RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 FAM110DQ8TAY7 271 aaPredicted RBP10.83□□□□□ -0.68
USP48-213ENST00000529637 PRADC1Q9BSG0 188 aa10.83□□□□□ -0.68
USP48-213ENST00000529637 IGHV7-4-1A0A0J9YVY3 117 aa10.83□□□□□ -0.68
USP48-213ENST00000529637 CACNA1AO00555 2505 aa10.83□□□□□ -0.68
USP48-213ENST00000529637 TMEM190Q8WZ59 177 aa10.82□□□□□ -0.68
USP48-213ENST00000529637 ZNF815PA8K554 130 aa10.82□□□□□ -0.68
USP48-213ENST00000529637 SLC25A16P16260 332 aa10.82□□□□□ -0.68
USP48-213ENST00000529637 EBI3Q14213 229 aa10.82□□□□□ -0.68
USP48-213ENST00000529637 TCL1BO95988 128 aa10.82□□□□□ -0.68
USP48-213ENST00000529637 SRSF9Q13242 221 aaKnown RBP eCLIP10.82□□□□□ -0.68
USP48-213ENST00000529637 ANXA2RQ3ZCQ2 193 aa10.82□□□□□ -0.68
USP48-213ENST00000529637 SCGB1D4Q6XE38 83 aa10.82□□□□□ -0.68
USP48-213ENST00000529637 ATP6V0E2Q8NHE4 81 aa10.82□□□□□ -0.68
USP48-213ENST00000529637 SCGB3A1Q96QR1 104 aa10.82□□□□□ -0.68
USP48-213ENST00000529637 METTL26Q96S19 204 aa10.82□□□□□ -0.68
USP48-213ENST00000529637 ERG28Q9UKR5 140 aa10.82□□□□□ -0.68
USP48-213ENST00000529637 CELSR1Q9NYQ6 3014 aa10.81□□□□□ -0.68
USP48-213ENST00000529637 EMP1P54849 157 aa10.81□□□□□ -0.68
USP48-213ENST00000529637 BRD3OSQ6XYD6 125 aa10.81□□□□□ -0.68
USP48-213ENST00000529637 AGPAT4-IT1Q9H0P7 198 aa10.81□□□□□ -0.68
USP48-213ENST00000529637 H3BVH4 76 aa10.81□□□□□ -0.68
USP48-213ENST00000529637 BUB3O43684 328 aa10.81□□□□□ -0.68
USP48-213ENST00000529637 UBE2D1P51668 147 aa10.81□□□□□ -0.68
USP48-213ENST00000529637 SRSF2Q01130 221 aaKnown RBP10.81□□□□□ -0.68
USP48-213ENST00000529637 NEXN-AS1Q8NBZ9 246 aa10.81□□□□□ -0.68
USP48-213ENST00000529637 EEF1AKMT3Q96AZ1 226 aa10.81□□□□□ -0.68
USP48-213ENST00000529637 IGKV3-7A0A075B6H7 116 aa10.8□□□□□ -0.68
USP48-213ENST00000529637 NPFFO15130 113 aa10.8□□□□□ -0.68
USP48-213ENST00000529637 RASL10AQ92737 203 aa10.8□□□□□ -0.68
USP48-213ENST00000529637 UBE2D3P61077 147 aa10.8□□□□□ -0.68
USP48-213ENST00000529637 UBE2D2P62837 147 aa10.8□□□□□ -0.68
USP48-213ENST00000529637 CCDC140Q96MF4 163 aa10.8□□□□□ -0.68
USP48-213ENST00000529637 DOPEY2Q9Y3R5 2298 aa10.8□□□□□ -0.68
USP48-213ENST00000529637 CD7P09564 240 aa10.8□□□□□ -0.68
USP48-213ENST00000529637 RPL11P62913 178 aaKnown RBP10.8□□□□□ -0.68
USP48-213ENST00000529637 SPANXN1Q5VSR9 72 aa10.8□□□□□ -0.68
USP48-213ENST00000529637 RPL39LQ96EH5 51 aaKnown RBP10.8□□□□□ -0.68
USP48-213ENST00000529637 LINC01619G3V211 115 aa10.79□□□□□ -0.68
USP48-213ENST00000529637 LY6EQ16553 131 aa10.79□□□□□ -0.68
USP48-213ENST00000529637 TEN1Q86WV5 123 aa10.79□□□□□ -0.68
USP48-213ENST00000529637 SMIM2Q9BVW6 85 aa10.79□□□□□ -0.68
USP48-213ENST00000529637 TRAV12-1A0A0B4J245 112 aa10.79□□□□□ -0.68
USP48-213ENST00000529637 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.79□□□□□ -0.68
USP48-213ENST00000529637 PPDPFLQ8WWR9 84 aa10.79□□□□□ -0.68
USP48-213ENST00000529637 ANAPC13Q9BS18 74 aa10.79□□□□□ -0.68
USP48-213ENST00000529637 ZFAND3Q9H8U3 227 aa10.79□□□□□ -0.68
USP48-213ENST00000529637 CENPVL3A0A0U1RRI6 287 aa10.79□□□□□ -0.68
USP48-213ENST00000529637 BAALCQ8WXS3 180 aa10.79□□□□□ -0.68
USP48-213ENST00000529637 C16orf92Q96LL3 132 aa10.79□□□□□ -0.68
USP48-213ENST00000529637 USP9YO00507 2555 aaPredicted RBP10.78□□□□□ -0.68
USP48-213ENST00000529637 LMO4P61968 165 aa10.78□□□□□ -0.68
USP48-213ENST00000529637 ACACBO00763 2458 aa10.78□□□□□ -0.68
USP48-213ENST00000529637 PKD1L2Q7Z442 2459 aa10.78□□□□□ -0.68
USP48-213ENST00000529637 IGF1P05019 195 aa10.78□□□□□ -0.68
USP48-213ENST00000529637 COX6B1P14854 86 aa10.78□□□□□ -0.68
USP48-213ENST00000529637 Q6ZS46 218 aa10.78□□□□□ -0.68
USP48-213ENST00000529637 B5MCH6 92 aa10.77□□□□□ -0.68
USP48-213ENST00000529637 NDUFA11Q86Y39 141 aa10.77□□□□□ -0.68
USP48-213ENST00000529637 ANKRD29Q8N6D5 301 aa10.77□□□□□ -0.68
USP48-213ENST00000529637 SLC50A1Q9BRV3 221 aa10.77□□□□□ -0.68
USP48-213ENST00000529637 MYO18BQ8IUG5 2567 aa10.77□□□□□ -0.68
USP48-213ENST00000529637 C19orf84I3L1E1 186 aa10.77□□□□□ -0.69
USP48-213ENST00000529637 TOMM6Q96B49 74 aa10.77□□□□□ -0.69
USP48-213ENST00000529637 PIEZO1Q92508 2521 aa10.77□□□□□ -0.69
USP48-213ENST00000529637 IGHV3-11P01762 117 aa10.77□□□□□ -0.69
USP48-213ENST00000529637 FAM208BQ5VWN6 2430 aa10.77□□□□□ -0.69
USP48-213ENST00000529637 NHLRC4P0CG21 123 aaPredicted RBP10.76□□□□□ -0.69
USP48-213ENST00000529637 CRIP2P52943 208 aaPredicted RBP10.76□□□□□ -0.69
USP48-213ENST00000529637 PRR9Q5T870 116 aa10.76□□□□□ -0.69
USP48-213ENST00000529637 TRAV41A0A0B4J266 112 aa10.76□□□□□ -0.69
USP48-213ENST00000529637 M0R381 172 aa10.76□□□□□ -0.69
USP48-213ENST00000529637 GNLYP22749 145 aa10.76□□□□□ -0.69
USP48-213ENST00000529637 C2orf66Q6UXQ4 117 aa10.76□□□□□ -0.69
USP48-213ENST00000529637 CENPEQ02224 2701 aa10.75□□□□□ -0.69
USP48-213ENST00000529637 CLPSL1A2RUU4 121 aa10.75□□□□□ -0.69
USP48-213ENST00000529637 ZNF688P0C7X2 276 aa10.75□□□□□ -0.69
USP48-213ENST00000529637 AJUBAQ96IF1 538 aa10.75□□□□□ -0.69
USP48-213ENST00000529637 HIF1ANQ9NWT6 349 aa10.75□□□□□ -0.69
USP48-213ENST00000529637 A6NJY4 79 aa10.75□□□□□ -0.69
USP48-213ENST00000529637 CFC1BP0CG36 223 aa10.75□□□□□ -0.69
USP48-213ENST00000529637 CFC1P0CG37 223 aa10.75□□□□□ -0.69
USP48-213ENST00000529637 SUMO2P61956 95 aaKnown RBP10.75□□□□□ -0.69
USP48-213ENST00000529637 ITPR1Q14643 2758 aa10.75□□□□□ -0.69
USP48-213ENST00000529637 CRYGDP07320 174 aa10.75□□□□□ -0.69
USP48-213ENST00000529637 ARL3P36405 182 aa10.75□□□□□ -0.69
USP48-213ENST00000529637 C5orf56Q8N8D9 126 aa10.75□□□□□ -0.69
USP48-213ENST00000529637 TRBV7-1A0A0A6YYK4 115 aa10.74□□□□□ -0.69
USP48-213ENST00000529637 TRAV8-2A0A0B4J237 113 aa10.74□□□□□ -0.69
USP48-213ENST00000529637 DEFB1P60022 68 aa10.74□□□□□ -0.69
USP48-213ENST00000529637 C14orf178Q8N769 122 aaPredicted RBP10.74□□□□□ -0.69
USP48-213ENST00000529637 A0A0J9YY99 117 aa10.74□□□□□ -0.69
USP48-213ENST00000529637 A8MWV9 139 aa10.74□□□□□ -0.69
USP48-213ENST00000529637 RNF223E7ERA6 249 aa10.74□□□□□ -0.69
USP48-213ENST00000529637 TSPEAR-AS2P59090 65 aa10.74□□□□□ -0.69
USP48-213ENST00000529637 TRBV20-1A0A075B6N2 111 aa10.73□□□□□ -0.69
USP48-213ENST00000529637 C11orf86A6NJI1 115 aa10.73□□□□□ -0.69
USP48-213ENST00000529637 DUSP14O95147 198 aaKnown RBP10.73□□□□□ -0.69
USP48-213ENST00000529637 ZFAND6Q6FIF0 208 aa10.73□□□□□ -0.69
USP48-213ENST00000529637 TRPT1Q86TN4 253 aaKnown RBP10.73□□□□□ -0.69
USP48-213ENST00000529637 MOB4Q9Y3A3 225 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms