RNA–Protein interactions for RNA: ENST00000515785.1

LIMCH1-221, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best)

Gene LIMCH1, Length 1,129 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-221ENST00000515785 SULT1A1P50225 295 aa7.19□□□□□ -1.26
LIMCH1-221ENST00000515785 OR5C1Q8NGR4 320 aa7.19□□□□□ -1.26
LIMCH1-221ENST00000515785 MRPL53Q96EL3 112 aaKnown RBP7.19□□□□□ -1.26
LIMCH1-221ENST00000515785 MGST2Q99735 147 aa7.19□□□□□ -1.26
LIMCH1-221ENST00000515785 SH3BGRL3Q9H299 93 aa7.19□□□□□ -1.26
LIMCH1-221ENST00000515785 DPH3P1Q9H4G8 78 aa7.19□□□□□ -1.26
LIMCH1-221ENST00000515785 RPH3ALQ9UNE2 315 aa7.19□□□□□ -1.26
LIMCH1-221ENST00000515785 TRBV19A0A075B6N1 114 aa7.18□□□□□ -1.26
LIMCH1-221ENST00000515785 IGHV3-73A0A0B4J1V6 119 aa7.18□□□□□ -1.26
LIMCH1-221ENST00000515785 GGTLC3B5MD39 225 aa7.18□□□□□ -1.26
LIMCH1-221ENST00000515785 GNRH2O43555 120 aa7.18□□□□□ -1.26
LIMCH1-221ENST00000515785 NDUFB4O95168 129 aa7.18□□□□□ -1.26
LIMCH1-221ENST00000515785 HIST1H1EP10412 219 aaKnown RBP7.18□□□□□ -1.26
LIMCH1-221ENST00000515785 PVALBP20472 110 aaPredicted RBP7.18□□□□□ -1.26
LIMCH1-221ENST00000515785 VWC2Q2TAL6 325 aa7.18□□□□□ -1.26
LIMCH1-221ENST00000515785 CLLU1Q5K131 121 aa7.18□□□□□ -1.26
LIMCH1-221ENST00000515785 FAM122CQ6P4D5 195 aa7.18□□□□□ -1.26
LIMCH1-221ENST00000515785 SLC25A29Q8N8R3 303 aa7.18□□□□□ -1.26
LIMCH1-221ENST00000515785 Q8TAT8 98 aa7.18□□□□□ -1.26
LIMCH1-221ENST00000515785 TMED6Q8WW62 240 aa7.18□□□□□ -1.26
LIMCH1-221ENST00000515785 GTSF1LQ9H1H1 148 aa7.18□□□□□ -1.26
LIMCH1-221ENST00000515785 ZNF492Q9P255 531 aa7.18□□□□□ -1.26
LIMCH1-221ENST00000515785 PRELID1Q9Y255 219 aa7.18□□□□□ -1.26
LIMCH1-221ENST00000515785 TEX46H3BTG2 121 aa7.17□□□□□ -1.26
LIMCH1-221ENST00000515785 TAAR5O14804 337 aa7.17□□□□□ -1.26
LIMCH1-221ENST00000515785 IFNA7P01567 189 aa7.17□□□□□ -1.26
LIMCH1-221ENST00000515785 PYYP10082 97 aa7.17□□□□□ -1.26
LIMCH1-221ENST00000515785 TPT1P13693 172 aaKnown RBP7.17□□□□□ -1.26
LIMCH1-221ENST00000515785 ATP6V0CP27449 155 aa7.17□□□□□ -1.26
LIMCH1-221ENST00000515785 MIC13Q5XKP0 118 aa7.17□□□□□ -1.26
LIMCH1-221ENST00000515785 HSD17B11Q8NBQ5 300 aa7.17□□□□□ -1.26
LIMCH1-221ENST00000515785 PRADC1Q9BSG0 188 aa7.17□□□□□ -1.26
LIMCH1-221ENST00000515785 PAXXQ9BUH6 204 aa7.17□□□□□ -1.26
LIMCH1-221ENST00000515785 NAGKQ9UJ70 344 aa7.17□□□□□ -1.26
LIMCH1-221ENST00000515785 LINC00862A6NCI5 91 aa7.16□□□□□ -1.26
LIMCH1-221ENST00000515785 M0R2P5 195 aa7.16□□□□□ -1.26
LIMCH1-221ENST00000515785 ZNF253O75346 499 aa7.16□□□□□ -1.26
LIMCH1-221ENST00000515785 ATP6V1G1O75348 118 aa7.16□□□□□ -1.26
LIMCH1-221ENST00000515785 ZNF138P52744 262 aa7.16□□□□□ -1.26
LIMCH1-221ENST00000515785 BAXQ07812 192 aa7.16□□□□□ -1.26
LIMCH1-221ENST00000515785 TOR2AQ5JU69 321 aa7.16□□□□□ -1.26
LIMCH1-221ENST00000515785 FAM159AQ6UWV7 190 aa7.16□□□□□ -1.26
LIMCH1-221ENST00000515785 Q6ZRG5 221 aa7.16□□□□□ -1.26
LIMCH1-221ENST00000515785 ATP5SQ99766 215 aa7.16□□□□□ -1.26
LIMCH1-221ENST00000515785 COX11Q9Y6N1 276 aa7.16□□□□□ -1.26
LIMCH1-221ENST00000515785 TRGV11A0A075B6L2 103 aa7.15□□□□□ -1.26
LIMCH1-221ENST00000515785 TRAV8-1A0A0A6YYK1 113 aa7.15□□□□□ -1.26
LIMCH1-221ENST00000515785 FBLL1A6NHQ2 334 aaKnown RBP7.15□□□□□ -1.26
LIMCH1-221ENST00000515785 FNDC10F2Z333 226 aa7.15□□□□□ -1.26
LIMCH1-221ENST00000515785 H2AFB1P0C5Y9 115 aa7.15□□□□□ -1.26
LIMCH1-221ENST00000515785 CAMLGP49069 296 aa7.15□□□□□ -1.26
LIMCH1-221ENST00000515785 FHITP49789 147 aa7.15□□□□□ -1.26
LIMCH1-221ENST00000515785 OR1L4Q8NGR5 311 aa7.15□□□□□ -1.26
LIMCH1-221ENST00000515785 RMI2Q96E14 147 aa7.15□□□□□ -1.26
LIMCH1-221ENST00000515785 PHYHIPLQ96FC7 376 aa7.15□□□□□ -1.26
LIMCH1-221ENST00000515785 AAMDCQ9H7C9 122 aa7.15□□□□□ -1.26
LIMCH1-221ENST00000515785 PANO1I0J062 215 aa7.14□□□□□ -1.27
LIMCH1-221ENST00000515785 SULT1A2P50226 295 aa7.14□□□□□ -1.27
LIMCH1-221ENST00000515785 ZNF266Q14584 549 aa7.14□□□□□ -1.27
LIMCH1-221ENST00000515785 WDR61Q9GZS3 305 aaKnown RBP7.14□□□□□ -1.27
LIMCH1-221ENST00000515785 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.14□□□□□ -1.27
LIMCH1-221ENST00000515785 BORCS7-ASMTA0A0B4J1R7 106 aa7.13□□□□□ -1.27
LIMCH1-221ENST00000515785 UBE2L5PA0A1B0GUS4 154 aa7.13□□□□□ -1.27
LIMCH1-221ENST00000515785 EIF3GO75821 320 aaKnown RBP eCLIP7.13□□□□□ -1.27
LIMCH1-221ENST00000515785 OR10J4P0C629 311 aa7.13□□□□□ -1.27
LIMCH1-221ENST00000515785 SEC11BP0C7V7 166 aa7.13□□□□□ -1.27
LIMCH1-221ENST00000515785 RHOHQ15669 191 aa7.13□□□□□ -1.27
LIMCH1-221ENST00000515785 STX12Q86Y82 276 aa7.13□□□□□ -1.27
LIMCH1-221ENST00000515785 KLK12Q9UKR0 248 aa7.13□□□□□ -1.27
LIMCH1-221ENST00000515785 GAGE12JA6NER3 117 aa7.12□□□□□ -1.27
LIMCH1-221ENST00000515785 GAGE1Q13065 139 aa7.12□□□□□ -1.27
LIMCH1-221ENST00000515785 GAGE4Q13068 117 aa7.12□□□□□ -1.27
LIMCH1-221ENST00000515785 GAGE5Q13069 117 aa7.12□□□□□ -1.27
LIMCH1-221ENST00000515785 RAB31Q13636 194 aa7.12□□□□□ -1.27
LIMCH1-221ENST00000515785 ZNF726P1Q15940 193 aa7.12□□□□□ -1.27
LIMCH1-221ENST00000515785 ATP6V1FQ16864 119 aa7.12□□□□□ -1.27
LIMCH1-221ENST00000515785 GAGE13Q4V321 117 aa7.12□□□□□ -1.27
LIMCH1-221ENST00000515785 FFAR4Q5NUL3 377 aa7.12□□□□□ -1.27
LIMCH1-221ENST00000515785 OR2G3Q8NGZ4 309 aa7.12□□□□□ -1.27
LIMCH1-221ENST00000515785 UBE2WQ96B02 151 aa7.12□□□□□ -1.27
LIMCH1-221ENST00000515785 PFDN5Q99471 154 aa7.12□□□□□ -1.27
LIMCH1-221ENST00000515785 TMEM14CQ9P0S9 112 aa7.12□□□□□ -1.27
LIMCH1-221ENST00000515785 WDR83OSQ9Y284 106 aa7.12□□□□□ -1.27
LIMCH1-221ENST00000515785 TRBV6-4A0A1B0GX49 114 aa7.11□□□□□ -1.27
LIMCH1-221ENST00000515785 FGF7P21781 194 aa7.11□□□□□ -1.27
LIMCH1-221ENST00000515785 SRSF3P84103 164 aaKnown RBP7.11□□□□□ -1.27
LIMCH1-221ENST00000515785 CFAP126Q5VTH2 177 aa7.11□□□□□ -1.27
LIMCH1-221ENST00000515785 Q6AWC8 147 aa7.11□□□□□ -1.27
LIMCH1-221ENST00000515785 DPPA3Q6W0C5 159 aa7.11□□□□□ -1.27
LIMCH1-221ENST00000515785 COMMD7Q86VX2 200 aa7.11□□□□□ -1.27
LIMCH1-221ENST00000515785 LYPD6BQ8NI32 183 aa7.11□□□□□ -1.27
LIMCH1-221ENST00000515785 DPH3Q96FX2 82 aa7.11□□□□□ -1.27
LIMCH1-221ENST00000515785 GGACTQ9BVM4 153 aa7.11□□□□□ -1.27
LIMCH1-221ENST00000515785 SLC39A9Q9NUM3 307 aa7.11□□□□□ -1.27
LIMCH1-221ENST00000515785 UQCC1Q9NVA1 299 aa7.11□□□□□ -1.27
LIMCH1-221ENST00000515785 URGCP-MRPS24S4R325 110 aa7.11□□□□□ -1.27
LIMCH1-221ENST00000515785 TYMSP04818 313 aa7.1□□□□□ -1.27
LIMCH1-221ENST00000515785 RAB2AP61019 212 aa7.1□□□□□ -1.27
LIMCH1-221ENST00000515785 EIF5AP63241 154 aaKnown RBP7.1□□□□□ -1.27
LIMCH1-221ENST00000515785 HBG1P69891 147 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms