RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 UBE2G1P62253 170 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 CCL8P80075 99 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 PDE6HQ13956 83 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 INSL4Q14641 139 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 RHOHQ15669 191 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 Q1T7F1 81 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 DEFB113Q30KQ7 82 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 ZNF791Q3KP31 576 aaPredicted RBP0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 DEFB134Q4QY38 66 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 PYDC2Q56P42 97 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 C9orf116Q5BN46 136 aaPredicted RBP0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 C1orf137Q5JT78 98 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 C1orf134Q5TEV5 83 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 RPL7L1Q6DKI1 246 aaKnown RBP0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 SLC48A1Q6P1K1 146 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 KRTAP26-1Q6PEX3 210 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 UNQ5815/PRO19632Q6UWF5 114 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 ZCCHC23Q6ZST2 131 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 Q6ZTI0 123 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 FP248Q71RG6 208 aaPredicted RBP0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 COMMD6Q7Z4G1 85 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 KRTAP11-1Q8IUC1 163 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 ARL17AQ8IVW1 177 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 Q8N8P6 123 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 OR10AG1Q8NH19 301 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 Q8TAT8 98 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 DMAC1Q96GE9 116 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 TMEM141Q96I45 108 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 MGST2Q99735 147 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 REG4Q9BYZ8 158 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 CYP4F30PQ9H0H9 118 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 DPH3P1Q9H4G8 78 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 MED9Q9NWA0 146 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 BET1LQ9NYM9 111 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 MRPL35Q9NZE8 188 aaKnown RBP0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 ORMDL1Q9P0S3 153 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 PRO2289Q9P1D8 64 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 NDUFA12Q9UI09 145 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 RABAC1Q9UI14 185 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 C22orf24Q9Y442 160 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 LRRC37A3O60309 1634 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 LRP5O75197 1615 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 TOP2BQ02880 1626 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 KIF14Q15058 1648 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 PTPN23Q9H3S7 1636 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 MYH9P35579 1960 aaKnown RBP0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 EML6Q6ZMW3 1958 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 ATP10BO94823 1461 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 POLA1P09884 1462 aaPredicted RBP0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 LRRC9Q6ZRR7 1453 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 NLRP1Q9C000 1473 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 CDK12Q9NYV4 1490 aaPredicted RBP0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 NRXN1Q9ULB1 1477 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 SHANK2Q9UPX8 1470 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 SBF2Q86WG5 1849 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 KIF20BQ96Q89 1820 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 WNK3Q9BYP7 1800 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 SCN1AP35498 2009 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 CCDC88CQ9P219 2028 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 TET3O43151 1660 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 COL4A5P29400 1685 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 ZNF142P52746 1687 aaPredicted RBP0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 CLTCQ00610 1675 aaKnown RBP0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 PLXNA2O75051 1894 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 CPAMD8Q8IZJ3 1885 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 MYO5AQ9Y4I1 1855 aaKnown RBP0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 MYO16Q9Y6X6 1858 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 ADGRB3O60242 1522 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 ATG2BQ96BY7 2078 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 MYO10Q9HD67 2058 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 COL4A2P08572 1712 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 SUPT6HQ7KZ85 1726 aaKnown RBP0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 MON2Q7Z3U7 1717 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 ARAP2Q8WZ64 1704 aa0.33□□□□□ -2.36
RNU4-54P-201ENST00000516428 MYH6P13533 1939 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 ALPK3Q96L96 1907 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 PLIN4Q96Q06 1357 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 GTF3C1Q12789 2109 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 ABCA8O94911 1581 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 ADAMTS12P58397 1594 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 THOC2Q8NI27 1593 aaKnown RBP0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 DIP2BQ9P265 1576 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 CASZ1Q86V15 1759 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 ARHGAP21Q5T5U3 1957 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 COL11A1P12107 1806 aaPredicted RBP0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 NUP205Q92621 2012 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 SVILO95425 2214 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 IGLV3-32A0A0A0MS00 114 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 TRAV13-2A0A0B4J235 113 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 TRAV12-3A0A0B4J271 114 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 TRAV17A0A0B4J275 112 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 A0A0J9YY99 117 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 CXorf51AA0A1B0GTR3 108 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 SMIM31A0A1B0GVY4 71 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 TRBV6-4A0A1B0GX49 114 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 TMEM30CPA0ZSE6 113 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 NUPR2A6NF83 97 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 CRYM-AS1A6NIL9 109 aa0.32□□□□□ -2.36
RNU4-54P-201ENST00000516428 HIGD1CA8MV81 97 aa0.32□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 312.5 ms