RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 C3orf79P0CE67 100 aa13.98□□□□□ -0.17
VPS28-207ENST00000526977 RAB4AP20338 218 aa13.98□□□□□ -0.17
VPS28-207ENST00000526977 TDRG1Q3Y452 100 aa13.98□□□□□ -0.17
VPS28-207ENST00000526977 ANXA2RQ3ZCQ2 193 aa13.98□□□□□ -0.17
VPS28-207ENST00000526977 FOXI2Q6ZQN5 318 aa13.98□□□□□ -0.17
VPS28-207ENST00000526977 PRELID3AQ96N28 172 aa13.98□□□□□ -0.17
VPS28-207ENST00000526977 IGHV4-4A0A075B6R2 117 aa13.97□□□□□ -0.17
VPS28-207ENST00000526977 DEFB131AP59861 70 aa13.97□□□□□ -0.17
VPS28-207ENST00000526977 CTAG1AP78358 180 aa13.97□□□□□ -0.17
VPS28-207ENST00000526977 PMCHL1Q16048 86 aa13.97□□□□□ -0.17
VPS28-207ENST00000526977 COL6A5A8TX70 2615 aa13.97□□□□□ -0.17
VPS28-207ENST00000526977 CKS2P33552 79 aa13.97□□□□□ -0.17
VPS28-207ENST00000526977 MAP6D1Q9H9H5 199 aa13.97□□□□□ -0.17
VPS28-207ENST00000526977 SMKR1H3BMG3 65 aa13.96□□□□□ -0.17
VPS28-207ENST00000526977 H3BVH4 76 aa13.96□□□□□ -0.17
VPS28-207ENST00000526977 DUSP14O95147 198 aaKnown RBP13.96□□□□□ -0.17
VPS28-207ENST00000526977 LURAP1LQ8IV03 231 aa13.96□□□□□ -0.17
VPS28-207ENST00000526977 SPATA3Q8NHX4 192 aa13.96□□□□□ -0.17
VPS28-207ENST00000526977 IGHV1-24A0A0C4DH33 117 aa13.95□□□□□ -0.18
VPS28-207ENST00000526977 GNRH2O43555 120 aa13.95□□□□□ -0.18
VPS28-207ENST00000526977 CACNG7P62955 275 aa13.95□□□□□ -0.18
VPS28-207ENST00000526977 BEAN1Q3B7T3 259 aa13.95□□□□□ -0.18
VPS28-207ENST00000526977 ODF3Q96PU9 254 aa13.95□□□□□ -0.18
VPS28-207ENST00000526977 FAM110AQ9BQ89 295 aa13.95□□□□□ -0.18
VPS28-207ENST00000526977 PRSS3P2Q8NHM4 247 aa13.95□□□□□ -0.18
VPS28-207ENST00000526977 EVI2AP22794 236 aa13.94□□□□□ -0.18
VPS28-207ENST00000526977 IFI27P40305 119 aaPredicted RBP13.94□□□□□ -0.18
VPS28-207ENST00000526977 SPANXN1Q5VSR9 72 aa13.94□□□□□ -0.18
VPS28-207ENST00000526977 TIMM8BQ9Y5J9 83 aaPredicted RBP13.94□□□□□ -0.18
VPS28-207ENST00000526977 VWFP04275 2813 aa13.94□□□□□ -0.18
VPS28-207ENST00000526977 STAB1Q9NY15 2570 aa13.94□□□□□ -0.18
VPS28-207ENST00000526977 KIR2DL5BA0A0G2JN68 375 aa13.93□□□□□ -0.18
VPS28-207ENST00000526977 KIR2DL5BA0A0G2JPC4 375 aa13.93□□□□□ -0.18
VPS28-207ENST00000526977 LOC389332A0A1B0GUA5 103 aa13.93□□□□□ -0.18
VPS28-207ENST00000526977 OR11H12B2RN74 326 aa13.93□□□□□ -0.18
VPS28-207ENST00000526977 IGKV3-20P01619 116 aa13.93□□□□□ -0.18
VPS28-207ENST00000526977 LEPP41159 167 aa13.93□□□□□ -0.18
VPS28-207ENST00000526977 ASIPP42127 132 aa13.93□□□□□ -0.18
VPS28-207ENST00000526977 KIR2DL5AQ8N109 375 aa13.93□□□□□ -0.18
VPS28-207ENST00000526977 GAS8-AS1O95177 125 aa13.93□□□□□ -0.18
VPS28-207ENST00000526977 NCR2O95944 276 aa13.93□□□□□ -0.18
VPS28-207ENST00000526977 NPYP01303 97 aa13.93□□□□□ -0.18
VPS28-207ENST00000526977 S100A4P26447 101 aaKnown RBP13.93□□□□□ -0.18
VPS28-207ENST00000526977 DEFA6Q01524 100 aa13.93□□□□□ -0.18
VPS28-207ENST00000526977 ODF3L2Q3SX64 289 aa13.93□□□□□ -0.18
VPS28-207ENST00000526977 SORL1Q92673 2214 aa13.93□□□□□ -0.18
VPS28-207ENST00000526977 WIPF1O43516 503 aa13.92□□□□□ -0.18
VPS28-207ENST00000526977 SPRY2O43597 315 aa13.92□□□□□ -0.18
VPS28-207ENST00000526977 PPBPP02775 128 aa13.92□□□□□ -0.18
VPS28-207ENST00000526977 C14orf144Q96I85 54 aa13.92□□□□□ -0.18
