RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 C2orf82Q6UX34 121 aa3□□□□□ -1.93
USP47-204ENST00000525078 CASC2Q6XLA1 102 aa3□□□□□ -1.93
USP47-204ENST00000525078 C8orf59Q8N0T1 100 aaPredicted RBP3□□□□□ -1.93
USP47-204ENST00000525078 C9orf163Q8N9P6 203 aa3□□□□□ -1.93
USP47-204ENST00000525078 PSMF1Q92530 271 aa3□□□□□ -1.93
USP47-204ENST00000525078 TIMM21Q9BVV7 248 aa3□□□□□ -1.93
USP47-204ENST00000525078 SEC11CQ9BY50 192 aa3□□□□□ -1.93
USP47-204ENST00000525078 ZFP30Q9Y2G7 519 aa3□□□□□ -1.93
USP47-204ENST00000525078 NOP16Q9Y3C1 178 aaKnown RBP3□□□□□ -1.93
USP47-204ENST00000525078 COL16A1Q07092 1604 aaPredicted RBP3□□□□□ -1.93
USP47-204ENST00000525078 CCDC88CQ9P219 2028 aa3□□□□□ -1.93
USP47-204ENST00000525078 CUL9Q8IWT3 2517 aa2.99□□□□□ -1.93
USP47-204ENST00000525078 KIAA2026Q5HYC2 2103 aa2.99□□□□□ -1.93
USP47-204ENST00000525078 MYH6P13533 1939 aa2.99□□□□□ -1.93
USP47-204ENST00000525078 TRAV12-1A0A0B4J245 112 aa2.99□□□□□ -1.93
USP47-204ENST00000525078 TMEM218A2RU14 115 aa2.99□□□□□ -1.93
USP47-204ENST00000525078 IFITM5A6NNB3 132 aa2.99□□□□□ -1.93
USP47-204ENST00000525078 ELOBQ15370 118 aa2.99□□□□□ -1.93
USP47-204ENST00000525078 MIC13Q5XKP0 118 aa2.99□□□□□ -1.93
USP47-204ENST00000525078 IGFL1Q6UW32 110 aa2.99□□□□□ -1.93
USP47-204ENST00000525078 TEX261Q6UWH6 196 aa2.99□□□□□ -1.93
USP47-204ENST00000525078 NAA60Q9H7X0 242 aa2.99□□□□□ -1.93
USP47-204ENST00000525078 LRP6O75581 1613 aa2.99□□□□□ -1.93
USP47-204ENST00000525078 MYH8P13535 1937 aa2.99□□□□□ -1.93
USP47-204ENST00000525078 NWD2Q9ULI1 1742 aa2.99□□□□□ -1.93
USP47-204ENST00000525078 NCKAP5O14513 1909 aa2.98□□□□□ -1.93
USP47-204ENST00000525078 A0A0G2JQZ4 141 aa2.98□□□□□ -1.93
USP47-204ENST00000525078 KRTAP5-4Q6L8H1 288 aa2.98□□□□□ -1.93
USP47-204ENST00000525078 Q8N2B8 174 aa2.98□□□□□ -1.93
USP47-204ENST00000525078 FAM19A2Q8N3H0 131 aa2.98□□□□□ -1.93
USP47-204ENST00000525078 ATP6V0E2Q8NHE4 81 aa2.98□□□□□ -1.93
USP47-204ENST00000525078 TVP23CQ96ET8 276 aa2.98□□□□□ -1.93
USP47-204ENST00000525078 KRTAP4-4Q9BYR3 166 aa2.98□□□□□ -1.93
USP47-204ENST00000525078 ARAP2Q8WZ64 1704 aa2.98□□□□□ -1.93
USP47-204ENST00000525078 AFDNP55196 1824 aaKnown RBP2.98□□□□□ -1.93
USP47-204ENST00000525078 DLEC1Q9Y238 1755 aa2.97□□□□□ -1.93
USP47-204ENST00000525078 ARFGEF2Q9Y6D5 1785 aa2.97□□□□□ -1.93
USP47-204ENST00000525078 PLXNA3P51805 1871 aa2.97□□□□□ -1.93
USP47-204ENST00000525078 SDHAF1A6NFY7 115 aa2.97□□□□□ -1.93
USP47-204ENST00000525078 J3QLW9 94 aa2.97□□□□□ -1.93
USP47-204ENST00000525078 GNGT1P63211 74 aa2.97□□□□□ -1.93
USP47-204ENST00000525078 ATP11AUNQ6ZP68 121 aa2.97□□□□□ -1.93
USP47-204ENST00000525078 C3orf62Q6ZUJ4 267 aa2.97□□□□□ -1.93
USP47-204ENST00000525078 GKN2Q86XP6 184 aa2.97□□□□□ -1.93
USP47-204ENST00000525078 ACBD7Q8N6N7 88 aa2.97□□□□□ -1.93
USP47-204ENST00000525078 AGPAT4-IT1Q9H0P7 198 aa2.97□□□□□ -1.93
USP47-204ENST00000525078 DOCK2Q92608 1830 aa2.97□□□□□ -1.93
USP47-204ENST00000525078 MYH1P12882 1939 aa2.97□□□□□ -1.93
USP47-204ENST00000525078 LTN1O94822 1766 aa2.97□□□□□ -1.93
USP47-204ENST00000525078 NUP188Q5SRE5 1749 aa2.96□□□□□ -1.93
USP47-204ENST00000525078 GLI3P10071 1580 aa2.96□□□□□ -1.94
USP47-204ENST00000525078 DIP2BQ9P265 1576 aa2.96□□□□□ -1.94
USP47-204ENST00000525078 WNK3Q9BYP7 1800 aa2.96□□□□□ -1.94
USP47-204ENST00000525078 ZNF609O15014 1411 aa2.96□□□□□ -1.94
USP47-204ENST00000525078 PLCH1Q4KWH8 1693 aa2.96□□□□□ -1.94
USP47-204ENST00000525078 A0A087WSZ3 146 aa2.96□□□□□ -1.94
USP47-204ENST00000525078 TRAV14DV4A0A0A6YYC5 116 aa2.96□□□□□ -1.94
USP47-204ENST00000525078 C2orf70A6NJV1 201 aa2.96□□□□□ -1.94
USP47-204ENST00000525078 A6NN06 94 aa2.96□□□□□ -1.94
USP47-204ENST00000525078 KLF7O75840 302 aaPredicted RBP2.96□□□□□ -1.94
USP47-204ENST00000525078 CXCL8P10145 99 aa2.96□□□□□ -1.94
USP47-204ENST00000525078 BRS3P32247 399 aa2.96□□□□□ -1.94
USP47-204ENST00000525078 MRPL54Q6P161 138 aaKnown RBP2.96□□□□□ -1.94
USP47-204ENST00000525078 LINC00269Q8N2A0 174 aa2.96□□□□□ -1.94
USP47-204ENST00000525078 ZNF431Q8TF32 576 aaPredicted RBP2.96□□□□□ -1.94
USP47-204ENST00000525078 SPANXDQ9BXN6 97 aa2.96□□□□□ -1.94
USP47-204ENST00000525078 TAS2R8Q9NYW2 309 aa2.96□□□□□ -1.94
USP47-204ENST00000525078 ANKRD36CQ5JPF3 1778 aa2.96□□□□□ -1.94
USP47-204ENST00000525078 SCN11AQ9UI33 1791 aa2.96□□□□□ -1.94
USP47-204ENST00000525078 LRP5O75197 1615 aa2.96□□□□□ -1.94
USP47-204ENST00000525078 MYH9P35579 1960 aaKnown RBP2.96□□□□□ -1.94
USP47-204ENST00000525078 KIF13AQ9H1H9 1805 aa2.96□□□□□ -1.94
USP47-204ENST00000525078 C5P01031 1676 aa2.95□□□□□ -1.94
USP47-204ENST00000525078 ALS2Q96Q42 1657 aa2.95□□□□□ -1.94
USP47-204ENST00000525078 LAMB1P07942 1786 aa2.95□□□□□ -1.94
USP47-204ENST00000525078 MGAMO43451 1857 aa2.95□□□□□ -1.94
USP47-204ENST00000525078 A0A0D9SFI3 127 aa2.95□□□□□ -1.94
USP47-204ENST00000525078 M0R143 59 aa2.95□□□□□ -1.94
USP47-204ENST00000525078 IFNA17P01571 189 aa2.95□□□□□ -1.94
USP47-204ENST00000525078 CATR1Q13166 79 aa2.95□□□□□ -1.94
USP47-204ENST00000525078 Q56UQ5 140 aa2.95□□□□□ -1.94
USP47-204ENST00000525078 MRPL57Q9BQC6 102 aaKnown RBP2.95□□□□□ -1.94
USP47-204ENST00000525078 PKD1L3Q7Z443 1732 aa2.95□□□□□ -1.94
USP47-204ENST00000525078 UBR1Q8IWV7 1749 aa2.95□□□□□ -1.94
USP47-204ENST00000525078 TOGARAM1Q9Y4F4 1720 aa2.95□□□□□ -1.94
USP47-204ENST00000525078 PITX3O75364 302 aa2.94□□□□□ -1.94
USP47-204ENST00000525078 TNFP01375 233 aa2.94□□□□□ -1.94
USP47-204ENST00000525078 PLPP5Q8NEB5 264 aa2.94□□□□□ -1.94
USP47-204ENST00000525078 IER3IP1Q9Y5U9 82 aa2.94□□□□□ -1.94
USP47-204ENST00000525078 SERP1Q9Y6X1 66 aa2.94□□□□□ -1.94
USP47-204ENST00000525078 BCORQ6W2J9 1755 aa2.94□□□□□ -1.94
USP47-204ENST00000525078 PAPPAQ13219 1627 aa2.93□□□□□ -1.94
USP47-204ENST00000525078 MYLKQ15746 1914 aa2.93□□□□□ -1.94
USP47-204ENST00000525078 TRAV30A0A087WSZ9 112 aa2.93□□□□□ -1.94
USP47-204ENST00000525078 APOC4-APOC2K7ER74 178 aa2.93□□□□□ -1.94
USP47-204ENST00000525078 CCL25O15444 150 aa2.93□□□□□ -1.94
USP47-204ENST00000525078 APOC2P02655 101 aa2.93□□□□□ -1.94
USP47-204ENST00000525078 IL5P05113 134 aa2.93□□□□□ -1.94
USP47-204ENST00000525078 GNG2P59768 71 aa2.93□□□□□ -1.94
USP47-204ENST00000525078 HSD52Q0P140 79 aa2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms