RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 PRTFDC1Q9NRG1 225 aa4.42□□□□□ -1.7
LSM1-202ENST00000520286 NAT8BQ9UHF3 227 aa4.42□□□□□ -1.7
LSM1-202ENST00000520286 KLF13Q9Y2Y9 288 aaPredicted RBP4.42□□□□□ -1.7
LSM1-202ENST00000520286 CSMD1Q96PZ7 3565 aa4.42□□□□□ -1.7
LSM1-202ENST00000520286 PDZD2O15018 2839 aa4.42□□□□□ -1.7
LSM1-202ENST00000520286 CACNA1CQ13936 2221 aa4.42□□□□□ -1.7
LSM1-202ENST00000520286 BSNQ9UPA5 3926 aa4.41□□□□□ -1.7
LSM1-202ENST00000520286 CENPEQ02224 2701 aa4.41□□□□□ -1.7
LSM1-202ENST00000520286 IGKV2-28A0A075B6P5 120 aa4.41□□□□□ -1.7
LSM1-202ENST00000520286 IGKV1-6A0A0C4DH72 117 aa4.41□□□□□ -1.7
LSM1-202ENST00000520286 IGKV1-12A0A0C4DH73 117 aa4.41□□□□□ -1.7
LSM1-202ENST00000520286 A0A0G2JMM0 328 aa4.41□□□□□ -1.7
LSM1-202ENST00000520286 A0A0J9YY10 115 aa4.41□□□□□ -1.7
LSM1-202ENST00000520286 A0A1W2PPB8 328 aa4.41□□□□□ -1.7
LSM1-202ENST00000520286 C7orf71A4D174 169 aa4.41□□□□□ -1.7
LSM1-202ENST00000520286 OR4C46A6NHA9 309 aa4.41□□□□□ -1.7
LSM1-202ENST00000520286 CD300LBA8K4G0 201 aa4.41□□□□□ -1.7
LSM1-202ENST00000520286 KIR3DP1A8MWS1 328 aa4.41□□□□□ -1.7
LSM1-202ENST00000520286 SLC17A3O00476 420 aa4.41□□□□□ -1.7
LSM1-202ENST00000520286 IGKV1D-12P01611 117 aa4.41□□□□□ -1.7
LSM1-202ENST00000520286 IGKV2D-28P01615 120 aa4.41□□□□□ -1.7
LSM1-202ENST00000520286 IGKV3-11P04433 115 aa4.41□□□□□ -1.7
LSM1-202ENST00000520286 IAPPP10997 89 aa4.41□□□□□ -1.7
LSM1-202ENST00000520286 ZNF32P17041 273 aa4.41□□□□□ -1.7
LSM1-202ENST00000520286 SRIP30626 198 aa4.41□□□□□ -1.7
LSM1-202ENST00000520286 GUCA1AP43080 201 aaPredicted RBP4.41□□□□□ -1.7
LSM1-202ENST00000520286 FAM162BQ5T6X4 162 aa4.41□□□□□ -1.7
LSM1-202ENST00000520286 FAM231DQ6ZW35 169 aa4.41□□□□□ -1.7
LSM1-202ENST00000520286 S100A7AQ86SG5 101 aa4.41□□□□□ -1.7
LSM1-202ENST00000520286 OSR2Q8N2R0 312 aa4.41□□□□□ -1.7
LSM1-202ENST00000520286 MRAP2Q96G30 205 aa4.41□□□□□ -1.7
LSM1-202ENST00000520286 TMEM70Q9BUB7 260 aa4.41□□□□□ -1.7
LSM1-202ENST00000520286 MED29Q9NX70 200 aa4.41□□□□□ -1.7
LSM1-202ENST00000520286 INSIG2Q9Y5U4 225 aa4.41□□□□□ -1.7
LSM1-202ENST00000520286 ZFHX3Q15911 3703 aa4.41□□□□□ -1.7
LSM1-202ENST00000520286 MED13Q9UHV7 2174 aa4.41□□□□□ -1.7
LSM1-202ENST00000520286 PCNX1Q96RV3 2341 aa4.4□□□□□ -1.7
LSM1-202ENST00000520286 KIR2DS1A0A191URI9 304 aa4.4□□□□□ -1.71
LSM1-202ENST00000520286 IZUMO1RA6ND01 250 aa4.4□□□□□ -1.71
LSM1-202ENST00000520286 OR11H12B2RN74 326 aa4.4□□□□□ -1.71
LSM1-202ENST00000520286 UPK2O00526 184 aa4.4□□□□□ -1.71
LSM1-202ENST00000520286 ISLRO14498 428 aa4.4□□□□□ -1.71
LSM1-202ENST00000520286 RER1O15258 196 aa4.4□□□□□ -1.71
LSM1-202ENST00000520286 HMGB3O15347 200 aaKnown RBP4.4□□□□□ -1.71
LSM1-202ENST00000520286 COX8AP10176 69 aa4.4□□□□□ -1.71
LSM1-202ENST00000520286 S100GP29377 79 aa4.4□□□□□ -1.71
LSM1-202ENST00000520286 CKS1BP61024 79 aa4.4□□□□□ -1.71
LSM1-202ENST00000520286 TFF3Q07654 80 aa4.4□□□□□ -1.71
LSM1-202ENST00000520286 RAB31Q13636 194 aa4.4□□□□□ -1.71
LSM1-202ENST00000520286 CEACAM21Q3KPI0 293 aa4.4□□□□□ -1.71