VPS28-207ENST00000526977 SCRT2Q9NQ03 307 aa13.92□□□□□ -0.18
VPS28-207ENST00000526977 AP5S1Q9NUS5 200 aa13.92□□□□□ -0.18
VPS28-207ENST00000526977 TRAV12-3A0A0B4J271 114 aa13.91□□□□□ -0.18
VPS28-207ENST00000526977 HLA-DRB4P13762 266 aa13.91□□□□□ -0.18
VPS28-207ENST00000526977 FA2HQ7L5A8 372 aa13.91□□□□□ -0.18
VPS28-207ENST00000526977 HLA-DRB4X5D2U9 266 aa13.91□□□□□ -0.18
VPS28-207ENST00000526977 C7orf71A4D174 169 aa13.91□□□□□ -0.18
VPS28-207ENST00000526977 MED14OSP0DP75 135 aa13.91□□□□□ -0.18
VPS28-207ENST00000526977 RNASE3P12724 160 aaKnown RBP13.91□□□□□ -0.18
VPS28-207ENST00000526977 IGLL1P15814 213 aa13.91□□□□□ -0.18
VPS28-207ENST00000526977 SMIM15Q7Z3B0 74 aa13.91□□□□□ -0.18
VPS28-207ENST00000526977 H3BMM0 161 aa13.9□□□□□ -0.18
VPS28-207ENST00000526977 FAM159AQ6UWV7 190 aa13.9□□□□□ -0.18
VPS28-207ENST00000526977 LINC00173Q6ZV60 143 aa13.9□□□□□ -0.18
VPS28-207ENST00000526977 MDFIQ99750 246 aa13.9□□□□□ -0.18
VPS28-207ENST00000526977 KNCNA6PVL3 124 aa13.9□□□□□ -0.18
VPS28-207ENST00000526977 LEPROTL1O95214 131 aa13.9□□□□□ -0.18
VPS28-207ENST00000526977 BTF3P20290 206 aaKnown RBP13.9□□□□□ -0.18
VPS28-207ENST00000526977 AMTNQ6UX39 209 aa13.9□□□□□ -0.18
VPS28-207ENST00000526977 VAMP8Q9BV40 100 aa13.9□□□□□ -0.18
VPS28-207ENST00000526977 TRRAPQ9Y4A5 3859 aa13.89□□□□□ -0.19
VPS28-207ENST00000526977 TRAV12-2A0A075B6T6 113 aa13.89□□□□□ -0.19
VPS28-207ENST00000526977 CD7P09564 240 aa13.89□□□□□ -0.19
VPS28-207ENST00000526977 GATA1P15976 413 aaPredicted RBP13.89□□□□□ -0.19
VPS28-207ENST00000526977 CDKN1BP46527 198 aa13.89□□□□□ -0.19
VPS28-207ENST00000526977 CLUHP3Q96NS8 147 aa13.89□□□□□ -0.19
VPS28-207ENST00000526977 PAM16Q9Y3D7 125 aa13.89□□□□□ -0.19
VPS28-207ENST00000526977 PHLDA3Q9Y5J5 127 aa13.89□□□□□ -0.19
VPS28-207ENST00000526977 A8MTW9 85 aa13.88□□□□□ -0.19
VPS28-207ENST00000526977 M0R381 172 aa13.88□□□□□ -0.19
VPS28-207ENST00000526977 TSPOP30536 169 aa13.88□□□□□ -0.19
VPS28-207ENST00000526977 SPINK13Q1W4C9 94 aa13.88□□□□□ -0.19
VPS28-207ENST00000526977 C20orf144Q9BQM9 153 aa13.88□□□□□ -0.19
VPS28-207ENST00000526977 NDUFAF3Q9BU61 184 aa13.88□□□□□ -0.19
VPS28-207ENST00000526977 TNFRSF6BO95407 300 aa13.88□□□□□ -0.19
VPS28-207ENST00000526977 ZNF124Q15973 351 aa13.88□□□□□ -0.19
VPS28-207ENST00000526977 GTSCR1Q86UQ5 136 aa13.88□□□□□ -0.19
VPS28-207ENST00000526977 LAMTOR2Q9Y2Q5 125 aa13.88□□□□□ -0.19
VPS28-207ENST00000526977 AGRNO00468 2067 aa13.87□□□□□ -0.19
VPS28-207ENST00000526977 SPATA12Q7Z6I5 190 aa13.87□□□□□ -0.19
VPS28-207ENST00000526977 C19orf73Q9NVV2 129 aa13.87□□□□□ -0.19
VPS28-207ENST00000526977 NOTCH3Q9UM47 2321 aa13.87□□□□□ -0.19
VPS28-207ENST00000526977 STHQ8IWL8 128 aa13.86□□□□□ -0.19
VPS28-207ENST00000526977 TMEM70Q9BUB7 260 aa13.86□□□□□ -0.19
VPS28-207ENST00000526977 CRXO43186 299 aaPredicted RBP13.86□□□□□ -0.19
VPS28-207ENST00000526977 MAP1LC3AQ9H492 121 aa13.86□□□□□ -0.19
VPS28-207ENST00000526977 A0A096LNJ9 63 aa13.85□□□□□ -0.19
VPS28-207ENST00000526977 TRAV26-2A0A0B4J265 109 aa13.85□□□□□ -0.19
VPS28-207ENST00000526977 RIPPLY3P57055 190 aa13.85□□□□□ -0.19
VPS28-207ENST00000526977 HSPB8Q9UJY1 196 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 102.6 ms