RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 GAGE12FP0CL80 117 aa12.17□□□□□ -0.46
LIG1-204ENST00000542460 GAGE12GP0CL81 117 aa12.17□□□□□ -0.46
LIG1-204ENST00000542460 GAGE12IP0CL82 117 aa12.17□□□□□ -0.46
LIG1-204ENST00000542460 RASL10AQ92737 203 aa12.17□□□□□ -0.46
LIG1-204ENST00000542460 MRPL16Q9NX20 251 aaKnown RBP12.17□□□□□ -0.46
LIG1-204ENST00000542460 MED14OSP0DP75 135 aa12.16□□□□□ -0.46
LIG1-204ENST00000542460 PNRC1Q12796 327 aaPredicted RBP12.16□□□□□ -0.46
LIG1-204ENST00000542460 Q6ZTC4 211 aa12.16□□□□□ -0.46
LIG1-204ENST00000542460 C15orf54Q8N8G6 183 aa12.16□□□□□ -0.46
LIG1-204ENST00000542460 PTH2Q96A98 100 aa12.16□□□□□ -0.46
LIG1-204ENST00000542460 SFRP2Q96HF1 295 aa12.16□□□□□ -0.46
LIG1-204ENST00000542460 SEC11CQ9BY50 192 aa12.16□□□□□ -0.46
LIG1-204ENST00000542460 SCRT2Q9NQ03 307 aa12.16□□□□□ -0.46
LIG1-204ENST00000542460 ADCYAP1P18509 176 aa12.16□□□□□ -0.46
LIG1-204ENST00000542460 ZNF876PQ49A33 203 aa12.16□□□□□ -0.46
LIG1-204ENST00000542460 CT83Q5H943 113 aa12.16□□□□□ -0.46
LIG1-204ENST00000542460 C18orf15Q96N68 181 aa12.16□□□□□ -0.46
LIG1-204ENST00000542460 SSBP4Q9BWG4 385 aaPredicted RBP12.16□□□□□ -0.46
LIG1-204ENST00000542460 PHLDA3Q9Y5J5 127 aa12.16□□□□□ -0.46
LIG1-204ENST00000542460 TRGV2A0A075B6R0 118 aa12.15□□□□□ -0.46
LIG1-204ENST00000542460 GZMBP10144 247 aa12.15□□□□□ -0.46
LIG1-204ENST00000542460 MUC7Q8TAX7 377 aa12.15□□□□□ -0.46
LIG1-204ENST00000542460 NDUFAF3Q9BU61 184 aa12.15□□□□□ -0.46
LIG1-204ENST00000542460 A8MWL6 223 aa12.14□□□□□ -0.47
LIG1-204ENST00000542460 SNAI2O43623 268 aa12.14□□□□□ -0.47
LIG1-204ENST00000542460 OR5AL1P0C617 328 aa12.14□□□□□ -0.47
LIG1-204ENST00000542460 IGLC6P0CF74 106 aa12.14□□□□□ -0.47
LIG1-204ENST00000542460 OR10G8Q8NGN5 311 aa12.14□□□□□ -0.47
LIG1-204ENST00000542460 A0A1W2PPQ1 181 aa12.13□□□□□ -0.47
LIG1-204ENST00000542460 ATP5G1P05496 136 aa12.13□□□□□ -0.47
LIG1-204ENST00000542460 PIK3CD-AS1Q5SR53 167 aa12.13□□□□□ -0.47
LIG1-204ENST00000542460 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.13□□□□□ -0.47
LIG1-204ENST00000542460 FER1L6-AS1Q8NA97 138 aa12.13□□□□□ -0.47
LIG1-204ENST00000542460 SYT8Q8NBV8 401 aa12.13□□□□□ -0.47
LIG1-204ENST00000542460 TRAV10A0A0B4J240 114 aa12.12□□□□□ -0.47
LIG1-204ENST00000542460 F2Z2F3 143 aa12.12□□□□□ -0.47
LIG1-204ENST00000542460 C10orf91Q5T1B1 145 aa12.12□□□□□ -0.47
LIG1-204ENST00000542460 PHLDA1Q8WV24 401 aaPredicted RBP12.12□□□□□ -0.47
LIG1-204ENST00000542460 TPPP3Q9BW30 176 aa12.12□□□□□ -0.47
LIG1-204ENST00000542460 V9GYV3 84 aa12.12□□□□□ -0.47
LIG1-204ENST00000542460 DMRTA1Q5VZB9 504 aa12.11□□□□□ -0.47
LIG1-204ENST00000542460 ZFP82Q8N141 532 aa12.11□□□□□ -0.47
LIG1-204ENST00000542460 SVBPQ8N300 66 aa12.11□□□□□ -0.47
LIG1-204ENST00000542460 TSKUQ8WUA8 353 aa12.11□□□□□ -0.47
LIG1-204ENST00000542460 TMA7Q9Y2S6 64 aaKnown RBP12.11□□□□□ -0.47
LIG1-204ENST00000542460 DNAH7Q8WXX0 4024 aa12.11□□□□□ -0.47
LIG1-204ENST00000542460 DEFB131BA0A096LNP1 70 aa12.11□□□□□ -0.47
LIG1-204ENST00000542460 FAM231BA6NCW3 169 aa12.11□□□□□ -0.47
LIG1-204ENST00000542460 M0R381 172 aa12.11□□□□□ -0.47
LIG1-204ENST00000542460 OR10AG1Q8NH19 301 aa12.11□□□□□ -0.47
LIG1-204ENST00000542460 GTSF1Q8WW33 167 aa12.11□□□□□ -0.47
LIG1-204ENST00000542460 GFRA4Q9GZZ7 299 aa12.11□□□□□ -0.47
LIG1-204ENST00000542460 CARHSP1Q9Y2V2 147 aaKnown RBP12.11□□□□□ -0.47
LIG1-204ENST00000542460 RYR3Q15413 4870 aa12.1□□□□□ -0.47
LIG1-204ENST00000542460 PPP1R2P9O14990 202 aa12.1□□□□□ -0.47
LIG1-204ENST00000542460 HTN3P15516 51 aa12.1□□□□□ -0.47
LIG1-204ENST00000542460 FOXA3P55318 350 aaPredicted RBP12.1□□□□□ -0.47
LIG1-204ENST00000542460 SPANXN1Q5VSR9 72 aa12.1□□□□□ -0.47
LIG1-204ENST00000542460 LYZL1Q6UWQ5 148 aa12.1□□□□□ -0.47
LIG1-204ENST00000542460 OR4C5Q8NGB2 326 aa12.1□□□□□ -0.47
LIG1-204ENST00000542460 TRAV4A0A0B4J268 109 aa12.09□□□□□ -0.47
LIG1-204ENST00000542460 A8MWV9 139 aa12.09□□□□□ -0.47
LIG1-204ENST00000542460 NXPH4O95158 308 aa12.09□□□□□ -0.47
LIG1-204ENST00000542460 MT-ND4LP03901 98 aa12.09□□□□□ -0.47
LIG1-204ENST00000542460 CEMP1Q6PRD7 247 aaPredicted RBP12.09□□□□□ -0.47
LIG1-204ENST00000542460 POM121L12Q8N7R1 296 aa12.09□□□□□ -0.47
LIG1-204ENST00000542460 MUC21A0A0G2JKD1 596 aa12.08□□□□□ -0.48
LIG1-204ENST00000542460 MUC21A0A140T8X8 626 aa12.08□□□□□ -0.48
LIG1-204ENST00000542460 NUPR2A6NF83 97 aa12.08□□□□□ -0.48
LIG1-204ENST00000542460 F5H768 121 aa12.08□□□□□ -0.48
LIG1-204ENST00000542460 C3orf84H3BNL1 204 aa12.08□□□□□ -0.48
LIG1-204ENST00000542460 RS1O15537 224 aa12.08□□□□□ -0.48
LIG1-204ENST00000542460 CTRLP40313 264 aa12.08□□□□□ -0.48
LIG1-204ENST00000542460 CACNG7P62955 275 aa12.08□□□□□ -0.48
LIG1-204ENST00000542460 RNF212Q495C1 297 aa12.08□□□□□ -0.48
LIG1-204ENST00000542460 CFAP126Q5VTH2 177 aa12.08□□□□□ -0.48
LIG1-204ENST00000542460 WDR73Q6P4I2 378 aa12.08□□□□□ -0.48
LIG1-204ENST00000542460 ATRAIDQ6UW56 229 aa12.08□□□□□ -0.48
LIG1-204ENST00000542460 ANAPC16Q96DE5 110 aa12.08□□□□□ -0.48
LIG1-204ENST00000542460 CIDEAO60543 219 aa12.07□□□□□ -0.48
LIG1-204ENST00000542460 IGHV3-53P01767 116 aa12.07□□□□□ -0.48
LIG1-204ENST00000542460 SSTP61278 116 aa12.07□□□□□ -0.48
LIG1-204ENST00000542460 ZFAND6Q6FIF0 208 aa12.07□□□□□ -0.48
LIG1-204ENST00000542460 ZNF479Q96JC4 524 aa12.07□□□□□ -0.48
LIG1-204ENST00000542460 MUC4Q99102 2169 aa12.07□□□□□ -0.48
LIG1-204ENST00000542460 IGHV4-4A0A075B6R2 117 aa12.06□□□□□ -0.48
LIG1-204ENST00000542460 HIGD1CA8MV81 97 aa12.06□□□□□ -0.48
LIG1-204ENST00000542460 SNAPINO95295 136 aa12.06□□□□□ -0.48
LIG1-204ENST00000542460 CNFNQ9BYD5 112 aa12.06□□□□□ -0.48
LIG1-204ENST00000542460 KLK5Q9Y337 293 aaPredicted RBP12.06□□□□□ -0.48
LIG1-204ENST00000542460 SMIM27A0A1W2PRY6 76 aa12.06□□□□□ -0.48
LIG1-204ENST00000542460 HOXA5P20719 270 aa12.06□□□□□ -0.48
LIG1-204ENST00000542460 PGLYRP4Q96LB8 373 aa12.06□□□□□ -0.48
LIG1-204ENST00000542460 JPT2Q9H910 190 aa12.06□□□□□ -0.48
LIG1-204ENST00000542460 NAT8BQ9UHF3 227 aa12.06□□□□□ -0.48
LIG1-204ENST00000542460 NTF3P20783 257 aa12.05□□□□□ -0.48
LIG1-204ENST00000542460 SLAQ13239 276 aa12.05□□□□□ -0.48
LIG1-204ENST00000542460 FHL2Q14192 279 aa12.05□□□□□ -0.48
LIG1-204ENST00000542460 ZFP2Q6ZN57 461 aa12.05□□□□□ -0.48
LIG1-204ENST00000542460 BORCS7Q96B45 105 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms