RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 SGK494Q96LW2 274 aa11.61□□□□□ -0.55
CLSTN3-214ENST00000542663 COX11Q9Y6N1 276 aa11.61□□□□□ -0.55
CLSTN3-214ENST00000542663 FAM240BA0A1B0GVZ2 78 aa11.6□□□□□ -0.55
CLSTN3-214ENST00000542663 GAGE12JA6NER3 117 aa11.6□□□□□ -0.55
CLSTN3-214ENST00000542663 RNASE3P12724 160 aaKnown RBP11.6□□□□□ -0.55
CLSTN3-214ENST00000542663 GAGE1Q13065 139 aa11.6□□□□□ -0.55
CLSTN3-214ENST00000542663 GAGE4Q13068 117 aa11.6□□□□□ -0.55
CLSTN3-214ENST00000542663 GAGE5Q13069 117 aa11.6□□□□□ -0.55
CLSTN3-214ENST00000542663 LRRC37A5PQ49AS3 106 aa11.6□□□□□ -0.55
CLSTN3-214ENST00000542663 GAGE13Q4V321 117 aa11.6□□□□□ -0.55
CLSTN3-214ENST00000542663 FAM74A1Q5RGS3 127 aa11.6□□□□□ -0.55
CLSTN3-214ENST00000542663 MZT2BQ6NZ67 158 aa11.6□□□□□ -0.55
CLSTN3-214ENST00000542663 UPK1BO75841 260 aa11.59□□□□□ -0.55
CLSTN3-214ENST00000542663 PARLQ9H300 379 aa11.59□□□□□ -0.55
CLSTN3-214ENST00000542663 ACOT6Q3I5F7 207 aaPredicted RBP11.58□□□□□ -0.56
CLSTN3-214ENST00000542663 CYB561D1Q8N8Q1 229 aa11.58□□□□□ -0.56
CLSTN3-214ENST00000542663 DAZAP1Q96EP5 407 aaKnown RBP11.58□□□□□ -0.56
CLSTN3-214ENST00000542663 SAMD10Q9BYL1 202 aa11.58□□□□□ -0.56
CLSTN3-214ENST00000542663 BATF3Q9NR55 127 aa11.58□□□□□ -0.56
CLSTN3-214ENST00000542663 IGKV2D-24A0A075B6R9 120 aa11.57□□□□□ -0.56
CLSTN3-214ENST00000542663 TAAR5O14804 337 aa11.57□□□□□ -0.56
CLSTN3-214ENST00000542663 ZFP2Q6ZN57 461 aa11.57□□□□□ -0.56
CLSTN3-214ENST00000542663 RMI2Q96E14 147 aa11.57□□□□□ -0.56
CLSTN3-214ENST00000542663 LINC00479Q96M42 142 aa11.57□□□□□ -0.56
CLSTN3-214ENST00000542663 SH3BGRL3Q9H299 93 aa11.57□□□□□ -0.56
CLSTN3-214ENST00000542663 A0A087WWC5 75 aa11.56□□□□□ -0.56
CLSTN3-214ENST00000542663 GCGP01275 180 aa11.56□□□□□ -0.56
CLSTN3-214ENST00000542663 IGLV2-11P01706 119 aa11.56□□□□□ -0.56
CLSTN3-214ENST00000542663 UFSP1Q6NVU6 142 aa11.56□□□□□ -0.56
CLSTN3-214ENST00000542663 PQLC2Q6ZP29 291 aa11.56□□□□□ -0.56
CLSTN3-214ENST00000542663 NIT1Q86X76 327 aa11.56□□□□□ -0.56
CLSTN3-214ENST00000542663 C14orf178Q8N769 122 aaPredicted RBP11.56□□□□□ -0.56
CLSTN3-214ENST00000542663 OR2T35Q8NGX2 323 aa11.56□□□□□ -0.56
CLSTN3-214ENST00000542663 ENKURQ8TC29 256 aa11.56□□□□□ -0.56
CLSTN3-214ENST00000542663 MT1HL1P0DM35 61 aa11.55□□□□□ -0.56
CLSTN3-214ENST00000542663 RPL37AP61513 92 aaKnown RBP11.55□□□□□ -0.56
CLSTN3-214ENST00000542663 IFITM3Q01628 133 aa11.55□□□□□ -0.56
CLSTN3-214ENST00000542663 NDFIP1Q9BT67 221 aa11.55□□□□□ -0.56
CLSTN3-214ENST00000542663 JPT2Q9H910 190 aa11.55□□□□□ -0.56
CLSTN3-214ENST00000542663 KLK12Q9UKR0 248 aa11.55□□□□□ -0.56
CLSTN3-214ENST00000542663 HSPB11Q9Y547 144 aa11.55□□□□□ -0.56
CLSTN3-214ENST00000542663 A8MWV9 139 aa11.54□□□□□ -0.56
CLSTN3-214ENST00000542663 ATRAIDQ6UW56 229 aa11.54□□□□□ -0.56
CLSTN3-214ENST00000542663 HMGB3O15347 200 aaKnown RBP11.53□□□□□ -0.56
CLSTN3-214ENST00000542663 TCRAP04437 139 aa11.53□□□□□ -0.56
CLSTN3-214ENST00000542663 RAB2AP61019 212 aa11.53□□□□□ -0.56
CLSTN3-214ENST00000542663 UBE2WQ96B02 151 aa11.53□□□□□ -0.56
CLSTN3-214ENST00000542663 SMIM3Q9BZL3 60 aa11.53□□□□□ -0.56
CLSTN3-214ENST00000542663 PSG8Q9UQ74 426 aa11.53□□□□□ -0.56
CLSTN3-214ENST00000542663 URGCP-MRPS24S4R325 110 aa11.53□□□□□ -0.56
CLSTN3-214ENST00000542663 SERTM2A0A1B0GWG4 89 aa11.52□□□□□ -0.57
CLSTN3-214ENST00000542663 PIK3CD-AS1Q5SR53 167 aa11.52□□□□□ -0.57
CLSTN3-214ENST00000542663 SCGB1C1Q8TD33 95 aa11.52□□□□□ -0.57
CLSTN3-214ENST00000542663 IGKV3D-20A0A0C4DH25 116 aa11.51□□□□□ -0.57
CLSTN3-214ENST00000542663 A0A1W2PPV4 95 aa11.51□□□□□ -0.57
CLSTN3-214ENST00000542663 FGF8P55075 233 aaPredicted RBP11.51□□□□□ -0.57
CLSTN3-214ENST00000542663 H2BFSP57053 126 aa11.51□□□□□ -0.57
CLSTN3-214ENST00000542663 LGALSLQ3ZCW2 172 aaPredicted RBP11.51□□□□□ -0.57
CLSTN3-214ENST00000542663 SMUG1Q53HV7 270 aa11.51□□□□□ -0.57
CLSTN3-214ENST00000542663 C5orf17Q8NAS9 161 aa11.51□□□□□ -0.57
CLSTN3-214ENST00000542663 PPP1R1CQ8WVI7 109 aa11.51□□□□□ -0.57
CLSTN3-214ENST00000542663 WFDC1Q9HC57 220 aa11.51□□□□□ -0.57
CLSTN3-214ENST00000542663 ARL14EPLP0DKL9 152 aa11.5□□□□□ -0.57
CLSTN3-214ENST00000542663 FLI1Q01543 452 aaPredicted RBP11.5□□□□□ -0.57
CLSTN3-214ENST00000542663 SEC11BP0C7V7 166 aa11.49□□□□□ -0.57
CLSTN3-214ENST00000542663 DEFA1P59665 94 aa11.49□□□□□ -0.57
CLSTN3-214ENST00000542663 DEFA3P59666 94 aa11.49□□□□□ -0.57
CLSTN3-214ENST00000542663 CYCSP99999 105 aaKnown RBP11.49□□□□□ -0.57
CLSTN3-214ENST00000542663 ZFP69Q49AA0 526 aa11.49□□□□□ -0.57
CLSTN3-214ENST00000542663 PRNTQ86SH4 94 aa11.49□□□□□ -0.57
CLSTN3-214ENST00000542663 TNXBP22105 4242 aa11.49□□□□□ -0.57
CLSTN3-214ENST00000542663 LRP2P98164 4655 aa11.48□□□□□ -0.57
CLSTN3-214ENST00000542663 INMT-MINDY4F8WBC2 141 aa11.48□□□□□ -0.57
CLSTN3-214ENST00000542663 MPC2O95563 127 aa11.48□□□□□ -0.57
CLSTN3-214ENST00000542663 RPL12P30050 165 aaKnown RBP11.48□□□□□ -0.57
CLSTN3-214ENST00000542663 OR10G9Q8NGN4 311 aa11.48□□□□□ -0.57
CLSTN3-214ENST00000542663 SUN5Q8TC36 379 aa11.48□□□□□ -0.57
CLSTN3-214ENST00000542663 CHCHD7Q9BUK0 85 aa11.48□□□□□ -0.57
CLSTN3-214ENST00000542663 A0A087WX48 190 aa11.47□□□□□ -0.57
CLSTN3-214ENST00000542663 K7EQM0 130 aa11.47□□□□□ -0.57
CLSTN3-214ENST00000542663 STAG3L2P0CL84 134 aa11.47□□□□□ -0.57
CLSTN3-214ENST00000542663 STAG3L3P0CL85 134 aa11.47□□□□□ -0.57
CLSTN3-214ENST00000542663 S100A4P26447 101 aaKnown RBP11.47□□□□□ -0.57
CLSTN3-214ENST00000542663 C14orf177Q52M58 125 aa11.47□□□□□ -0.57
CLSTN3-214ENST00000542663 DMRTA1Q5VZB9 504 aa11.47□□□□□ -0.57
CLSTN3-214ENST00000542663 ENHOQ6UWT2 76 aa11.47□□□□□ -0.57
CLSTN3-214ENST00000542663 OR10G7Q8NGN6 311 aa11.47□□□□□ -0.57
CLSTN3-214ENST00000542663 IL36BQ9NZH7 164 aa11.47□□□□□ -0.57
CLSTN3-214ENST00000542663 Q0VG73 95 aa11.46□□□□□ -0.57
CLSTN3-214ENST00000542663 ELOBQ15370 118 aa11.46□□□□□ -0.57
CLSTN3-214ENST00000542663 EPDR1Q9UM22 224 aa11.46□□□□□ -0.57
CLSTN3-214ENST00000542663 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.46□□□□□ -0.57
CLSTN3-214ENST00000542663 H3BVH4 76 aa11.45□□□□□ -0.58
CLSTN3-214ENST00000542663 PANO1I0J062 215 aa11.45□□□□□ -0.58
CLSTN3-214ENST00000542663 GCHFRP30047 84 aa11.45□□□□□ -0.58
CLSTN3-214ENST00000542663 ASIPP42127 132 aa11.45□□□□□ -0.58
CLSTN3-214ENST00000542663 CDC34P49427 236 aaPredicted RBP11.45□□□□□ -0.58
CLSTN3-214ENST00000542663 SUMO1P63165 101 aaKnown RBP11.45□□□□□ -0.58
CLSTN3-214ENST00000542663 FAM74A4Q5TZK3 123 aa11.45□□□□□ -0.58
CLSTN3-214ENST00000542663 OR2G3Q8NGZ4 309 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms