RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 PIEZO2Q9H5I5 2752 aa10.95□□□□□ -0.66
COLCA1-204ENST00000540738 MRPL51Q4U2R6 128 aaKnown RBP10.95□□□□□ -0.66
COLCA1-204ENST00000540738 Q6ZWC4 215 aa10.95□□□□□ -0.66
COLCA1-204ENST00000540738 FANCD2OSQ96PS1 177 aa10.95□□□□□ -0.66
COLCA1-204ENST00000540738 OVOL2Q9BRP0 275 aa10.95□□□□□ -0.66
COLCA1-204ENST00000540738 ERG28Q9UKR5 140 aa10.95□□□□□ -0.66
COLCA1-204ENST00000540738 K7EQD1 137 aa10.95□□□□□ -0.66
COLCA1-204ENST00000540738 HERVK_113P63121 156 aa10.95□□□□□ -0.66
COLCA1-204ENST00000540738 IL15RAQ13261 267 aa10.95□□□□□ -0.66
COLCA1-204ENST00000540738 ADAMTSL5Q6ZMM2 481 aa10.95□□□□□ -0.66
COLCA1-204ENST00000540738 CTAG1AP78358 180 aa10.95□□□□□ -0.66
COLCA1-204ENST00000540738 GATD1Q8NB37 220 aa10.95□□□□□ -0.66
COLCA1-204ENST00000540738 CHD8Q9HCK8 2581 aa10.95□□□□□ -0.66
COLCA1-204ENST00000540738 C11orf45Q8TAV5 145 aa10.95□□□□□ -0.66
COLCA1-204ENST00000540738 NHP2Q9NX24 153 aaKnown RBP10.95□□□□□ -0.66
COLCA1-204ENST00000540738 C5orf30Q96GV9 206 aa10.94□□□□□ -0.66
COLCA1-204ENST00000540738 DEFB125Q8N687 156 aa10.94□□□□□ -0.66
COLCA1-204ENST00000540738 NUP210LQ5VU65 1888 aa10.94□□□□□ -0.66
COLCA1-204ENST00000540738 PRSS29PA6NIE9 313 aa10.94□□□□□ -0.66
COLCA1-204ENST00000540738 VWC2LB2RUY7 222 aa10.94□□□□□ -0.66
COLCA1-204ENST00000540738 NEGR1Q7Z3B1 354 aa10.94□□□□□ -0.66
COLCA1-204ENST00000540738 PSMG3-AS1Q96PY0 264 aa10.94□□□□□ -0.66
COLCA1-204ENST00000540738 MAP6D1Q9H9H5 199 aa10.93□□□□□ -0.66
COLCA1-204ENST00000540738 TNRC6AQ8NDV7 1962 aaKnown RBP10.93□□□□□ -0.66
COLCA1-204ENST00000540738 CHD3Q12873 2000 aaKnown RBP10.93□□□□□ -0.66
COLCA1-204ENST00000540738 DAZ2Q13117 558 aaKnown RBP10.93□□□□□ -0.66
COLCA1-204ENST00000540738 ZC2HC1BQ5TFG8 222 aa10.93□□□□□ -0.66
COLCA1-204ENST00000540738 DAZ4Q86SG3 579 aaKnown RBP10.93□□□□□ -0.66
COLCA1-204ENST00000540738 DAZ3Q9NR90 486 aaKnown RBP10.93□□□□□ -0.66
COLCA1-204ENST00000540738 A0A087X0K7 114 aa10.93□□□□□ -0.66
COLCA1-204ENST00000540738 HSD52Q0P140 79 aa10.93□□□□□ -0.66
COLCA1-204ENST00000540738 C9orf47Q6ZRZ4 202 aa10.93□□□□□ -0.66
COLCA1-204ENST00000540738 SMIM9A6NGZ8 99 aa10.92□□□□□ -0.66
COLCA1-204ENST00000540738 K7EMI3 77 aa10.92□□□□□ -0.66
COLCA1-204ENST00000540738 TYMSP04818 313 aa10.92□□□□□ -0.66
COLCA1-204ENST00000540738 IGLL5B9A064 214 aa10.92□□□□□ -0.66
COLCA1-204ENST00000540738 EGR2P11161 476 aaPredicted RBP10.92□□□□□ -0.66
COLCA1-204ENST00000540738 UNQ9165/PRO28630Q6UXU0 137 aa10.92□□□□□ -0.66
COLCA1-204ENST00000540738 Q6ZQT7 251 aa10.92□□□□□ -0.66
COLCA1-204ENST00000540738 LINC01006Q8NI28 216 aa10.92□□□□□ -0.66
COLCA1-204ENST00000540738 TRAV26-2A0A0B4J265 109 aa10.92□□□□□ -0.66
COLCA1-204ENST00000540738 TRBV12-3P01733 135 aa10.92□□□□□ -0.66
COLCA1-204ENST00000540738 HHLA3Q9XRX5 114 aa10.92□□□□□ -0.66
COLCA1-204ENST00000540738 SMIM27A0A1W2PRY6 76 aa10.92□□□□□ -0.66
COLCA1-204ENST00000540738 IGLL1P15814 213 aa10.92□□□□□ -0.66
COLCA1-204ENST00000540738 NPC2P61916 151 aa10.92□□□□□ -0.66
COLCA1-204ENST00000540738 ATXN8Q156A1 80 aa10.92□□□□□ -0.66
COLCA1-204ENST00000540738 TMEM263Q8WUH6 116 aaKnown RBP10.92□□□□□ -0.66
COLCA1-204ENST00000540738 V9GYV3 84 aa10.91□□□□□ -0.66
COLCA1-204ENST00000540738 A0A0J9YX75 114 aa10.91□□□□□ -0.66
COLCA1-204ENST00000540738 CDSNQ15517 529 aa10.91□□□□□ -0.66
COLCA1-204ENST00000540738 SYS1-DBNDD2H3BUS1 97 aa10.91□□□□□ -0.66
COLCA1-204ENST00000540738 UBE2BP63146 152 aa10.9□□□□□ -0.66
COLCA1-204ENST00000540738 PATE2Q6UY27 113 aa10.9□□□□□ -0.66
COLCA1-204ENST00000540738 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.9□□□□□ -0.66
COLCA1-204ENST00000540738 ABCA2Q9BZC7 2435 aa10.9□□□□□ -0.66
COLCA1-204ENST00000540738 DEFB114Q30KQ6 69 aa10.9□□□□□ -0.66
COLCA1-204ENST00000540738 CCDC140Q96MF4 163 aa10.9□□□□□ -0.66
COLCA1-204ENST00000540738 NCOA6Q14686 2063 aaPredicted RBP10.9□□□□□ -0.66
COLCA1-204ENST00000540738 LY6LH3BQJ8 138 aa10.9□□□□□ -0.67
COLCA1-204ENST00000540738 NDUFA7O95182 113 aa10.9□□□□□ -0.67
COLCA1-204ENST00000540738 PFN2P35080 140 aa10.9□□□□□ -0.67
COLCA1-204ENST00000540738 CLPSL2Q6UWE3 100 aa10.9□□□□□ -0.67
COLCA1-204ENST00000540738 SFTA2Q6UW10 78 aa10.89□□□□□ -0.67
COLCA1-204ENST00000540738 ORAOV1Q8WV07 137 aa10.89□□□□□ -0.67
COLCA1-204ENST00000540738 LAMTOR3Q9UHA4 124 aa10.89□□□□□ -0.67
COLCA1-204ENST00000540738 LRP4O75096 1905 aa10.89□□□□□ -0.67
COLCA1-204ENST00000540738 SPANXA1Q9NS26 97 aa10.89□□□□□ -0.67
COLCA1-204ENST00000540738 KLF12Q9Y4X4 402 aa10.89□□□□□ -0.67
COLCA1-204ENST00000540738 A0A1B0GWB2 263 aa10.89□□□□□ -0.67
COLCA1-204ENST00000540738 COLCA2A8K830 154 aa10.89□□□□□ -0.67
COLCA1-204ENST00000540738 PRO0255Q9UI72 69 aa10.89□□□□□ -0.67
COLCA1-204ENST00000540738 LINC01548A6NM66 108 aa10.89□□□□□ -0.67
COLCA1-204ENST00000540738 KRTAP10-9P60411 292 aa10.89□□□□□ -0.67
COLCA1-204ENST00000540738 ESDP10768 282 aa10.88□□□□□ -0.67
COLCA1-204ENST00000540738 Q0VG73 95 aa10.88□□□□□ -0.67
COLCA1-204ENST00000540738 PRRC2AP48634 2157 aaKnown RBP10.88□□□□□ -0.67
COLCA1-204ENST00000540738 IGLV2-14P01704 120 aa10.88□□□□□ -0.67
COLCA1-204ENST00000540738 XCL1P47992 114 aa10.88□□□□□ -0.67
COLCA1-204ENST00000540738 ZNF702PQ9H963 129 aa10.88□□□□□ -0.67
COLCA1-204ENST00000540738 MED14OSP0DP75 135 aa10.88□□□□□ -0.67
COLCA1-204ENST00000540738 Q8N1Y9 231 aa10.88□□□□□ -0.67
COLCA1-204ENST00000540738 SPCS1Q9Y6A9 102 aa10.88□□□□□ -0.67
COLCA1-204ENST00000540738 E7EUB6 86 aa10.88□□□□□ -0.67
COLCA1-204ENST00000540738 RNF183Q96D59 192 aa10.87□□□□□ -0.67
COLCA1-204ENST00000540738 ZNF625Q96I27 306 aaPredicted RBP10.87□□□□□ -0.67
COLCA1-204ENST00000540738 HIST1H2BLQ99880 126 aa10.87□□□□□ -0.67
COLCA1-204ENST00000540738 DEFB4AO15263 64 aa10.87□□□□□ -0.67
COLCA1-204ENST00000540738 IGHV3-30P01768 117 aa10.87□□□□□ -0.67
COLCA1-204ENST00000540738 IGHV3-33P01772 117 aa10.87□□□□□ -0.67
COLCA1-204ENST00000540738 IGHV3-30-3P0DP02 117 aa10.87□□□□□ -0.67
COLCA1-204ENST00000540738 IGHV3-30-5P0DP03 117 aa10.87□□□□□ -0.67
COLCA1-204ENST00000540738 NDUFAF3Q9BU61 184 aa10.87□□□□□ -0.67
COLCA1-204ENST00000540738 LYRM9A8MSI8 78 aa10.86□□□□□ -0.67
COLCA1-204ENST00000540738 C18orf32Q8TCD1 76 aa10.86□□□□□ -0.67
COLCA1-204ENST00000540738 TMEM126AQ9H061 195 aa10.86□□□□□ -0.67
COLCA1-204ENST00000540738 CEP295Q9C0D2 2601 aa10.86□□□□□ -0.67
COLCA1-204ENST00000540738 ESM1Q9NQ30 184 aa10.86□□□□□ -0.67
COLCA1-204ENST00000540738 NPYP01303 97 aa10.86□□□□□ -0.67
COLCA1-204ENST00000540738 POLR3KQ9Y2Y1 108 aaPredicted RBP10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms