RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 IL17DQ8TAD2 202 aa7.86□□□□□ -1.15
PDGFRB-207ENST00000520579 TRGV9Q99603 122 aa7.86□□□□□ -1.15
PDGFRB-207ENST00000520579 DYNLRB1Q9NP97 96 aa7.86□□□□□ -1.15
PDGFRB-207ENST00000520579 TRAV41A0A0B4J266 112 aa7.85□□□□□ -1.15
PDGFRB-207ENST00000520579 C1orf195Q5TG92 126 aa7.85□□□□□ -1.15
PDGFRB-207ENST00000520579 DTX2Q86UW9 622 aa7.85□□□□□ -1.15
PDGFRB-207ENST00000520579 ARRDC1-AS1Q9H2J1 176 aa7.85□□□□□ -1.15
PDGFRB-207ENST00000520579 FDCSPQ8NFU4 85 aa7.85□□□□□ -1.15
PDGFRB-207ENST00000520579 MUC6Q6W4X9 2439 aa7.85□□□□□ -1.15
PDGFRB-207ENST00000520579 TLN1Q9Y490 2541 aaKnown RBP7.85□□□□□ -1.15
PDGFRB-207ENST00000520579 A0A1W2PNU3 283 aaPredicted RBP7.85□□□□□ -1.15
PDGFRB-207ENST00000520579 C10orf105Q8TEF2 133 aa7.85□□□□□ -1.15
PDGFRB-207ENST00000520579 PRO0628Q9UI54 55 aa7.85□□□□□ -1.15
PDGFRB-207ENST00000520579 LINC00527Q9UJ94 153 aa7.85□□□□□ -1.15
PDGFRB-207ENST00000520579 RELNP78509 3460 aa7.84□□□□□ -1.15
PDGFRB-207ENST00000520579 ATRXP46100 2492 aa7.84□□□□□ -1.15
PDGFRB-207ENST00000520579 HIGD1BQ9P298 99 aa7.84□□□□□ -1.15
PDGFRB-207ENST00000520579 LY6HO94772 140 aa7.84□□□□□ -1.15
PDGFRB-207ENST00000520579 TMEM170BQ5T4T1 132 aa7.84□□□□□ -1.15
PDGFRB-207ENST00000520579 IGLV2-23P01705 113 aa7.84□□□□□ -1.15
PDGFRB-207ENST00000520579 S100A4P26447 101 aaKnown RBP7.84□□□□□ -1.15
PDGFRB-207ENST00000520579 PRSS33Q8NF86 280 aa7.84□□□□□ -1.15
PDGFRB-207ENST00000520579 RPL11P62913 178 aaKnown RBP7.83□□□□□ -1.16
PDGFRB-207ENST00000520579 KLRB1Q12918 225 aa7.83□□□□□ -1.16
PDGFRB-207ENST00000520579 ZNF833PQ6ZTB9 187 aa7.83□□□□□ -1.16
PDGFRB-207ENST00000520579 UQCRQO14949 82 aa7.83□□□□□ -1.16
PDGFRB-207ENST00000520579 TCL1BO95988 128 aa7.83□□□□□ -1.16
PDGFRB-207ENST00000520579 MBD3L2Q8NHZ7 208 aaPredicted RBP7.83□□□□□ -1.16
PDGFRB-207ENST00000520579 PRR25Q96S07 402 aa7.83□□□□□ -1.16
PDGFRB-207ENST00000520579 ANKHD1Q8IWZ3 2542 aaKnown RBP7.83□□□□□ -1.16
PDGFRB-207ENST00000520579 MYMXA0A1B0GTQ4 84 aa7.83□□□□□ -1.16
PDGFRB-207ENST00000520579 DLX6P56179 175 aa7.83□□□□□ -1.16
PDGFRB-207ENST00000520579 DEFB109BQ30KR1 87 aa7.83□□□□□ -1.16
PDGFRB-207ENST00000520579 CUBNO60494 3623 aa7.83□□□□□ -1.16
PDGFRB-207ENST00000520579 CEP295Q9C0D2 2601 aa7.82□□□□□ -1.16
PDGFRB-207ENST00000520579 ADARB2-AS1A8MUL3 147 aa7.82□□□□□ -1.16
PDGFRB-207ENST00000520579 MALP21145 153 aa7.82□□□□□ -1.16
PDGFRB-207ENST00000520579 OR11H6Q8NGC7 330 aa7.82□□□□□ -1.16
PDGFRB-207ENST00000520579 BRK1Q8WUW1 75 aa7.82□□□□□ -1.16
PDGFRB-207ENST00000520579 PCSK5Q92824 1860 aa7.82□□□□□ -1.16
PDGFRB-207ENST00000520579 MORN3Q6PF18 240 aaPredicted RBP7.82□□□□□ -1.16
PDGFRB-207ENST00000520579 Q8N1Y9 231 aa7.82□□□□□ -1.16
PDGFRB-207ENST00000520579 SHANK2-AS3Q9BTD1 123 aa7.82□□□□□ -1.16
PDGFRB-207ENST00000520579 ZNF71Q9NQZ8 489 aaPredicted RBP7.82□□□□□ -1.16
PDGFRB-207ENST00000520579 TEX49A0A1B0GTD5 131 aa7.82□□□□□ -1.16
PDGFRB-207ENST00000520579 PRSS2P07478 247 aa7.82□□□□□ -1.16
PDGFRB-207ENST00000520579 Q6Q795 121 aa7.82□□□□□ -1.16
PDGFRB-207ENST00000520579 DYNAPQ8N1N2 210 aa7.82□□□□□ -1.16
PDGFRB-207ENST00000520579 MDS2Q8NDY4 140 aa7.82□□□□□ -1.16
PDGFRB-207ENST00000520579 RPL39LQ96EH5 51 aaKnown RBP7.82□□□□□ -1.16
PDGFRB-207ENST00000520579 A0A1B0GX51 115 aa7.81□□□□□ -1.16
PDGFRB-207ENST00000520579 F5H697 171 aa7.81□□□□□ -1.16
PDGFRB-207ENST00000520579 CRIP2P52943 208 aaPredicted RBP7.81□□□□□ -1.16
PDGFRB-207ENST00000520579 NDPQ00604 133 aa7.81□□□□□ -1.16
PDGFRB-207ENST00000520579 LAGE3Q14657 143 aa7.81□□□□□ -1.16
PDGFRB-207ENST00000520579 C14orf178Q8N769 122 aaPredicted RBP7.81□□□□□ -1.16
PDGFRB-207ENST00000520579 ZNF491Q8N8L2 437 aa7.81□□□□□ -1.16
PDGFRB-207ENST00000520579 SLC25A15Q9Y619 301 aa7.81□□□□□ -1.16
PDGFRB-207ENST00000520579 ANKRD11Q6UB99 2663 aaPredicted RBP7.81□□□□□ -1.16
PDGFRB-207ENST00000520579 CEMP1Q6PRD7 247 aaPredicted RBP7.81□□□□□ -1.16
PDGFRB-207ENST00000520579 RNF185Q96GF1 192 aa7.81□□□□□ -1.16
PDGFRB-207ENST00000520579 CSPG4Q6UVK1 2322 aa7.81□□□□□ -1.16
PDGFRB-207ENST00000520579 A0A0U1RRA0 63 aa7.81□□□□□ -1.16
PDGFRB-207ENST00000520579 LINC00336Q6ZUF6 198 aa7.81□□□□□ -1.16
PDGFRB-207ENST00000520579 TNRC6BQ9UPQ9 1833 aaKnown RBP7.81□□□□□ -1.16
PDGFRB-207ENST00000520579 TRAV13-1A0A0B4J241 112 aa7.8□□□□□ -1.16
PDGFRB-207ENST00000520579 LGALS1P09382 135 aaKnown RBP7.8□□□□□ -1.16
PDGFRB-207ENST00000520579 RPL13AP40429 203 aaKnown RBP7.8□□□□□ -1.16
PDGFRB-207ENST00000520579 ECSCRQ19T08 205 aa7.8□□□□□ -1.16
PDGFRB-207ENST00000520579 NSUN5P1Q3KNT7 163 aa7.8□□□□□ -1.16
PDGFRB-207ENST00000520579 GFRALQ6UXV0 394 aa7.8□□□□□ -1.16
PDGFRB-207ENST00000520579 TIMM23O14925 209 aa7.8□□□□□ -1.16
PDGFRB-207ENST00000520579 PFN2P35080 140 aa7.8□□□□□ -1.16
PDGFRB-207ENST00000520579 OVOL3O00110 214 aa7.79□□□□□ -1.16
PDGFRB-207ENST00000520579 LHBP01229 141 aa7.79□□□□□ -1.16
PDGFRB-207ENST00000520579 Q6ZS46 218 aa7.79□□□□□ -1.16
PDGFRB-207ENST00000520579 RAI1Q7Z5J4 1906 aaPredicted RBP7.79□□□□□ -1.16
PDGFRB-207ENST00000520579 SONP18583 2426 aaKnown RBP7.79□□□□□ -1.16
PDGFRB-207ENST00000520579 IGF1P05019 195 aa7.78□□□□□ -1.16
PDGFRB-207ENST00000520579 TCF15Q12870 199 aa7.78□□□□□ -1.16
PDGFRB-207ENST00000520579 H3BRN7 92 aa7.78□□□□□ -1.16
PDGFRB-207ENST00000520579 K7EIM0 57 aa7.78□□□□□ -1.16
PDGFRB-207ENST00000520579 FAM74A4Q5TZK3 123 aa7.78□□□□□ -1.16
PDGFRB-207ENST00000520579 SETD2Q9BYW2 2564 aaPredicted RBP7.78□□□□□ -1.16
PDGFRB-207ENST00000520579 IGHV1-3A0A0C4DH29 117 aa7.78□□□□□ -1.16
PDGFRB-207ENST00000520579 IGHV1-8P0DP01 117 aa7.78□□□□□ -1.16
PDGFRB-207ENST00000520579 ODF3Q96PU9 254 aa7.78□□□□□ -1.16
PDGFRB-207ENST00000520579 TRAV12-3A0A0B4J271 114 aa7.78□□□□□ -1.16
PDGFRB-207ENST00000520579 TEX36Q5VZQ5 186 aa7.78□□□□□ -1.16
PDGFRB-207ENST00000520579 C11orf21Q9P2W6 132 aa7.78□□□□□ -1.16
PDGFRB-207ENST00000520579 PYGO1Q9Y3Y4 419 aa7.78□□□□□ -1.16
PDGFRB-207ENST00000520579 WNK1Q9H4A3 2382 aa7.77□□□□□ -1.16
PDGFRB-207ENST00000520579 PTPRQQ9UMZ3 2332 aa7.77□□□□□ -1.17
PDGFRB-207ENST00000520579 TEX22C9J3V5 150 aa7.77□□□□□ -1.17
PDGFRB-207ENST00000520579 H7C1H1 209 aa7.77□□□□□ -1.17
PDGFRB-207ENST00000520579 I3L2K1 104 aa7.77□□□□□ -1.17
PDGFRB-207ENST00000520579 PIP4P1Q86T03 277 aa7.77□□□□□ -1.17
PDGFRB-207ENST00000520579 Q8N8P6 123 aa7.77□□□□□ -1.17
PDGFRB-207ENST00000520579 ZNRF2Q8NHG8 242 aa7.77□□□□□ -1.17
PDGFRB-207ENST00000520579 TRBV7-3A0A075B6L6 115 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms