RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 FOXI2Q6ZQN5 318 aa14.54□□□□□ -0.08
VPS28-213ENST00000530983 TOMM6Q96B49 74 aa14.54□□□□□ -0.08
VPS28-213ENST00000530983 C20orf78Q9BR46 151 aa14.54□□□□□ -0.08
VPS28-213ENST00000530983 AGRNO00468 2067 aa14.53□□□□□ -0.08
VPS28-213ENST00000530983 F8VRH5 84 aa14.53□□□□□ -0.08
VPS28-213ENST00000530983 H7C1H1 209 aa14.53□□□□□ -0.08
VPS28-213ENST00000530983 BRI3O95415 125 aa14.53□□□□□ -0.08
VPS28-213ENST00000530983 RNASE4P34096 147 aaKnown RBP14.53□□□□□ -0.08
VPS28-213ENST00000530983 RPL11P62913 178 aaKnown RBP14.53□□□□□ -0.08
VPS28-213ENST00000530983 USMG5Q96IX5 58 aa14.53□□□□□ -0.08
VPS28-213ENST00000530983 COL12A1Q99715 3063 aa14.53□□□□□ -0.08
VPS28-213ENST00000530983 F8W1H4 67 aa14.53□□□□□ -0.08
VPS28-213ENST00000530983 APRG1Q8IVJ8 170 aa14.53□□□□□ -0.08
VPS28-213ENST00000530983 H3BUA1 57 aa14.52□□□□□ -0.08
VPS28-213ENST00000530983 GNRH2O43555 120 aa14.52□□□□□ -0.08
VPS28-213ENST00000530983 SCGB3A1Q96QR1 104 aa14.52□□□□□ -0.08
VPS28-213ENST00000530983 IGKV3-7A0A075B6H7 116 aa14.52□□□□□ -0.09
VPS28-213ENST00000530983 H3BUX3 64 aa14.52□□□□□ -0.09
VPS28-213ENST00000530983 MED14OSP0DP75 135 aa14.52□□□□□ -0.09
VPS28-213ENST00000530983 RNASE3P12724 160 aaKnown RBP14.52□□□□□ -0.09
VPS28-213ENST00000530983 SLC25A16P16260 332 aa14.52□□□□□ -0.09
VPS28-213ENST00000530983 LCNL1Q6ZST4 164 aa14.52□□□□□ -0.09
VPS28-213ENST00000530983 SH2D6Q7Z4S9 175 aa14.52□□□□□ -0.09
VPS28-213ENST00000530983 SPOCK3Q9BQ16 436 aa14.52□□□□□ -0.09
VPS28-213ENST00000530983 MUC4Q99102 2169 aa14.51□□□□□ -0.09
VPS28-213ENST00000530983 H3BMG7 143 aa14.51□□□□□ -0.09
VPS28-213ENST00000530983 GNLYP22749 145 aa14.51□□□□□ -0.09
VPS28-213ENST00000530983 TAL2Q16559 108 aa14.51□□□□□ -0.09
VPS28-213ENST00000530983 Q6ZS46 218 aa14.51□□□□□ -0.09
VPS28-213ENST00000530983 NEXN-AS1Q8NBZ9 246 aa14.51□□□□□ -0.09
VPS28-213ENST00000530983 ZNF479Q96JC4 524 aa14.51□□□□□ -0.09
VPS28-213ENST00000530983 A6NDX4 124 aa14.5□□□□□ -0.09
VPS28-213ENST00000530983 MGPP08493 103 aa14.5□□□□□ -0.09
VPS28-213ENST00000530983 PF4V1P10720 104 aa14.5□□□□□ -0.09
VPS28-213ENST00000530983 BLCAPP62952 87 aa14.5□□□□□ -0.09
VPS28-213ENST00000530983 RHPN1-AS1Q9BWJ2 59 aa14.5□□□□□ -0.09
VPS28-213ENST00000530983 SPAG8Q99932 426 aaPredicted RBP14.5□□□□□ -0.09
VPS28-213ENST00000530983 PIMREGQ9BSJ6 248 aa14.5□□□□□ -0.09
VPS28-213ENST00000530983 C12orf74Q32Q52 190 aa14.49□□□□□ -0.09
VPS28-213ENST00000530983 ETDBQ3ZM63 59 aa14.49□□□□□ -0.09
VPS28-213ENST00000530983 AMTNQ6UX39 209 aa14.49□□□□□ -0.09
VPS28-213ENST00000530983 C2orf66Q6UXQ4 117 aa14.49□□□□□ -0.09
VPS28-213ENST00000530983 SPATA25Q9BR10 227 aa14.49□□□□□ -0.09
VPS28-213ENST00000530983 TRBV7-9A0A0J9YWB2 115 aa14.48□□□□□ -0.09
VPS28-213ENST00000530983 MAP1AP78559 2803 aaPredicted RBP14.48□□□□□ -0.09
VPS28-213ENST00000530983 NDUFS8O00217 210 aa14.48□□□□□ -0.09
VPS28-213ENST00000530983 C10orf105Q8TEF2 133 aa14.48□□□□□ -0.09
VPS28-213ENST00000530983 J3QR89 54 aa14.47□□□□□ -0.09
VPS28-213ENST00000530983 IGLV1-40P01703 118 aa14.47□□□□□ -0.09
VPS28-213ENST00000530983 MTURNQ8N3F0 131 aa14.47□□□□□ -0.09
VPS28-213ENST00000530983 BAALCQ8WXS3 180 aa14.47□□□□□ -0.09
VPS28-213ENST00000530983 DAZ1Q9NQZ3 744 aaKnown RBP14.47□□□□□ -0.09
VPS28-213ENST00000530983 NXPH4O95158 308 aa14.47□□□□□ -0.09
VPS28-213ENST00000530983 EDN2P20800 178 aa14.47□□□□□ -0.09
VPS28-213ENST00000530983 CELSR2Q9HCU4 2923 aa14.46□□□□□ -0.09
VPS28-213ENST00000530983 OR11H12B2RN74 326 aa14.46□□□□□ -0.09
VPS28-213ENST00000530983 SRD5A1P18405 259 aa14.46□□□□□ -0.09
VPS28-213ENST00000530983 POM121L12Q8N7R1 296 aa14.46□□□□□ -0.09
VPS28-213ENST00000530983 OR11H1Q8NG94 326 aa14.46□□□□□ -0.09
VPS28-213ENST00000530983 OR11H2Q8NH07 326 aa14.46□□□□□ -0.09
VPS28-213ENST00000530983 HIST1H4GQ99525 98 aa14.46□□□□□ -0.09
VPS28-213ENST00000530983 TRBV7-3A0A075B6L6 115 aa14.46□□□□□ -0.1
VPS28-213ENST00000530983 PRO0461Q9UI25 63 aa14.46□□□□□ -0.1
VPS28-213ENST00000530983 KIF25-AS1Q9Y6Z4 181 aa14.46□□□□□ -0.1
VPS28-213ENST00000530983 MYMXA0A1B0GTQ4 84 aa14.45□□□□□ -0.1
VPS28-213ENST00000530983 LINC01619G3V211 115 aa14.45□□□□□ -0.1
VPS28-213ENST00000530983 LINC00315P59091 139 aa14.45□□□□□ -0.1
VPS28-213ENST00000530983 KLLNB2CW77 178 aa14.44□□□□□ -0.1
VPS28-213ENST00000530983 INSL3P51460 131 aa14.44□□□□□ -0.1
VPS28-213ENST00000530983 PRSS29PA6NIE9 313 aa14.44□□□□□ -0.1
VPS28-213ENST00000530983 GAGE13Q4V321 117 aa14.44□□□□□ -0.1
VPS28-213ENST00000530983 CCL19Q99731 98 aa14.44□□□□□ -0.1
VPS28-213ENST00000530983 A0A1B0GV72 72 aa14.43□□□□□ -0.1
VPS28-213ENST00000530983 PPP1R17O96001 155 aa14.43□□□□□ -0.1
VPS28-213ENST00000530983 CFHR3Q02985 330 aa14.43□□□□□ -0.1
VPS28-213ENST00000530983 RRN3P1Q2M238 152 aa14.43□□□□□ -0.1
VPS28-213ENST00000530983 IGHV4-30-2A0A087WSY4 118 aa14.42□□□□□ -0.1
VPS28-213ENST00000530983 A0A1B0GWB2 263 aa14.42□□□□□ -0.1
VPS28-213ENST00000530983 DCANP1Q8TF63 244 aa14.42□□□□□ -0.1
VPS28-213ENST00000530983 JPT2Q9H910 190 aa14.42□□□□□ -0.1
VPS28-213ENST00000530983 IGHV4OR15-8A0A075B7B6 117 aa14.41□□□□□ -0.1
VPS28-213ENST00000530983 A0A087WW49 117 aa14.41□□□□□ -0.1
VPS28-213ENST00000530983 DUSP14O95147 198 aaKnown RBP14.41□□□□□ -0.1
VPS28-213ENST00000530983 LGALS1P09382 135 aaKnown RBP14.41□□□□□ -0.1
VPS28-213ENST00000530983 CRYBG3Q68DQ2 2970 aa14.41□□□□□ -0.1
VPS28-213ENST00000530983 PRADC1Q9BSG0 188 aa14.41□□□□□ -0.1
VPS28-213ENST00000530983 MSMBP08118 114 aa14.41□□□□□ -0.1
VPS28-213ENST00000530983 WFDC12Q8WWY7 111 aa14.41□□□□□ -0.1
VPS28-213ENST00000530983 CLUHP3Q96NS8 147 aa14.41□□□□□ -0.1
VPS28-213ENST00000530983 CRYGDP07320 174 aa14.4□□□□□ -0.1
VPS28-213ENST00000530983 FAM159AQ6UWV7 190 aa14.4□□□□□ -0.1
VPS28-213ENST00000530983 K7EMT4 169 aa14.4□□□□□ -0.11
VPS28-213ENST00000530983 TSHBP01222 138 aa14.4□□□□□ -0.11
VPS28-213ENST00000530983 TMEM95Q3KNT9 176 aa14.4□□□□□ -0.11
VPS28-213ENST00000530983 AVPP01185 164 aa14.39□□□□□ -0.11
VPS28-213ENST00000530983 RPL32P62910 135 aaKnown RBP14.39□□□□□ -0.11
VPS28-213ENST00000530983 SUMO4Q6EEV6 95 aa14.39□□□□□ -0.11
VPS28-213ENST00000530983 CYSLTR1Q9Y271 337 aa14.39□□□□□ -0.11
VPS28-213ENST00000530983 SPG11Q96JI7 2443 aa14.39□□□□□ -0.11
VPS28-213ENST00000530983 POLR2KP53803 58 aaKnown RBP14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 84.9 ms