LSM1-202ENST00000520286 PIGYQ3MUY2 71 aa4.4□□□□□ -1.71
LSM1-202ENST00000520286 Q56UQ5 140 aa4.4□□□□□ -1.71
LSM1-202ENST00000520286 C10orf128Q5T292 105 aa4.4□□□□□ -1.71
LSM1-202ENST00000520286 UNQ9165/PRO28630Q6UXU0 137 aa4.4□□□□□ -1.71
LSM1-202ENST00000520286 OR8I2Q8N0Y5 310 aa4.4□□□□□ -1.71
LSM1-202ENST00000520286 FAM19A2Q8N3H0 131 aa4.4□□□□□ -1.71
LSM1-202ENST00000520286 SPANXA2-OT1Q8N9U9 137 aa4.4□□□□□ -1.71
LSM1-202ENST00000520286 OR11H1Q8NG94 326 aa4.4□□□□□ -1.71
LSM1-202ENST00000520286 OR2K2Q8NGT1 345 aa4.4□□□□□ -1.71
LSM1-202ENST00000520286 OR11H2Q8NH07 326 aa4.4□□□□□ -1.71
LSM1-202ENST00000520286 TMEM191AQ9H0A3 160 aa4.4□□□□□ -1.71
LSM1-202ENST00000520286 SND1-IT1Q9HBX3 110 aa4.4□□□□□ -1.71
LSM1-202ENST00000520286 TP73-AS1Q9UF72 201 aa4.4□□□□□ -1.71
LSM1-202ENST00000520286 SHANK1Q9Y566 2161 aa4.4□□□□□ -1.71
LSM1-202ENST00000520286 IGKV3D-11A0A0A0MRZ8 115 aa4.39□□□□□ -1.71
LSM1-202ENST00000520286 LOC389332A0A1B0GUA5 103 aa4.39□□□□□ -1.71
LSM1-202ENST00000520286 C17orf51A8MQB3 221 aa4.39□□□□□ -1.71
LSM1-202ENST00000520286 C21orf140B9A014 251 aa4.39□□□□□ -1.71
LSM1-202ENST00000520286 KLRC4-KLRK1H3BQV0 150 aa4.39□□□□□ -1.71
LSM1-202ENST00000520286 SYS1-DBNDD2H3BUS1 97 aa4.39□□□□□ -1.71
LSM1-202ENST00000520286 M0R2Z0 102 aa4.39□□□□□ -1.71
LSM1-202ENST00000520286 OR7C1O76099 320 aaPredicted RBP4.39□□□□□ -1.71
LSM1-202ENST00000520286 CXorf1O96002 111 aa4.39□□□□□ -1.71
LSM1-202ENST00000520286 CD28P10747 220 aa4.39□□□□□ -1.71
LSM1-202ENST00000520286 FGF6P10767 208 aa4.39□□□□□ -1.71
LSM1-202ENST00000520286 NTF3P20783 257 aa4.39□□□□□ -1.71
LSM1-202ENST00000520286 CRYGSP22914 178 aa4.39□□□□□ -1.71
LSM1-202ENST00000520286 KRTAP12-2P59991 146 aa4.39□□□□□ -1.71
LSM1-202ENST00000520286 TMEM97Q5BJF2 176 aa4.39□□□□□ -1.71
LSM1-202ENST00000520286 SPANXN5Q5MJ07 72 aa4.39□□□□□ -1.71
LSM1-202ENST00000520286 MORN3Q6PF18 240 aaPredicted RBP4.39□□□□□ -1.71
LSM1-202ENST00000520286 FA2HQ7L5A8 372 aa4.39□□□□□ -1.71
LSM1-202ENST00000520286 VSTM2AQ8TAG5 236 aa4.39□□□□□ -1.71
LSM1-202ENST00000520286 FAM57AQ8TBR7 257 aa4.39□□□□□ -1.71
LSM1-202ENST00000520286 CT55Q8WUE5 264 aa4.39□□□□□ -1.71
LSM1-202ENST00000520286 CHCHD1Q96BP2 118 aaKnown RBP4.39□□□□□ -1.71
LSM1-202ENST00000520286 LINC00470Q9BZP3 86 aa4.39□□□□□ -1.71
LSM1-202ENST00000520286 SVILO95425 2214 aa4.39□□□□□ -1.71
LSM1-202ENST00000520286 MTORP42345 2549 aa4.39□□□□□ -1.71
LSM1-202ENST00000520286 A0A1W2PPM0 123 aa4.38□□□□□ -1.71
LSM1-202ENST00000520286 M0QXV9 152 aa4.38□□□□□ -1.71
LSM1-202ENST00000520286 HBZP02008 142 aa4.38□□□□□ -1.71
LSM1-202ENST00000520286 SCTP09683 121 aa4.38□□□□□ -1.71
LSM1-202ENST00000520286 GCHFRP30047 84 aa4.38□□□□□ -1.71
LSM1-202ENST00000520286 LINC00315P59091 139 aa4.38□□□□□ -1.71
LSM1-202ENST00000520286 SMAGPQ0VAQ4 97 aa4.38□□□□□ -1.71
LSM1-202ENST00000520286 LINC01545Q5VT33 79 aa4.38□□□□□ -1.71
LSM1-202ENST00000520286 MYO7BQ6PIF6 2116 aa4.38□□□□□ -1.71
LSM1-202ENST00000520286 OR10AG1Q8NH19 301 aa4.38□□□□□ -1.71
LSM1-202ENST00000520286 OR4A5Q8NH83 315 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms