RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 DCTN5Q9BTE1 182 aa7.26□□□□□ -1.25
CLIP1-214ENST00000540539 SRXN1Q9BYN0 137 aa7.26□□□□□ -1.25
CLIP1-214ENST00000540539 MRPL36Q9P0J6 103 aaKnown RBP7.26□□□□□ -1.25
CLIP1-214ENST00000540539 ATMQ13315 3056 aa7.26□□□□□ -1.25
CLIP1-214ENST00000540539 TRIAP1O43715 76 aa7.26□□□□□ -1.25
CLIP1-214ENST00000540539 SS18L1O75177 396 aaPredicted RBP7.26□□□□□ -1.25
CLIP1-214ENST00000540539 CCL3P10147 92 aa7.26□□□□□ -1.25
CLIP1-214ENST00000540539 CXCL5P42830 114 aa7.26□□□□□ -1.25
CLIP1-214ENST00000540539 LAGE3Q14657 143 aa7.26□□□□□ -1.25
CLIP1-214ENST00000540539 SLC25A29Q8N8R3 303 aa7.26□□□□□ -1.25
CLIP1-214ENST00000540539 C8orf49Q96NF6 230 aa7.26□□□□□ -1.25
CLIP1-214ENST00000540539 BOD1L1Q8NFC6 3051 aa7.26□□□□□ -1.25
CLIP1-214ENST00000540539 SPRY2O43597 315 aa7.25□□□□□ -1.25
CLIP1-214ENST00000540539 ACYP1P07311 99 aa7.25□□□□□ -1.25
CLIP1-214ENST00000540539 HOXA4Q00056 320 aaPredicted RBP7.25□□□□□ -1.25
CLIP1-214ENST00000540539 KLRB1Q12918 225 aa7.25□□□□□ -1.25
CLIP1-214ENST00000540539 CDSNQ15517 529 aa7.25□□□□□ -1.25
CLIP1-214ENST00000540539 SPINK14Q6IE38 97 aa7.25□□□□□ -1.25
CLIP1-214ENST00000540539 ZGRF1Q86YA3 2104 aa7.25□□□□□ -1.25
CLIP1-214ENST00000540539 TMEM75Q8N9X5 138 aa7.25□□□□□ -1.25
CLIP1-214ENST00000540539 GNG12Q9UBI6 72 aa7.25□□□□□ -1.25
CLIP1-214ENST00000540539 A0A0B4J2C4 111 aa7.24□□□□□ -1.25
CLIP1-214ENST00000540539 C14orf178Q8N769 122 aaPredicted RBP7.24□□□□□ -1.25
CLIP1-214ENST00000540539 ARFGEF3Q5TH69 2177 aa7.24□□□□□ -1.25
CLIP1-214ENST00000540539 TRBV7-1A0A0A6YYK4 115 aa7.24□□□□□ -1.25
CLIP1-214ENST00000540539 A0A0U1RQV1 116 aa7.24□□□□□ -1.25
CLIP1-214ENST00000540539 NBR2O15453 112 aa7.24□□□□□ -1.25
CLIP1-214ENST00000540539 LOXL3P58215 753 aa7.24□□□□□ -1.25
CLIP1-214ENST00000540539 SDIM1Q6ZPB5 146 aa7.24□□□□□ -1.25
CLIP1-214ENST00000540539 WFDC11Q8NEX6 87 aa7.24□□□□□ -1.25
CLIP1-214ENST00000540539 IL17DQ8TAD2 202 aa7.24□□□□□ -1.25
CLIP1-214ENST00000540539 FREM1Q5H8C1 2179 aa7.24□□□□□ -1.25
CLIP1-214ENST00000540539 TRBV30A0A0K0K1B3 111 aa7.23□□□□□ -1.25
CLIP1-214ENST00000540539 TMEM178BH3BS89 294 aa7.23□□□□□ -1.25
CLIP1-214ENST00000540539 SH2D1AO60880 128 aa7.23□□□□□ -1.25
CLIP1-214ENST00000540539 IGHV3-9P01782 118 aa7.23□□□□□ -1.25
CLIP1-214ENST00000540539 IGFL2Q6UWQ7 119 aa7.23□□□□□ -1.25
CLIP1-214ENST00000540539 LINC01561Q8N1V8 128 aa7.23□□□□□ -1.25
CLIP1-214ENST00000540539 SERP2Q8N6R1 65 aa7.23□□□□□ -1.25
CLIP1-214ENST00000540539 THAP8Q8NA92 274 aa7.23□□□□□ -1.25
CLIP1-214ENST00000540539 PKD1L2Q7Z442 2459 aa7.23□□□□□ -1.25
CLIP1-214ENST00000540539 PLCE1Q9P212 2302 aa7.23□□□□□ -1.25
CLIP1-214ENST00000540539 WNT9BO14905 357 aa7.23□□□□□ -1.25
CLIP1-214ENST00000540539 CCL8P80075 99 aa7.23□□□□□ -1.25
CLIP1-214ENST00000540539 KLF14Q8TD94 323 aaPredicted RBP7.23□□□□□ -1.25
CLIP1-214ENST00000540539 HES7Q9BYE0 225 aa7.23□□□□□ -1.25
CLIP1-214ENST00000540539 TLN1Q9Y490 2541 aaKnown RBP7.23□□□□□ -1.25
CLIP1-214ENST00000540539 UPK2O00526 184 aa7.22□□□□□ -1.25
CLIP1-214ENST00000540539 TSPEAR-AS2P59090 65 aa7.22□□□□□ -1.25
CLIP1-214ENST00000540539 RPL18AQ02543 176 aaKnown RBP7.22□□□□□ -1.25
CLIP1-214ENST00000540539 PRIMA1Q86XR5 153 aa7.22□□□□□ -1.25
CLIP1-214ENST00000540539 CD177Q8N6Q3 437 aa7.22□□□□□ -1.25
CLIP1-214ENST00000540539 TMEM190Q8WZ59 177 aa7.22□□□□□ -1.25
CLIP1-214ENST00000540539 KLK15Q9H2R5 256 aa7.22□□□□□ -1.25
CLIP1-214ENST00000540539 ZNF503-AS2A6NEH8 195 aa7.22□□□□□ -1.25
CLIP1-214ENST00000540539 RHOHQ15669 191 aa7.22□□□□□ -1.25
CLIP1-214ENST00000540539 ZCCHC24Q8N2G6 241 aaKnown RBP7.22□□□□□ -1.25
CLIP1-214ENST00000540539 C16orf95Q9H693 158 aa7.22□□□□□ -1.25
CLIP1-214ENST00000540539 PEMTQ9UBM1 199 aa7.22□□□□□ -1.25
CLIP1-214ENST00000540539 DNAJC13O75165 2243 aa7.22□□□□□ -1.25
CLIP1-214ENST00000540539 PLXNB1O43157 2135 aa7.22□□□□□ -1.25
CLIP1-214ENST00000540539 RNF223E7ERA6 249 aa7.21□□□□□ -1.25
CLIP1-214ENST00000540539 RUSC1-AS1Q66K80 236 aa7.21□□□□□ -1.25
CLIP1-214ENST00000540539 ITPR1Q14643 2758 aa7.21□□□□□ -1.25
CLIP1-214ENST00000540539 SPTA1P02549 2419 aa7.21□□□□□ -1.26
CLIP1-214ENST00000540539 TMEM223A0PJW6 202 aa7.21□□□□□ -1.26
CLIP1-214ENST00000540539 PINLYPA6NC86 204 aa7.21□□□□□ -1.26
CLIP1-214ENST00000540539 EPM2AB3EWF7 344 aa7.21□□□□□ -1.26
CLIP1-214ENST00000540539 IGFL3Q6UXB1 125 aa7.21□□□□□ -1.26
CLIP1-214ENST00000540539 SCGB3A1Q96QR1 104 aa7.21□□□□□ -1.26
CLIP1-214ENST00000540539 EGR2P11161 476 aaPredicted RBP7.2□□□□□ -1.26
CLIP1-214ENST00000540539 CLEC2BQ92478 149 aa7.2□□□□□ -1.26
CLIP1-214ENST00000540539 C16orf92Q96LL3 132 aa7.2□□□□□ -1.26
CLIP1-214ENST00000540539 C17orf77Q96MU5 243 aa7.2□□□□□ -1.26
CLIP1-214ENST00000540539 AMELXQ99217 191 aa7.2□□□□□ -1.26
CLIP1-214ENST00000540539 NPC2P61916 151 aa7.2□□□□□ -1.26
CLIP1-214ENST00000540539 FHL2Q14192 279 aa7.2□□□□□ -1.26
CLIP1-214ENST00000540539 NRACQ8N912 160 aa7.2□□□□□ -1.26
CLIP1-214ENST00000540539 LEAP2Q969E1 77 aa7.2□□□□□ -1.26
CLIP1-214ENST00000540539 USP24Q9UPU5 2620 aa7.2□□□□□ -1.26
CLIP1-214ENST00000540539 ATRXP46100 2492 aa7.2□□□□□ -1.26
CLIP1-214ENST00000540539 PRR14LQ5THK1 2151 aa7.2□□□□□ -1.26
CLIP1-214ENST00000540539 A0A0U1RRA0 63 aa7.19□□□□□ -1.26
CLIP1-214ENST00000540539 GRPP07492 148 aa7.19□□□□□ -1.26
CLIP1-214ENST00000540539 RFPL3SP0C7P2 107 aa7.19□□□□□ -1.26
CLIP1-214ENST00000540539 SAA2P0DJI9 122 aaPredicted RBP7.19□□□□□ -1.26
CLIP1-214ENST00000540539 PSMB8P28062 276 aa7.19□□□□□ -1.26
CLIP1-214ENST00000540539 ZNF575Q86XF7 245 aa7.19□□□□□ -1.26
CLIP1-214ENST00000540539 CNFNQ9BYD5 112 aa7.19□□□□□ -1.26
CLIP1-214ENST00000540539 C11orf86A6NJI1 115 aa7.19□□□□□ -1.26
CLIP1-214ENST00000540539 E7EUB6 86 aa7.19□□□□□ -1.26
CLIP1-214ENST00000540539 M0R3E3 92 aa7.19□□□□□ -1.26
CLIP1-214ENST00000540539 IGKV1-16P04430 117 aa7.19□□□□□ -1.26
CLIP1-214ENST00000540539 ERHP84090 104 aaKnown RBP7.19□□□□□ -1.26
CLIP1-214ENST00000540539 C6orf226Q5I0X4 101 aa7.19□□□□□ -1.26
CLIP1-214ENST00000540539 TTTY12Q9BZ98 90 aa7.19□□□□□ -1.26
CLIP1-214ENST00000540539 TRAV26-2A0A0B4J265 109 aa7.18□□□□□ -1.26
CLIP1-214ENST00000540539 SYNJ2BPP57105 145 aa7.18□□□□□ -1.26
CLIP1-214ENST00000540539 LINC00482Q8N8I6 264 aa7.18□□□□□ -1.26
CLIP1-214ENST00000540539 NDUFA4L2Q9NRX3 87 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms