RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 COX6B1P14854 86 aa9.49□□□□□ -0.89
RNF4-222ENST00000541204 KRTAP10-9P60411 292 aa9.49□□□□□ -0.89
RNF4-222ENST00000541204 SRSF1Q07955 248 aaKnown RBP eCLIP9.49□□□□□ -0.894e-6■□□□□ 8.1
RNF4-222ENST00000541204 FAM223AQ8IWN6 122 aa9.49□□□□□ -0.89
RNF4-222ENST00000541204 A0A087WX48 190 aa9.49□□□□□ -0.89
RNF4-222ENST00000541204 PHLDA1Q8WV24 401 aaPredicted RBP9.49□□□□□ -0.89
RNF4-222ENST00000541204 MRPL53Q96EL3 112 aaKnown RBP9.49□□□□□ -0.89
RNF4-222ENST00000541204 C20orf173Q96LM9 149 aa9.49□□□□□ -0.89
RNF4-222ENST00000541204 IGHG2P01859 326 aa9.48□□□□□ -0.89
RNF4-222ENST00000541204 DEFB112Q30KQ8 113 aa9.48□□□□□ -0.89
RNF4-222ENST00000541204 U3KQE9 123 aa9.48□□□□□ -0.89
RNF4-222ENST00000541204 IGHV4-4A0A075B6R2 117 aa9.48□□□□□ -0.89
RNF4-222ENST00000541204 RNF223E7ERA6 249 aa9.48□□□□□ -0.89
RNF4-222ENST00000541204 C10orf99Q6UWK7 81 aa9.48□□□□□ -0.89
RNF4-222ENST00000541204 ZNF843Q8N446 348 aa9.48□□□□□ -0.89
RNF4-222ENST00000541204 TM2D2Q9BX73 214 aa9.48□□□□□ -0.89
RNF4-222ENST00000541204 TLN2Q9Y4G6 2542 aa9.48□□□□□ -0.89
RNF4-222ENST00000541204 M0R381 172 aa9.47□□□□□ -0.89
RNF4-222ENST00000541204 SRD5A1P18405 259 aa9.47□□□□□ -0.89
RNF4-222ENST00000541204 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.47□□□□□ -0.89
RNF4-222ENST00000541204 TEX15Q9BXT5 2789 aa9.47□□□□□ -0.89
RNF4-222ENST00000541204 HLA-DRB4P13762 266 aa9.46□□□□□ -0.89
RNF4-222ENST00000541204 EDN2P20800 178 aa9.46□□□□□ -0.89
RNF4-222ENST00000541204 SMIM2Q9BVW6 85 aa9.46□□□□□ -0.89
RNF4-222ENST00000541204 HLA-DRB4X5D2U9 266 aa9.46□□□□□ -0.89
RNF4-222ENST00000541204 GLMPQ8WWB7 406 aa9.46□□□□□ -0.9
RNF4-222ENST00000541204 CREBBPQ92793 2442 aa9.46□□□□□ -0.9
RNF4-222ENST00000541204 PLNP26678 52 aa9.46□□□□□ -0.9
RNF4-222ENST00000541204 RPL24P83731 157 aaKnown RBP9.46□□□□□ -0.9
RNF4-222ENST00000541204 LINC01356Q8N9X3 169 aa9.46□□□□□ -0.9
RNF4-222ENST00000541204 MRAP2Q96G30 205 aa9.46□□□□□ -0.9
RNF4-222ENST00000541204 AGRNO00468 2067 aa9.45□□□□□ -0.9
RNF4-222ENST00000541204 CRIP2P52943 208 aaPredicted RBP9.45□□□□□ -0.9
RNF4-222ENST00000541204 C9orf139Q6ZV77 190 aa9.45□□□□□ -0.9
RNF4-222ENST00000541204 RPL39LQ96EH5 51 aaKnown RBP9.45□□□□□ -0.9
RNF4-222ENST00000541204 S100A4P26447 101 aaKnown RBP9.45□□□□□ -0.9
RNF4-222ENST00000541204 GPHB5Q86YW7 130 aa9.45□□□□□ -0.9
RNF4-222ENST00000541204 C14orf178Q8N769 122 aaPredicted RBP9.45□□□□□ -0.9
RNF4-222ENST00000541204 RASL10AQ92737 203 aa9.45□□□□□ -0.9
RNF4-222ENST00000541204 HIST1H4GQ99525 98 aa9.45□□□□□ -0.9
RNF4-222ENST00000541204 F8VRH5 84 aa9.44□□□□□ -0.9
RNF4-222ENST00000541204 H7C1H1 209 aa9.44□□□□□ -0.9
RNF4-222ENST00000541204 SUMO2P61956 95 aaKnown RBP9.44□□□□□ -0.9
RNF4-222ENST00000541204 ZFAND2AQ8N6M9 145 aa9.44□□□□□ -0.9
RNF4-222ENST00000541204 SCGB3A1Q96QR1 104 aa9.44□□□□□ -0.9
RNF4-222ENST00000541204 TEX48A0A1B0GUV7 120 aa9.44□□□□□ -0.9
RNF4-222ENST00000541204 IGLL5B9A064 214 aa9.44□□□□□ -0.9
RNF4-222ENST00000541204 F6UB75 175 aa9.44□□□□□ -0.9
RNF4-222ENST00000541204 SLC25A16P16260 332 aa9.44□□□□□ -0.9
RNF4-222ENST00000541204 DSCR9P59020 149 aa9.44□□□□□ -0.9
RNF4-222ENST00000541204 DUX5Q96PT3 197 aa9.44□□□□□ -0.9
RNF4-222ENST00000541204 CHTOPQ9Y3Y2 248 aaKnown RBP9.44□□□□□ -0.9
RNF4-222ENST00000541204 E9PLD3 99 aa9.43□□□□□ -0.9
RNF4-222ENST00000541204 NDUFA4O00483 81 aa9.43□□□□□ -0.9
RNF4-222ENST00000541204 C12orf74Q32Q52 190 aa9.43□□□□□ -0.9
RNF4-222ENST00000541204 OR10J6PQ8NGY7 276 aa9.43□□□□□ -0.9
RNF4-222ENST00000541204 USMG5Q96IX5 58 aa9.43□□□□□ -0.9
RNF4-222ENST00000541204 TRAV12-1A0A0B4J245 112 aa9.43□□□□□ -0.9
RNF4-222ENST00000541204 MGPP08493 103 aa9.43□□□□□ -0.9
RNF4-222ENST00000541204 ORMDL2Q53FV1 153 aa9.43□□□□□ -0.9
RNF4-222ENST00000541204 TOMM6Q96B49 74 aa9.43□□□□□ -0.9
RNF4-222ENST00000541204 LINC00477Q96M19 166 aa9.43□□□□□ -0.9
RNF4-222ENST00000541204 PHLDA3Q9Y5J5 127 aa9.43□□□□□ -0.9
RNF4-222ENST00000541204 LENEPQ9Y5L5 61 aa9.43□□□□□ -0.9
RNF4-222ENST00000541204 CCDC168Q8NDH2 2452 aa9.43□□□□□ -0.9
RNF4-222ENST00000541204 TRAV21A0A0B4J279 112 aa9.42□□□□□ -0.9
RNF4-222ENST00000541204 ANXA2RQ3ZCQ2 193 aa9.42□□□□□ -0.9
RNF4-222ENST00000541204 ZNF479Q96JC4 524 aa9.42□□□□□ -0.9
RNF4-222ENST00000541204 RHPN1-AS1Q9BWJ2 59 aa9.42□□□□□ -0.9
RNF4-222ENST00000541204 DPH3P1Q9H4G8 78 aa9.42□□□□□ -0.9
RNF4-222ENST00000541204 RNASE4P34096 147 aaKnown RBP9.42□□□□□ -0.9
RNF4-222ENST00000541204 ASIPP42127 132 aa9.42□□□□□ -0.9
RNF4-222ENST00000541204 TAL2Q16559 108 aa9.42□□□□□ -0.9
RNF4-222ENST00000541204 NEXN-AS1Q8NBZ9 246 aa9.42□□□□□ -0.9
RNF4-222ENST00000541204 WFDC12Q8WWY7 111 aa9.42□□□□□ -0.9
RNF4-222ENST00000541204 APCP25054 2843 aa9.41□□□□□ -0.9
RNF4-222ENST00000541204 A0A096LNT2 108 aa9.41□□□□□ -0.9
RNF4-222ENST00000541204 OR11H12B2RN74 326 aa9.41□□□□□ -0.9
RNF4-222ENST00000541204 GNRH2O43555 120 aa9.41□□□□□ -0.9
RNF4-222ENST00000541204 IGLV1-40P01703 118 aa9.41□□□□□ -0.9
RNF4-222ENST00000541204 FOXI2Q6ZQN5 318 aa9.41□□□□□ -0.9
RNF4-222ENST00000541204 OR11H1Q8NG94 326 aa9.41□□□□□ -0.9
RNF4-222ENST00000541204 OR11H2Q8NH07 326 aa9.41□□□□□ -0.9
RNF4-222ENST00000541204 SONP18583 2426 aaKnown RBP9.41□□□□□ -0.9
RNF4-222ENST00000541204 MYO9AB2RTY4 2548 aa9.41□□□□□ -0.9
RNF4-222ENST00000541204 MYMXA0A1B0GTQ4 84 aa9.41□□□□□ -0.9
RNF4-222ENST00000541204 H3BMG7 143 aa9.41□□□□□ -0.9
RNF4-222ENST00000541204 SOCS3O14543 225 aa9.41□□□□□ -0.9
RNF4-222ENST00000541204 GATA3P23771 443 aa9.41□□□□□ -0.9
RNF4-222ENST00000541204 NBPF19A0A087WUL8 3843 aa9.41□□□□□ -0.9
RNF4-222ENST00000541204 TRBV7-3A0A075B6L6 115 aa9.41□□□□□ -0.9
RNF4-222ENST00000541204 WFDC2Q14508 124 aa9.41□□□□□ -0.9
RNF4-222ENST00000541204 AMTNQ6UX39 209 aa9.41□□□□□ -0.9
RNF4-222ENST00000541204 C2orf66Q6UXQ4 117 aa9.41□□□□□ -0.9
RNF4-222ENST00000541204 BAALCQ8WXS3 180 aa9.41□□□□□ -0.9
RNF4-222ENST00000541204 C20orf78Q9BR46 151 aa9.41□□□□□ -0.9
RNF4-222ENST00000541204 BEX4Q9NWD9 120 aaPredicted RBP9.41□□□□□ -0.9
RNF4-222ENST00000541204 OVOL1O14753 267 aa9.4□□□□□ -0.9
RNF4-222ENST00000541204 DEFB104AQ8WTQ1 72 aa9.4□□□□□ -0.9
RNF4-222ENST00000541204 CYSLTR1Q9Y271 337 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms