RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 SCGB3A1Q96QR1 104 aa11.38□□□□□ -0.59
USP28-214ENST00000545540 MOB4Q9Y3A3 225 aa11.38□□□□□ -0.59
USP28-214ENST00000545540 TRAV12-2A0A075B6T6 113 aa11.38□□□□□ -0.59
USP28-214ENST00000545540 FAM74A4Q5TZK3 123 aa11.38□□□□□ -0.59
USP28-214ENST00000545540 K7EP34 96 aa11.38□□□□□ -0.59
USP28-214ENST00000545540 RHPN1-AS1Q9BWJ2 59 aa11.38□□□□□ -0.59
USP28-214ENST00000545540 CYSLTR1Q9Y271 337 aa11.38□□□□□ -0.59
USP28-214ENST00000545540 HTN1P15515 57 aa11.37□□□□□ -0.59
USP28-214ENST00000545540 RAB9AP51151 201 aa11.37□□□□□ -0.59
USP28-214ENST00000545540 SRSF1Q07955 248 aaKnown RBP eCLIP11.37□□□□□ -0.59
USP28-214ENST00000545540 HIST1H4GQ99525 98 aa11.37□□□□□ -0.59
USP28-214ENST00000545540 IGHV1-69DA0A0B4J2H0 117 aa11.37□□□□□ -0.59
USP28-214ENST00000545540 RBAKDNA6NC62 111 aa11.37□□□□□ -0.59
USP28-214ENST00000545540 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.37□□□□□ -0.59
USP28-214ENST00000545540 AVPP01185 164 aa11.37□□□□□ -0.59
USP28-214ENST00000545540 IGHV1-69P01742 117 aa11.37□□□□□ -0.59
USP28-214ENST00000545540 KLHL30-AS1Q8NEE0 82 aa11.37□□□□□ -0.59
USP28-214ENST00000545540 F5H697 171 aa11.37□□□□□ -0.59
USP28-214ENST00000545540 ZMAT4Q9H898 229 aa11.37□□□□□ -0.59
USP28-214ENST00000545540 JMJD1CQ15652 2540 aa11.36□□□□□ -0.59
USP28-214ENST00000545540 IGHV4-30-2A0A087WSY4 118 aa11.36□□□□□ -0.59
USP28-214ENST00000545540 TRAV12-3A0A0B4J271 114 aa11.36□□□□□ -0.59
USP28-214ENST00000545540 FABP2P12104 132 aa11.36□□□□□ -0.59
USP28-214ENST00000545540 SMIM2Q9BVW6 85 aa11.36□□□□□ -0.59
USP28-214ENST00000545540 U3KQE9 123 aa11.36□□□□□ -0.59
USP28-214ENST00000545540 K7ERU9 68 aa11.35□□□□□ -0.59
USP28-214ENST00000545540 SUMO2P61956 95 aaKnown RBP11.35□□□□□ -0.59
USP28-214ENST00000545540 LINC00477Q96M19 166 aa11.35□□□□□ -0.59
USP28-214ENST00000545540 CHD6Q8TD26 2715 aa11.35□□□□□ -0.59
USP28-214ENST00000545540 RPL39P62891 51 aaKnown RBP11.35□□□□□ -0.59
USP28-214ENST00000545540 CD300EQ496F6 205 aaPredicted RBP11.35□□□□□ -0.59
USP28-214ENST00000545540 NPFFR1Q9GZQ6 430 aa11.35□□□□□ -0.59
USP28-214ENST00000545540 H3BMG7 143 aa11.34□□□□□ -0.59
USP28-214ENST00000545540 ATP5LO75964 103 aa11.34□□□□□ -0.59
USP28-214ENST00000545540 PRM2P04554 102 aa11.34□□□□□ -0.59
USP28-214ENST00000545540 ZNF688P0C7X2 276 aa11.34□□□□□ -0.59
USP28-214ENST00000545540 ASIPP42127 132 aa11.34□□□□□ -0.59
USP28-214ENST00000545540 CSTL1Q9H114 145 aa11.34□□□□□ -0.59
USP28-214ENST00000545540 A0A087WX48 190 aa11.34□□□□□ -0.59
USP28-214ENST00000545540 DUSP14O95147 198 aaKnown RBP11.34□□□□□ -0.59
USP28-214ENST00000545540 UCNP55089 124 aa11.34□□□□□ -0.59
USP28-214ENST00000545540 ATP5J2P56134 94 aa11.34□□□□□ -0.59
USP28-214ENST00000545540 C2orf66Q6UXQ4 117 aa11.34□□□□□ -0.59
USP28-214ENST00000545540 CEND1Q8N111 149 aa11.34□□□□□ -0.59
USP28-214ENST00000545540 CHTOPQ9Y3Y2 248 aaKnown RBP11.34□□□□□ -0.59
USP28-214ENST00000545540 RNASE3P12724 160 aaKnown RBP11.33□□□□□ -0.6
USP28-214ENST00000545540 WFDC2Q14508 124 aa11.33□□□□□ -0.6
USP28-214ENST00000545540 C9orf139Q6ZV77 190 aa11.33□□□□□ -0.6
USP28-214ENST00000545540 SH2D6Q7Z4S9 175 aa11.33□□□□□ -0.6
USP28-214ENST00000545540 ARL6IP6Q8N6S5 226 aa11.33□□□□□ -0.6
USP28-214ENST00000545540 TRAV21A0A0B4J279 112 aa11.32□□□□□ -0.6
USP28-214ENST00000545540 TEX48A0A1B0GUV7 120 aa11.32□□□□□ -0.6
USP28-214ENST00000545540 SIVA1O15304 175 aa11.32□□□□□ -0.6
USP28-214ENST00000545540 SRSF2Q01130 221 aaKnown RBP11.32□□□□□ -0.6
USP28-214ENST00000545540 SCGB2A2Q13296 93 aa11.32□□□□□ -0.6
USP28-214ENST00000545540 OPRPNQ99935 248 aaPredicted RBP11.32□□□□□ -0.6
USP28-214ENST00000545540 KLK9Q9UKQ9 250 aa11.32□□□□□ -0.6
USP28-214ENST00000545540 ZNF256Q9Y2P7 627 aaPredicted RBP11.32□□□□□ -0.6
USP28-214ENST00000545540 PRSS29PA6NIE9 313 aa11.32□□□□□ -0.6
USP28-214ENST00000545540 CD7P09564 240 aa11.32□□□□□ -0.6
USP28-214ENST00000545540 PRRC2AP48634 2157 aaKnown RBP11.31□□□□□ -0.6
USP28-214ENST00000545540 TGFAP01135 160 aa11.31□□□□□ -0.6
USP28-214ENST00000545540 PLEKHB2Q96CS7 222 aa11.31□□□□□ -0.6
USP28-214ENST00000545540 CCL19Q99731 98 aa11.31□□□□□ -0.6
USP28-214ENST00000545540 IGHV3-64A0A075B6Q5 118 aa11.3□□□□□ -0.6
USP28-214ENST00000545540 COTL1Q14019 142 aa11.3□□□□□ -0.6
USP28-214ENST00000545540 DPH3P1Q9H4G8 78 aa11.3□□□□□ -0.6
USP28-214ENST00000545540 OR11H12B2RN74 326 aa11.3□□□□□ -0.6
USP28-214ENST00000545540 SOCS3O14543 225 aa11.3□□□□□ -0.6
USP28-214ENST00000545540 SLC25A16P16260 332 aa11.3□□□□□ -0.6
USP28-214ENST00000545540 OR11H1Q8NG94 326 aa11.3□□□□□ -0.6
USP28-214ENST00000545540 OR11H2Q8NH07 326 aa11.3□□□□□ -0.6
USP28-214ENST00000545540 PHLDA1Q8WV24 401 aaPredicted RBP11.3□□□□□ -0.6
USP28-214ENST00000545540 BAALCQ8WXS3 180 aa11.3□□□□□ -0.6
USP28-214ENST00000545540 ZNF469Q96JG9 3925 aaPredicted RBP11.3□□□□□ -0.6
USP28-214ENST00000545540 F8VRH5 84 aa11.29□□□□□ -0.6
USP28-214ENST00000545540 H7C1H1 209 aa11.29□□□□□ -0.6
USP28-214ENST00000545540 PSMG4Q5JS54 123 aa11.29□□□□□ -0.6
USP28-214ENST00000545540 IGHV3-73A0A0B4J1V6 119 aa11.29□□□□□ -0.6
USP28-214ENST00000545540 LINC01546A6NGU7 62 aa11.29□□□□□ -0.6
USP28-214ENST00000545540 FAM223BA6NKX1 122 aa11.29□□□□□ -0.6
USP28-214ENST00000545540 RNF223E7ERA6 249 aa11.29□□□□□ -0.6
USP28-214ENST00000545540 C12orf74Q32Q52 190 aa11.29□□□□□ -0.6
USP28-214ENST00000545540 SCGB1D4Q6XE38 83 aa11.29□□□□□ -0.6
USP28-214ENST00000545540 FAM223AQ8IWN6 122 aa11.29□□□□□ -0.6
USP28-214ENST00000545540 PRADC1Q9BSG0 188 aa11.29□□□□□ -0.6
USP28-214ENST00000545540 MDFICQ9P1T7 246 aa11.29□□□□□ -0.6
USP28-214ENST00000545540 NDUFA4O00483 81 aa11.29□□□□□ -0.6
USP28-214ENST00000545540 IGHV4-59P01825 116 aa11.29□□□□□ -0.6
USP28-214ENST00000545540 HLA-DRB4P13762 266 aa11.29□□□□□ -0.6
USP28-214ENST00000545540 ZNF479Q96JC4 524 aa11.29□□□□□ -0.6
USP28-214ENST00000545540 HLA-DRB4X5D2U9 266 aa11.29□□□□□ -0.6
USP28-214ENST00000545540 MTORP42345 2549 aa11.28□□□□□ -0.6
USP28-214ENST00000545540 C19orf54Q5BKX5 351 aa11.28□□□□□ -0.6
USP28-214ENST00000545540 TMEM190Q8WZ59 177 aa11.28□□□□□ -0.6
USP28-214ENST00000545540 IGLL5B9A064 214 aa11.28□□□□□ -0.6
USP28-214ENST00000545540 ETDBQ3ZM63 59 aa11.28□□□□□ -0.6
USP28-214ENST00000545540 FAM159AQ6UWV7 190 aa11.28□□□□□ -0.6
USP28-214ENST00000545540 TP53TG1Q9Y2A0 90 aa11.28□□□□□ -0.6
USP28-214ENST00000545540 PIMREGQ9BSJ6 248 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms