RNA–Protein interactions for RNA: ENST00000538136.1

MSH6-209, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 4,055 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-209ENST00000538136 ZNF492Q9P255 531 aa5.32□□□□□ -1.56
MSH6-209ENST00000538136 TRAPPC1Q9Y5R8 145 aa5.32□□□□□ -1.56
MSH6-209ENST00000538136 PFN1P07737 140 aaKnown RBP5.31□□□□□ -1.56
MSH6-209ENST00000538136 IGLC2P0DOY2 106 aa5.31□□□□□ -1.56
MSH6-209ENST00000538136 PRR9Q5T870 116 aa5.31□□□□□ -1.56
MSH6-209ENST00000538136 TRAV13-1A0A0B4J241 112 aa5.31□□□□□ -1.56
MSH6-209ENST00000538136 PRSS1P07477 247 aa5.31□□□□□ -1.56
MSH6-209ENST00000538136 PRADC1Q9BSG0 188 aa5.31□□□□□ -1.56
MSH6-209ENST00000538136 SAV1Q9H4B6 383 aaPredicted RBP5.31□□□□□ -1.56
MSH6-209ENST00000538136 RPP21Q9H633 154 aaKnown RBP5.31□□□□□ -1.56
MSH6-209ENST00000538136 TRAV25A0A0B4J276 109 aa5.31□□□□□ -1.56
MSH6-209ENST00000538136 ZNF253O75346 499 aa5.31□□□□□ -1.56
MSH6-209ENST00000538136 IGHV3-64A0A075B6Q5 118 aa5.3□□□□□ -1.56
MSH6-209ENST00000538136 HSBP1O75506 76 aa5.3□□□□□ -1.56
MSH6-209ENST00000538136 RPL23P62829 140 aaKnown RBP5.3□□□□□ -1.56
MSH6-209ENST00000538136 PDE6HQ13956 83 aa5.3□□□□□ -1.56
MSH6-209ENST00000538136 CLLU1Q5K131 121 aa5.3□□□□□ -1.56
MSH6-209ENST00000538136 AP1S3Q96PC3 154 aa5.3□□□□□ -1.56
MSH6-209ENST00000538136 A0A1B0GUT8 65 aa5.3□□□□□ -1.56
MSH6-209ENST00000538136 ZFP30Q9Y2G7 519 aa5.3□□□□□ -1.56
MSH6-209ENST00000538136 IGKV2D-24A0A075B6R9 120 aa5.3□□□□□ -1.56
MSH6-209ENST00000538136 HLA-DQA1P01909 254 aa5.3□□□□□ -1.56
MSH6-209ENST00000538136 ANGP03950 147 aaKnown RBP5.3□□□□□ -1.56
MSH6-209ENST00000538136 CCL18P55774 89 aa5.3□□□□□ -1.56
MSH6-209ENST00000538136 TMEM136Q6ZRR5 245 aa5.3□□□□□ -1.56
MSH6-209ENST00000538136 CELA1Q9UNI1 258 aa5.3□□□□□ -1.56
MSH6-209ENST00000538136 KLK5Q9Y337 293 aaPredicted RBP5.3□□□□□ -1.56
MSH6-209ENST00000538136 TGIF2-C20orf24A0A0A6YYL0 155 aa5.29□□□□□ -1.56
MSH6-209ENST00000538136 CRPP02741 224 aa5.29□□□□□ -1.56
MSH6-209ENST00000538136 TRGC1P0CF51 173 aa5.29□□□□□ -1.56
MSH6-209ENST00000538136 RPL36AP83881 106 aaKnown RBP5.29□□□□□ -1.56
MSH6-209ENST00000538136 MBD3L1Q8WWY6 194 aa5.29□□□□□ -1.56
MSH6-209ENST00000538136 RPL36ALQ969Q0 106 aaKnown RBP5.29□□□□□ -1.56
MSH6-209ENST00000538136 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.29□□□□□ -1.56
MSH6-209ENST00000538136 WDR73Q6P4I2 378 aa5.29□□□□□ -1.56
MSH6-209ENST00000538136 PMCHL2Q9BQD1 86 aa5.29□□□□□ -1.56
MSH6-209ENST00000538136 TXNDC17Q9BRA2 123 aa5.29□□□□□ -1.56
MSH6-209ENST00000538136 PYGO2Q9BRQ0 406 aa5.29□□□□□ -1.56
MSH6-209ENST00000538136 HHLA3Q9XRX5 114 aa5.29□□□□□ -1.56
MSH6-209ENST00000538136 FHL3Q13643 280 aa5.29□□□□□ -1.56
MSH6-209ENST00000538136 PMCHL1Q16048 86 aa5.29□□□□□ -1.56
MSH6-209ENST00000538136 TCAPO15273 167 aa5.28□□□□□ -1.56
MSH6-209ENST00000538136 LINC00322Q6ZN03 302 aaPredicted RBP5.28□□□□□ -1.56
MSH6-209ENST00000538136 WFDC9Q8NEX5 89 aa5.28□□□□□ -1.56
MSH6-209ENST00000538136 FBLL1A6NHQ2 334 aaKnown RBP5.28□□□□□ -1.56
MSH6-209ENST00000538136 TYMSP04818 313 aa5.28□□□□□ -1.56
MSH6-209ENST00000538136 CLRN3Q8NCR9 226 aa5.28□□□□□ -1.56
MSH6-209ENST00000538136 MRPL53Q96EL3 112 aaKnown RBP5.28□□□□□ -1.56
MSH6-209ENST00000538136 FNDC10F2Z333 226 aa5.28□□□□□ -1.56
MSH6-209ENST00000538136 ZNF506Q5JVG8 444 aa5.28□□□□□ -1.56
MSH6-209ENST00000538136 ATRAIDQ6UW56 229 aa5.28□□□□□ -1.56
MSH6-209ENST00000538136 LINC01551Q86U37 167 aa5.28□□□□□ -1.56
MSH6-209ENST00000538136 KLK12Q9UKR0 248 aa5.28□□□□□ -1.56
MSH6-209ENST00000538136 PCP4L1A6NKN8 68 aa5.27□□□□□ -1.57
MSH6-209ENST00000538136 NPIPB6E9PJ23 425 aa5.27□□□□□ -1.57
MSH6-209ENST00000538136 TAS2R60P59551 318 aa5.27□□□□□ -1.57
MSH6-209ENST00000538136 IQCJQ1A5X6 159 aa5.27□□□□□ -1.57
MSH6-209ENST00000538136 DPPA3Q6W0C5 159 aa5.27□□□□□ -1.57
MSH6-209ENST00000538136 KIR2DL4Q99706 377 aa5.27□□□□□ -1.57
MSH6-209ENST00000538136 INS-IGF2F8WCM5 200 aa5.27□□□□□ -1.57
MSH6-209ENST00000538136 TMEM250H0YL14 139 aa5.27□□□□□ -1.57
MSH6-209ENST00000538136 FUSP35637 526 aaKnown RBP eCLIP5.27□□□□□ -1.57
MSH6-209ENST00000538136 COTL1Q14019 142 aa5.27□□□□□ -1.57
MSH6-209ENST00000538136 AARDQ4LEZ3 155 aa5.27□□□□□ -1.57
MSH6-209ENST00000538136 C1orf158Q8N1D5 194 aa5.27□□□□□ -1.57
MSH6-209ENST00000538136 NDUFAF3Q9BU61 184 aa5.27□□□□□ -1.57
MSH6-209ENST00000538136 FBN3Q75N90 2809 aa5.27□□□□□ -1.57
MSH6-209ENST00000538136 FLG2Q5D862 2391 aaPredicted RBP5.27□□□□□ -1.57
MSH6-209ENST00000538136 APCSP02743 223 aa5.27□□□□□ -1.57
MSH6-209ENST00000538136 SUMO2P61956 95 aaKnown RBP5.27□□□□□ -1.57
MSH6-209ENST00000538136 MORN3Q6PF18 240 aaPredicted RBP5.27□□□□□ -1.57
MSH6-209ENST00000538136 Q8N976 141 aa5.27□□□□□ -1.57
MSH6-209ENST00000538136 TMEM14CQ9P0S9 112 aa5.27□□□□□ -1.57
MSH6-209ENST00000538136 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.26□□□□□ -1.57
MSH6-209ENST00000538136 IGKV2-29A2NJV5 120 aaPredicted RBP5.26□□□□□ -1.57
MSH6-209ENST00000538136 AMTP48728 403 aa5.26□□□□□ -1.57
MSH6-209ENST00000538136 KRTDAPP60985 99 aa5.26□□□□□ -1.57
MSH6-209ENST00000538136 VWC2Q2TAL6 325 aa5.26□□□□□ -1.57
MSH6-209ENST00000538136 KPRPQ5T749 579 aaPredicted RBP5.26□□□□□ -1.57
MSH6-209ENST00000538136 LYPD1Q8N2G4 141 aa5.26□□□□□ -1.57
MSH6-209ENST00000538136 FAM19A2Q8N3H0 131 aa5.26□□□□□ -1.57
MSH6-209ENST00000538136 OR5AL1P0C617 328 aa5.26□□□□□ -1.57
MSH6-209ENST00000538136 SAMD5Q5TGI4 173 aa5.26□□□□□ -1.57
MSH6-209ENST00000538136 AMTNQ6UX39 209 aa5.26□□□□□ -1.57
MSH6-209ENST00000538136 TRPT1Q86TN4 253 aaKnown RBP5.26□□□□□ -1.57
MSH6-209ENST00000538136 CLUHP3Q96NS8 147 aa5.26□□□□□ -1.57
MSH6-209ENST00000538136 C11orf1Q9H5F2 150 aa5.26□□□□□ -1.57
MSH6-209ENST00000538136 C1orf196B1AJZ1 125 aa5.26□□□□□ -1.57
MSH6-209ENST00000538136 D6R8Y8 96 aa5.26□□□□□ -1.57
MSH6-209ENST00000538136 PLP1P60201 277 aa5.26□□□□□ -1.57
MSH6-209ENST00000538136 RPL39LQ96EH5 51 aaKnown RBP5.26□□□□□ -1.57
MSH6-209ENST00000538136 PRELID3AQ96N28 172 aa5.26□□□□□ -1.57
MSH6-209ENST00000538136 C11orf21Q9P2W6 132 aa5.26□□□□□ -1.57
MSH6-209ENST00000538136 M0R2P5 195 aa5.25□□□□□ -1.57
MSH6-209ENST00000538136 CRIP2P52943 208 aaPredicted RBP5.25□□□□□ -1.57
MSH6-209ENST00000538136 FAM74A3Q4VXF1 159 aa5.25□□□□□ -1.57
MSH6-209ENST00000538136 S100A8P05109 93 aa5.25□□□□□ -1.57
MSH6-209ENST00000538136 ZFAND2AQ8N6M9 145 aa5.25□□□□□ -1.57
MSH6-209ENST00000538136 NUP35Q8NFH5 326 aa5.25□□□□□ -1.57
MSH6-209ENST00000538136 C16orf74Q96GX8 76 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms