RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 PPP1R17O96001 155 aa9.97□□□□□ -0.81
MSH6-210ENST00000540021 PIP4P2Q8N4L2 257 aa9.97□□□□□ -0.81
MSH6-210ENST00000540021 OR11H6Q8NGC7 330 aa9.97□□□□□ -0.81
MSH6-210ENST00000540021 SPENQ96T58 3664 aaKnown RBP9.97□□□□□ -0.81
MSH6-210ENST00000540021 NPBQ8NG41 125 aa9.97□□□□□ -0.81
MSH6-210ENST00000540021 E9PLD3 99 aa9.97□□□□□ -0.81
MSH6-210ENST00000540021 RPL13AP40429 203 aaKnown RBP9.97□□□□□ -0.81
MSH6-210ENST00000540021 RPL39P62891 51 aaKnown RBP9.97□□□□□ -0.81
MSH6-210ENST00000540021 TAL2Q16559 108 aa9.97□□□□□ -0.81
MSH6-210ENST00000540021 MINOS1Q5TGZ0 78 aa9.97□□□□□ -0.81
MSH6-210ENST00000540021 BPESC1Q9GZL8 116 aa9.97□□□□□ -0.81
MSH6-210ENST00000540021 VCX2Q9H322 139 aa9.97□□□□□ -0.81
MSH6-210ENST00000540021 ERG28Q9UKR5 140 aa9.97□□□□□ -0.81
MSH6-210ENST00000540021 MINOS1-NBL1R4GNA1 71 aa9.97□□□□□ -0.81
MSH6-210ENST00000540021 ZFHX4Q86UP3 3567 aa9.96□□□□□ -0.81
MSH6-210ENST00000540021 OVOL3O00110 214 aa9.96□□□□□ -0.81
MSH6-210ENST00000540021 ZFP2Q6ZN57 461 aa9.96□□□□□ -0.81
MSH6-210ENST00000540021 USP9YO00507 2555 aaPredicted RBP9.96□□□□□ -0.82
MSH6-210ENST00000540021 TRAV12-2A0A075B6T6 113 aa9.96□□□□□ -0.82
MSH6-210ENST00000540021 TRBV7-1A0A0A6YYK4 115 aa9.96□□□□□ -0.82
MSH6-210ENST00000540021 OVOL1O14753 267 aa9.96□□□□□ -0.82
MSH6-210ENST00000540021 Q8N9W7 124 aa9.96□□□□□ -0.82
MSH6-210ENST00000540021 RHPN1-AS1Q9BWJ2 59 aa9.96□□□□□ -0.82
MSH6-210ENST00000540021 MRPS12O15235 138 aaKnown RBP9.95□□□□□ -0.82
MSH6-210ENST00000540021 LGALS1P09382 135 aaKnown RBP9.95□□□□□ -0.82
MSH6-210ENST00000540021 PAPPA-AS1Q5QFB9 102 aa9.95□□□□□ -0.82
MSH6-210ENST00000540021 SPXQ9BT56 116 aa9.95□□□□□ -0.82
MSH6-210ENST00000540021 SDHAF1A6NFY7 115 aa9.95□□□□□ -0.82
MSH6-210ENST00000540021 HOXB4P17483 251 aaPredicted RBP9.95□□□□□ -0.82
MSH6-210ENST00000540021 PLEKHB2Q96CS7 222 aa9.95□□□□□ -0.82
MSH6-210ENST00000540021 TM2D2Q9BX73 214 aa9.95□□□□□ -0.82
MSH6-210ENST00000540021 JPT2Q9H910 190 aa9.95□□□□□ -0.82
MSH6-210ENST00000540021 COX6CP09669 75 aa9.94□□□□□ -0.82
MSH6-210ENST00000540021 TLN2Q9Y4G6 2542 aa9.94□□□□□ -0.82
MSH6-210ENST00000540021 TRAV26-1A0A087WT03 109 aa9.94□□□□□ -0.82
MSH6-210ENST00000540021 NPFFO15130 113 aa9.94□□□□□ -0.82
MSH6-210ENST00000540021 ZFP36P26651 326 aaKnown RBP9.94□□□□□ -0.82
MSH6-210ENST00000540021 ZNF876PQ49A33 203 aa9.94□□□□□ -0.82
MSH6-210ENST00000540021 BAALCQ8WXS3 180 aa9.94□□□□□ -0.82
MSH6-210ENST00000540021 ATMQ13315 3056 aa9.94□□□□□ -0.82
MSH6-210ENST00000540021 IGHV3OR16-12A0A075B7B8 117 aa9.94□□□□□ -0.82
MSH6-210ENST00000540021 VCYO14598 125 aa9.94□□□□□ -0.82
MSH6-210ENST00000540021 ZFAND6Q6FIF0 208 aa9.94□□□□□ -0.82
MSH6-210ENST00000540021 OOSP1A8MZH6 123 aa9.93□□□□□ -0.82
MSH6-210ENST00000540021 RNASE13Q5GAN3 156 aaKnown RBP9.93□□□□□ -0.82
MSH6-210ENST00000540021 C16orf54Q6UWD8 224 aa9.93□□□□□ -0.82
MSH6-210ENST00000540021 PRO3102Q9H379 93 aa9.93□□□□□ -0.82
MSH6-210ENST00000540021 FOXI1Q12951 378 aa9.93□□□□□ -0.82
MSH6-210ENST00000540021 PMVKQ15126 192 aa9.93□□□□□ -0.82
MSH6-210ENST00000540021 PPDPFLQ8WWR9 84 aa9.93□□□□□ -0.82
MSH6-210ENST00000540021 DUX5Q96PT3 197 aa9.93□□□□□ -0.82
MSH6-210ENST00000540021 KLK9Q9UKQ9 250 aa9.93□□□□□ -0.82
MSH6-210ENST00000540021 C11orf86A6NJI1 115 aa9.92□□□□□ -0.82
MSH6-210ENST00000540021 LY6LH3BQJ8 138 aa9.92□□□□□ -0.82
MSH6-210ENST00000540021 H3BUX3 64 aa9.92□□□□□ -0.82
MSH6-210ENST00000540021 GAGE2BQ13066 116 aa9.92□□□□□ -0.82
MSH6-210ENST00000540021 GAGE2EQ4V326 116 aa9.92□□□□□ -0.82
MSH6-210ENST00000540021 Q8NA96 180 aa9.92□□□□□ -0.82
MSH6-210ENST00000540021 GAGE2DQ9UEU5 116 aa9.92□□□□□ -0.82
MSH6-210ENST00000540021 TNFRSF13BO14836 293 aaPredicted RBP9.92□□□□□ -0.82
MSH6-210ENST00000540021 CD28P10747 220 aa9.92□□□□□ -0.82
MSH6-210ENST00000540021 TCF15Q12870 199 aa9.92□□□□□ -0.82
MSH6-210ENST00000540021 C1QTNF4Q9BXJ3 329 aa9.92□□□□□ -0.82
MSH6-210ENST00000540021 GATD1Q8NB37 220 aa9.92□□□□□ -0.82
MSH6-210ENST00000540021 MOB4Q9Y3A3 225 aa9.92□□□□□ -0.82
MSH6-210ENST00000540021 KNCNA6PVL3 124 aa9.91□□□□□ -0.82
MSH6-210ENST00000540021 TRBV12-3P01733 135 aa9.91□□□□□ -0.82
MSH6-210ENST00000540021 UNQ9165/PRO28630Q6UXU0 137 aa9.91□□□□□ -0.82
MSH6-210ENST00000540021 OPRPNQ99935 248 aaPredicted RBP9.91□□□□□ -0.82
MSH6-210ENST00000540021 PRO1854Q9UHT4 67 aa9.91□□□□□ -0.82
MSH6-210ENST00000540021 SPTBN4Q9H254 2564 aa9.91□□□□□ -0.82
MSH6-210ENST00000540021 J3QQQ9 107 aa9.91□□□□□ -0.82
MSH6-210ENST00000540021 MSRB2Q9Y3D2 182 aa9.91□□□□□ -0.82
MSH6-210ENST00000540021 SNRPD3P62318 126 aaKnown RBP9.91□□□□□ -0.82
MSH6-210ENST00000540021 CCDC140Q96MF4 163 aa9.91□□□□□ -0.82
MSH6-210ENST00000540021 RBAKDNA6NC62 111 aa9.9□□□□□ -0.82
MSH6-210ENST00000540021 MT-ATP8P03928 68 aa9.9□□□□□ -0.82
MSH6-210ENST00000540021 UBE2E1P51965 193 aa9.9□□□□□ -0.82
MSH6-210ENST00000540021 TRBV20-1A0A075B6N2 111 aa9.9□□□□□ -0.82
MSH6-210ENST00000540021 RASL10AQ92737 203 aa9.9□□□□□ -0.82
MSH6-210ENST00000540021 TNFRSF18Q9Y5U5 241 aa9.9□□□□□ -0.82
MSH6-210ENST00000540021 LAMA5O15230 3695 aa9.9□□□□□ -0.82
MSH6-210ENST00000540021 USP9XQ93008 2570 aaPredicted RBP9.9□□□□□ -0.82
MSH6-210ENST00000540021 F8W735 103 aaPredicted RBP9.9□□□□□ -0.82
MSH6-210ENST00000540021 SPINK13Q1W4C9 94 aa9.9□□□□□ -0.82
MSH6-210ENST00000540021 NRACQ8N912 160 aa9.9□□□□□ -0.82
MSH6-210ENST00000540021 CLUHP3Q96NS8 147 aa9.9□□□□□ -0.82
MSH6-210ENST00000540021 SLC25A20O43772 301 aa9.89□□□□□ -0.83
MSH6-210ENST00000540021 PRR9Q5T870 116 aa9.89□□□□□ -0.83
MSH6-210ENST00000540021 TSPAN13O95857 204 aa9.89□□□□□ -0.83
MSH6-210ENST00000540021 NTN5Q8WTR8 489 aaPredicted RBP9.89□□□□□ -0.83
MSH6-210ENST00000540021 TMEM262E9PQX1 116 aa9.89□□□□□ -0.83
MSH6-210ENST00000540021 TOMM6Q96B49 74 aa9.89□□□□□ -0.83
MSH6-210ENST00000540021 ZNF625Q96I27 306 aaPredicted RBP9.88□□□□□ -0.83
MSH6-210ENST00000540021 HIVEP3Q5T1R4 2406 aa9.88□□□□□ -0.83
MSH6-210ENST00000540021 IGKV3OR2-268A0A0C4DH90 116 aa9.88□□□□□ -0.83
MSH6-210ENST00000540021 A4D1N5 150 aa9.88□□□□□ -0.83
MSH6-210ENST00000540021 CRYBA4P53673 196 aa9.88□□□□□ -0.83
MSH6-210ENST00000540021 TRAV8-4A0A0B4J246 113 aa9.88□□□□□ -0.83
MSH6-210ENST00000540021 TRPT1Q86TN4 253 aaKnown RBP9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms