548 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 RNF182Q8N6D2 247 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 SAMD12Q8N8I0 201 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 Q8NBF4 154 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 OR10G7Q8NGN6 311 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 OR1B1Q8NGR6 318 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 OR13C8Q8NGS7 320 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 IL22RA2Q969J5 263 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 GPR82Q96P67 336 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 CACFD1Q9UGQ2 172 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 ZFP30Q9Y2G7 519 aa2.34□□□□□ -2.03
LIMA1-206ENST00000550611 TRAV9-2A0A087WT02 112 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 TMEM218A2RU14 115 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 CRYM-AS1A6NIL9 109 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 H3BRN7 92 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 HPGDSO60760 199 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 PITX3O75364 302 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 MT1HL1P0DM35 61 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 SULT1A3P0DMM9 295 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 SULT1A4P0DMN0 295 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 HTN1P15515 57 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 TBPP20226 339 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 GATA2P23769 480 aaPredicted RBP2.33□□□□□ -2.04
LIMA1-206ENST00000550611 PLP1P60201 277 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 CKS1BP61024 79 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 RRAS2P62070 204 aaPredicted RBP2.33□□□□□ -2.04
LIMA1-206ENST00000550611 RHOBP62745 196 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 HIST1H1AQ02539 215 aaPredicted RBP2.33□□□□□ -2.04
LIMA1-206ENST00000550611 PEA15Q15121 130 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 NEDD8Q15843 81 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms