RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 DUSP14O95147 198 aaKnown RBP8.57□□□□□ -1.04
SYNE1-237ENST00000539504 TMEM170BQ5T4T1 132 aa8.57□□□□□ -1.04
SYNE1-237ENST00000539504 ZFP2Q6ZN57 461 aa8.57□□□□□ -1.04
SYNE1-237ENST00000539504 C9orf139Q6ZV77 190 aa8.57□□□□□ -1.04
SYNE1-237ENST00000539504 PRO0461Q9UI25 63 aa8.57□□□□□ -1.04
SYNE1-237ENST00000539504 IGHV4-4A0A075B6R2 117 aa8.56□□□□□ -1.04
SYNE1-237ENST00000539504 F6UB75 175 aa8.56□□□□□ -1.04
SYNE1-237ENST00000539504 FOXI1Q12951 378 aa8.56□□□□□ -1.04
SYNE1-237ENST00000539504 C1orf122Q6ZSJ8 110 aa8.56□□□□□ -1.04
SYNE1-237ENST00000539504 LINC00477Q96M19 166 aa8.56□□□□□ -1.04
SYNE1-237ENST00000539504 IGHV3-11P01762 117 aa8.55□□□□□ -1.04
SYNE1-237ENST00000539504 C1QTNF4Q9BXJ3 329 aa8.55□□□□□ -1.04
SYNE1-237ENST00000539504 ATRXP46100 2492 aa8.55□□□□□ -1.04
SYNE1-237ENST00000539504 FOXC1Q12948 553 aa8.55□□□□□ -1.04
SYNE1-237ENST00000539504 CDSNQ15517 529 aa8.55□□□□□ -1.04
SYNE1-237ENST00000539504 TP53TG1Q9Y2A0 90 aa8.55□□□□□ -1.04
SYNE1-237ENST00000539504 LYRM7Q5U5X0 104 aa8.55□□□□□ -1.04
SYNE1-237ENST00000539504 TSPAN13O95857 204 aa8.54□□□□□ -1.04
SYNE1-237ENST00000539504 SPINK8P0C7L1 97 aa8.54□□□□□ -1.04
SYNE1-237ENST00000539504 C11orf86A6NJI1 115 aa8.54□□□□□ -1.04
SYNE1-237ENST00000539504 H7C2G1 150 aa8.54□□□□□ -1.04
SYNE1-237ENST00000539504 SRD5A1P18405 259 aa8.54□□□□□ -1.04
SYNE1-237ENST00000539504 UBE2E1P51965 193 aa8.54□□□□□ -1.04
SYNE1-237ENST00000539504 ZFAND2AQ8N6M9 145 aa8.54□□□□□ -1.04
SYNE1-237ENST00000539504 ZNF292O60281 2723 aa8.54□□□□□ -1.04
SYNE1-237ENST00000539504 TRAV41A0A0B4J266 112 aa8.53□□□□□ -1.04
SYNE1-237ENST00000539504 UNQ9165/PRO28630Q6UXU0 137 aa8.53□□□□□ -1.04
SYNE1-237ENST00000539504 SIRPDQ9H106 197 aa8.53□□□□□ -1.04
SYNE1-237ENST00000539504 A0A087WWL8 130 aa8.53□□□□□ -1.04
SYNE1-237ENST00000539504 OVOL1O14753 267 aa8.53□□□□□ -1.04
SYNE1-237ENST00000539504 FAM74A4Q5TZK3 123 aa8.53□□□□□ -1.04
SYNE1-237ENST00000539504 CFAP126Q5VTH2 177 aa8.53□□□□□ -1.04
SYNE1-237ENST00000539504 CENPVL3A0A0U1RRI6 287 aa8.53□□□□□ -1.04
SYNE1-237ENST00000539504 TRBV12-3P01733 135 aa8.53□□□□□ -1.04
SYNE1-237ENST00000539504 RPL39P62891 51 aaKnown RBP8.53□□□□□ -1.04
SYNE1-237ENST00000539504 UBTD1Q9HAC8 227 aa8.53□□□□□ -1.04
SYNE1-237ENST00000539504 LINC01619G3V211 115 aa8.52□□□□□ -1.04
SYNE1-237ENST00000539504 KIR2DL4Q99706 377 aa8.52□□□□□ -1.04
SYNE1-237ENST00000539504 LENEPQ9Y5L5 61 aa8.52□□□□□ -1.04
SYNE1-237ENST00000539504 DCHS2Q6V1P9 2916 aa8.52□□□□□ -1.04
SYNE1-237ENST00000539504 PPP1R17O96001 155 aa8.52□□□□□ -1.05
SYNE1-237ENST00000539504 JPT2Q9H910 190 aa8.52□□□□□ -1.05
SYNE1-237ENST00000539504 SMCPP49901 116 aaPredicted RBP8.52□□□□□ -1.05
SYNE1-237ENST00000539504 GEMIN7Q9H840 131 aaKnown RBP8.52□□□□□ -1.05
SYNE1-237ENST00000539504 ZNF256Q9Y2P7 627 aaPredicted RBP8.52□□□□□ -1.05
SYNE1-237ENST00000539504 NFE4Q86UQ8 179 aa8.51□□□□□ -1.05
SYNE1-237ENST00000539504 U3KQE9 123 aa8.51□□□□□ -1.05
SYNE1-237ENST00000539504 FAM159AQ6UWV7 190 aa8.51□□□□□ -1.05
SYNE1-237ENST00000539504 A8MWV9 139 aa8.51□□□□□ -1.05
SYNE1-237ENST00000539504 NPFFO15130 113 aa8.51□□□□□ -1.05
SYNE1-237ENST00000539504 MT-ATP8P03928 68 aa8.51□□□□□ -1.05
SYNE1-237ENST00000539504 LGALS3P17931 250 aaKnown RBP8.51□□□□□ -1.05
SYNE1-237ENST00000539504 PMVKQ15126 192 aa8.51□□□□□ -1.05
SYNE1-237ENST00000539504 CLUHP3Q96NS8 147 aa8.51□□□□□ -1.05
SYNE1-237ENST00000539504 RELNP78509 3460 aa8.51□□□□□ -1.05
SYNE1-237ENST00000539504 IGHV3-64A0A075B6Q5 118 aa8.5□□□□□ -1.05
SYNE1-237ENST00000539504 UBE2D1P51668 147 aa8.5□□□□□ -1.05
SYNE1-237ENST00000539504 LY6EQ16553 131 aa8.5□□□□□ -1.05
SYNE1-237ENST00000539504 PAPPA-AS1Q5QFB9 102 aa8.5□□□□□ -1.05
SYNE1-237ENST00000539504 ITLN2Q8WWU7 325 aaPredicted RBP8.5□□□□□ -1.05
SYNE1-237ENST00000539504 RAX2Q96IS3 184 aa8.5□□□□□ -1.05
SYNE1-237ENST00000539504 SVEP1Q4LDE5 3571 aa8.5□□□□□ -1.05
SYNE1-237ENST00000539504 PF4V1P10720 104 aa8.5□□□□□ -1.05
SYNE1-237ENST00000539504 NDUFA11Q86Y39 141 aa8.5□□□□□ -1.05
SYNE1-237ENST00000539504 PPDPFLQ8WWR9 84 aa8.5□□□□□ -1.05
SYNE1-237ENST00000539504 TRAV26-1A0A087WT03 109 aa8.5□□□□□ -1.05
SYNE1-237ENST00000539504 A0A0J9YY99 117 aa8.5□□□□□ -1.05
SYNE1-237ENST00000539504 TCL1BO95988 128 aa8.5□□□□□ -1.05
SYNE1-237ENST00000539504 CD7P09564 240 aa8.5□□□□□ -1.05
SYNE1-237ENST00000539504 Q1RN00 199 aa8.5□□□□□ -1.05
SYNE1-237ENST00000539504 C11orf71Q6IPW1 123 aa8.5□□□□□ -1.05
SYNE1-237ENST00000539504 Q6ZS46 218 aa8.5□□□□□ -1.05
SYNE1-237ENST00000539504 C5orf56Q8N8D9 126 aa8.5□□□□□ -1.05
SYNE1-237ENST00000539504 CREBBPQ92793 2442 aa8.5□□□□□ -1.05
SYNE1-237ENST00000539504 RNASE3P12724 160 aaKnown RBP8.49□□□□□ -1.05
SYNE1-237ENST00000539504 MUC6Q6W4X9 2439 aa8.49□□□□□ -1.05
SYNE1-237ENST00000539504 IGKV3-20P01619 116 aa8.49□□□□□ -1.05
SYNE1-237ENST00000539504 CRYGDP07320 174 aa8.49□□□□□ -1.05
SYNE1-237ENST00000539504 FBXL19-AS1Q494R0 122 aa8.49□□□□□ -1.05
SYNE1-237ENST00000539504 BRD3OSQ6XYD6 125 aa8.49□□□□□ -1.05
SYNE1-237ENST00000539504 GPHB5Q86YW7 130 aa8.49□□□□□ -1.05
SYNE1-237ENST00000539504 BPESC1Q9GZL8 116 aa8.49□□□□□ -1.05
SYNE1-237ENST00000539504 SDHAF1A6NFY7 115 aa8.49□□□□□ -1.05
SYNE1-237ENST00000539504 COX6B1P14854 86 aa8.49□□□□□ -1.05
SYNE1-237ENST00000539504 ATP6V0E2Q8NHE4 81 aa8.49□□□□□ -1.05
SYNE1-237ENST00000539504 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.49□□□□□ -1.05
SYNE1-237ENST00000539504 IGF2RP11717 2491 aa8.49□□□□□ -1.05
SYNE1-237ENST00000539504 VCYO14598 125 aa8.48□□□□□ -1.05
SYNE1-237ENST00000539504 TCTEX1D4Q5JR98 221 aa8.48□□□□□ -1.05
SYNE1-237ENST00000539504 TEN1Q86WV5 123 aa8.48□□□□□ -1.05
SYNE1-237ENST00000539504 CDIP1Q9H305 208 aa8.48□□□□□ -1.05
SYNE1-237ENST00000539504 MOB4Q9Y3A3 225 aa8.48□□□□□ -1.05
SYNE1-237ENST00000539504 ASH1LQ9NR48 2969 aaKnown RBP8.48□□□□□ -1.05
SYNE1-237ENST00000539504 TRAV12-3A0A0B4J271 114 aa8.48□□□□□ -1.05
SYNE1-237ENST00000539504 FAM223BA6NKX1 122 aa8.48□□□□□ -1.05
SYNE1-237ENST00000539504 ADORA2A-AS1P86434 159 aa8.48□□□□□ -1.05
SYNE1-237ENST00000539504 SUMO4Q6EEV6 95 aa8.48□□□□□ -1.05
SYNE1-237ENST00000539504 FAM223AQ8IWN6 122 aa8.48□□□□□ -1.05
SYNE1-237ENST00000539504 RHPN1-AS1Q9BWJ2 59 aa8.48□□□□□ -1.05
SYNE1-237ENST00000539504 TRAV2A0A0B4J234 112 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms