RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 NXPH4O95158 308 aa13.48□□□□□ -0.25
VIM-209ENST00000544301 IGKCP01834 107 aa13.48□□□□□ -0.25
VIM-209ENST00000544301 ZNF688P0C7X2 276 aa13.48□□□□□ -0.25
VIM-209ENST00000544301 SUMO2P61956 95 aaKnown RBP13.48□□□□□ -0.25
VIM-209ENST00000544301 PSMG4Q5JS54 123 aa13.48□□□□□ -0.25
VIM-209ENST00000544301 OR9G4Q8NGQ1 327 aa13.48□□□□□ -0.25
VIM-209ENST00000544301 RPL39LQ96EH5 51 aaKnown RBP13.48□□□□□ -0.25
VIM-209ENST00000544301 AP1S3Q96PC3 154 aa13.48□□□□□ -0.25
VIM-209ENST00000544301 C20orf78Q9BR46 151 aa13.48□□□□□ -0.25
VIM-209ENST00000544301 ELANEP08246 267 aa13.48□□□□□ -0.25
VIM-209ENST00000544301 MGPP08493 103 aa13.48□□□□□ -0.25
VIM-209ENST00000544301 SYNJ2BPP57105 145 aa13.48□□□□□ -0.25
VIM-209ENST00000544301 UBE2V1Q13404 147 aa13.48□□□□□ -0.25
VIM-209ENST00000544301 FAM159AQ6UWV7 190 aa13.48□□□□□ -0.25
VIM-209ENST00000544301 SIVA1O15304 175 aa13.47□□□□□ -0.25
VIM-209ENST00000544301 DPM2O94777 84 aa13.47□□□□□ -0.25
VIM-209ENST00000544301 PTTG1IPP53801 180 aa13.47□□□□□ -0.25
VIM-209ENST00000544301 BEX4Q9NWD9 120 aaPredicted RBP13.47□□□□□ -0.25
VIM-209ENST00000544301 CR1P17927 2039 aa13.47□□□□□ -0.25
VIM-209ENST00000544301 IGHV4OR15-8A0A075B7B6 117 aa13.46□□□□□ -0.25
VIM-209ENST00000544301 A0A087WW49 117 aa13.46□□□□□ -0.25
VIM-209ENST00000544301 K7EQG2 157 aa13.46□□□□□ -0.25
VIM-209ENST00000544301 HOXA3O43365 443 aaPredicted RBP13.46□□□□□ -0.25
VIM-209ENST00000544301 TRAV12-3A0A0B4J271 114 aa13.46□□□□□ -0.26
VIM-209ENST00000544301 A0A0J9YX75 114 aa13.46□□□□□ -0.26
VIM-209ENST00000544301 C7orf71A4D174 169 aa13.46□□□□□ -0.26
VIM-209ENST00000544301 LGALS9O00182 355 aa13.46□□□□□ -0.26
VIM-209ENST00000544301 SNRPD3P62318 126 aaKnown RBP13.46□□□□□ -0.26
VIM-209ENST00000544301 POM121L12Q8N7R1 296 aa13.46□□□□□ -0.26
VIM-209ENST00000544301 MUC4Q99102 2169 aa13.45□□□□□ -0.26
VIM-209ENST00000544301 DEFB113Q30KQ7 82 aa13.45□□□□□ -0.26
VIM-209ENST00000544301 ORMDL2Q53FV1 153 aa13.45□□□□□ -0.26
VIM-209ENST00000544301 UBE2E2Q96LR5 201 aa13.45□□□□□ -0.26
VIM-209ENST00000544301 ODF3Q96PU9 254 aa13.45□□□□□ -0.26
VIM-209ENST00000544301 KIF25-AS1Q9Y6Z4 181 aa13.45□□□□□ -0.26
VIM-209ENST00000544301 PTPN13Q12923 2485 aa13.45□□□□□ -0.26
VIM-209ENST00000544301 IGKV2D-26A0A0A0MRZ7 120 aa13.45□□□□□ -0.26
VIM-209ENST00000544301 SEC11AP67812 179 aa13.45□□□□□ -0.26
VIM-209ENST00000544301 ERASQ7Z444 233 aa13.45□□□□□ -0.26
VIM-209ENST00000544301 MRPL35Q9NZE8 188 aaKnown RBP13.45□□□□□ -0.26
VIM-209ENST00000544301 HOXD3P31249 432 aaPredicted RBP13.44□□□□□ -0.26
VIM-209ENST00000544301 LINC00315P59091 139 aa13.44□□□□□ -0.26
VIM-209ENST00000544301 Q5PR19 223 aa13.44□□□□□ -0.26
VIM-209ENST00000544301 ADAMTSL5Q6ZMM2 481 aa13.44□□□□□ -0.26
VIM-209ENST00000544301 DUX5Q96PT3 197 aa13.44□□□□□ -0.26
VIM-209ENST00000544301 A0A087WX48 190 aa13.43□□□□□ -0.26
VIM-209ENST00000544301 CBY3A6NI87 242 aa13.43□□□□□ -0.26
VIM-209ENST00000544301 K7EMI3 77 aa13.43□□□□□ -0.26
VIM-209ENST00000544301 CD7P09564 240 aa13.43□□□□□ -0.26
VIM-209ENST00000544301 RNF152Q8N8N0 203 aa13.43□□□□□ -0.26
VIM-209ENST00000544301 TMEM160Q9NX00 188 aa13.43□□□□□ -0.26
VIM-209ENST00000544301 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.43□□□□□ -0.26
VIM-209ENST00000544301 IGKV3-20P01619 116 aa13.43□□□□□ -0.26
VIM-209ENST00000544301 HSD52Q0P140 79 aa13.43□□□□□ -0.26
VIM-209ENST00000544301 VAMP3Q15836 100 aa13.43□□□□□ -0.26
VIM-209ENST00000544301 GTSCR1Q86UQ5 136 aa13.43□□□□□ -0.26
VIM-209ENST00000544301 TOMM6Q96B49 74 aa13.43□□□□□ -0.26
VIM-209ENST00000544301 DOPEY2Q9Y3R5 2298 aa13.43□□□□□ -0.26
VIM-209ENST00000544301 PPP1R17O96001 155 aa13.42□□□□□ -0.26
VIM-209ENST00000544301 ZC2HC1BQ5TFG8 222 aa13.42□□□□□ -0.26
VIM-209ENST00000544301 ABCA12Q86UK0 2595 aa13.42□□□□□ -0.26
VIM-209ENST00000544301 LRRC75A-AS1Q8N1F1 130 aa13.42□□□□□ -0.26
VIM-209ENST00000544301 JPT2Q9H910 190 aa13.42□□□□□ -0.26
VIM-209ENST00000544301 NAV2Q8IVL1 2488 aa13.41□□□□□ -0.26
VIM-209ENST00000544301 TRAV12-2A0A075B6T6 113 aa13.41□□□□□ -0.26
VIM-209ENST00000544301 SCGB3A1Q96QR1 104 aa13.41□□□□□ -0.26
VIM-209ENST00000544301 TEX15Q9BXT5 2789 aa13.41□□□□□ -0.26
VIM-209ENST00000544301 TRAV12-1A0A0B4J245 112 aa13.4□□□□□ -0.26
VIM-209ENST00000544301 CSTL1Q9H114 145 aa13.4□□□□□ -0.26
VIM-209ENST00000544301 PRRC2AP48634 2157 aaKnown RBP13.4□□□□□ -0.26
VIM-209ENST00000544301 IGHV3-16A0A0C4DH30 117 aa13.4□□□□□ -0.26
VIM-209ENST00000544301 Q96MF0 132 aa13.4□□□□□ -0.26
VIM-209ENST00000544301 TTTY13Q9BZ97 58 aa13.4□□□□□ -0.26
VIM-209ENST00000544301 C9orf85Q96MD7 179 aa13.39□□□□□ -0.27
VIM-209ENST00000544301 H7C1H1 209 aa13.39□□□□□ -0.27
VIM-209ENST00000544301 PLNP26678 52 aa13.39□□□□□ -0.27
VIM-209ENST00000544301 CDKN1BP46527 198 aa13.39□□□□□ -0.27
VIM-209ENST00000544301 A0A087WWL8 130 aa13.38□□□□□ -0.27
VIM-209ENST00000544301 SPINK13Q1W4C9 94 aa13.38□□□□□ -0.27
VIM-209ENST00000544301 TCTEX1D4Q5JR98 221 aa13.38□□□□□ -0.27
VIM-209ENST00000544301 SUMO4Q6EEV6 95 aa13.38□□□□□ -0.27
VIM-209ENST00000544301 C2orf66Q6UXQ4 117 aa13.38□□□□□ -0.27
VIM-209ENST00000544301 C18orf65Q6ZTR6 163 aa13.38□□□□□ -0.27
VIM-209ENST00000544301 Q8N2B8 174 aa13.38□□□□□ -0.27
VIM-209ENST00000544301 MDFICQ9P1T7 246 aa13.38□□□□□ -0.27
VIM-209ENST00000544301 A6NDN8 102 aa13.37□□□□□ -0.27
VIM-209ENST00000544301 DUSP14O95147 198 aaKnown RBP13.37□□□□□ -0.27
VIM-209ENST00000544301 HLA-DRB4P13762 266 aa13.37□□□□□ -0.27
VIM-209ENST00000544301 RPL32P62910 135 aaKnown RBP13.37□□□□□ -0.27
VIM-209ENST00000544301 NEGR1Q7Z3B1 354 aa13.37□□□□□ -0.27
VIM-209ENST00000544301 HIGD1BQ9P298 99 aa13.37□□□□□ -0.27
VIM-209ENST00000544301 HLA-DRB4X5D2U9 266 aa13.37□□□□□ -0.27
VIM-209ENST00000544301 F8VRH5 84 aa13.37□□□□□ -0.27
VIM-209ENST00000544301 SLURP1P55000 103 aa13.37□□□□□ -0.27
VIM-209ENST00000544301 AMMECR1LQ6DCA0 310 aa13.37□□□□□ -0.27
VIM-209ENST00000544301 FOXI2Q6ZQN5 318 aa13.37□□□□□ -0.27
VIM-209ENST00000544301 NEXN-AS1Q8NBZ9 246 aa13.37□□□□□ -0.27
VIM-209ENST00000544301 IGHV1OR15-1A0A075B7D0 117 aa13.36□□□□□ -0.27
VIM-209ENST00000544301 DEFB136Q30KP8 78 aa13.36□□□□□ -0.27
VIM-209ENST00000544301 KRTAP1-3Q8IUG1 177 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms