RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 TSSK6Q9BXA6 273 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 C20orf27Q9GZN8 174 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 PRO1933Q9H354 126 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 SMCO4Q9NRQ5 59 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 TMEM14BQ9NUH8 114 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 PLEKHJ1Q9NW61 149 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 FAM206AQ9NX38 181 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 ABRACLQ9P1F3 81 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 TRAPPC2LQ9UL33 140 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 RBM7Q9Y580 266 aaKnown RBP1.6□□□□□ -2.15
SYNE1-232ENST00000535081 R4GMQ9 66 aa1.6□□□□□ -2.15
SYNE1-232ENST00000535081 TRAV30A0A087WSZ9 112 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP1.59□□□□□ -2.15
SYNE1-232ENST00000535081 TGIF2-C20orf24A0A0A6YYL0 155 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 MCRIP1C9JLW8 97 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 PPP5D1E7EU14 171 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 ZNF670-ZNF695F2Z2N8 137 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 M0R036 132 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 FFAR1O14842 300 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 CCL25O15444 150 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 FABP7O15540 132 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 MPDU1O75352 247 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 SC5DO75845 299 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 OR7C1O76099 320 aaPredicted RBP1.59□□□□□ -2.15
SYNE1-232ENST00000535081 MT-CO2P00403 227 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 CFDP00746 253 aaPredicted RBP1.59□□□□□ -2.15
SYNE1-232ENST00000535081 OXTP01178 125 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 TTRP02766 147 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 SMR3BP02814 79 aaPredicted RBP1.59□□□□□ -2.15
SYNE1-232ENST00000535081 REG1AP05451 166 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 UCHL1P09936 223 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 DEFA4P12838 97 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 HTN3P15516 51 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 ATF1P18846 271 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 CRHBPP24387 322 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 ZNF137PP52743 207 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 FXYD6P3P58550 94 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 NCS1P62166 190 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 TPBGQ13641 420 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 TNXAQ16473 311 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 TMEM241Q24JQ0 296 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 VMA21Q3ZAQ7 101 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 OCIAD2Q56VL3 154 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 PDZD11Q5EBL8 140 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 COL5A1-AS1Q5SY13 56 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 TMEM244Q5VVB8 128 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 GLYATQ6IB77 296 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 EIF5AL1Q6IS14 154 aaKnown RBP1.59□□□□□ -2.15
SYNE1-232ENST00000535081 ZNF322Q6U7Q0 402 aaPredicted RBP1.59□□□□□ -2.15
SYNE1-232ENST00000535081 DEFB107AQ8IZN7 70 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 OR5D14Q8NGL3 314 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 RNASEH2CQ8TDP1 164 aaKnown RBP1.59□□□□□ -2.15
SYNE1-232ENST00000535081 GALMQ96C23 342 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 OR2A7Q96R45 310 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 AMELYQ99218 206 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 GINS4Q9BRT9 223 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 MRPL20Q9BYC9 149 aaKnown RBP1.59□□□□□ -2.15
SYNE1-232ENST00000535081 CMC2Q9NRP2 79 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 JPT1Q9UK76 154 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 FLVCR2Q9UPI3 526 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 TRAPPC1Q9Y5R8 145 aa1.59□□□□□ -2.15
SYNE1-232ENST00000535081 DNAH11Q96DT5 4516 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 TRAV8-7A0A075B6U6 113 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 TRBV7-1A0A0A6YYK4 115 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 IGHV6-1A0A0B4J1U7 121 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 TCRBV3S1A0A5B6 114 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 IGSF23A1L1A6 192 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 GPR31O00270 319 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 SIVA1O15304 175 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 YPEL1O60688 119 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 HSBP1O75506 76 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 GCGP01275 180 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 HBZP02008 142 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 PMP2P02689 132 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 PET100P0DJ07 73 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 SAA2P0DJI9 122 aaPredicted RBP1.58□□□□□ -2.16
SYNE1-232ENST00000535081 APELAP0DMC3 54 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 CGB3P0DN86 165 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 CGB7P0DN87 165 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 AKR1C4P17516 323 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 ALOX5APP20292 161 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 CCL1P22362 96 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 HTR2CP28335 458 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 S100GP29377 79 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 HCCSP53701 268 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 EMP1P54849 157 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 CKS1BP61024 79 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 RANP62826 216 aaKnown RBP1.58□□□□□ -2.16
SYNE1-232ENST00000535081 RPL18AQ02543 176 aaKnown RBP1.58□□□□□ -2.16
SYNE1-232ENST00000535081 JOSD1Q15040 202 aaPredicted RBP1.58□□□□□ -2.16
SYNE1-232ENST00000535081 CDK5R1Q15078 307 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 RTL8BQ17RB0 113 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 MORN2Q502X0 79 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 LINC01590Q5TEZ4 76 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 CLEC19AQ6UXS0 136 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 ZNF833PQ6ZTB9 187 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 AHSA2Q719I0 299 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 Q8NAQ8 132 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 INO80EQ8NBZ0 244 aaPredicted RBP1.58□□□□□ -2.16
SYNE1-232ENST00000535081 ZNF439Q8NDP4 499 aa1.58□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms