RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 CDK5RAP2Q96SN8 1893 aa8.75□□□□□ -1.01
LIMCH1-217ENST00000512946 IGKV4-1P06312 121 aa8.75□□□□□ -1.01
LIMCH1-217ENST00000512946 CGB3P0DN86 165 aa8.75□□□□□ -1.01
LIMCH1-217ENST00000512946 VPREB1P12018 145 aa8.75□□□□□ -1.01
LIMCH1-217ENST00000512946 GNRH2O43555 120 aa8.75□□□□□ -1.01
LIMCH1-217ENST00000512946 LOXP28300 417 aaPredicted RBP8.74□□□□□ -1.01
LIMCH1-217ENST00000512946 FAM222AQ5U5X8 452 aa8.74□□□□□ -1.01
LIMCH1-217ENST00000512946 MIR7-3HGQ8N6C7 128 aa8.74□□□□□ -1.01
LIMCH1-217ENST00000512946 TP73-AS1Q9UF72 201 aa8.74□□□□□ -1.01
LIMCH1-217ENST00000512946 MTCL1Q9Y4B5 1905 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-217ENST00000512946 INTS1Q8N201 2190 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-217ENST00000512946 PDCD11Q14690 1871 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-217ENST00000512946 WNK2Q9Y3S1 2297 aa8.74□□□□□ -1.01
LIMCH1-217ENST00000512946 IGKV2D-24A0A075B6R9 120 aa8.74□□□□□ -1.01
LIMCH1-217ENST00000512946 IGHV3-30-3P0DP02 117 aa8.74□□□□□ -1.01
LIMCH1-217ENST00000512946 GATA1P15976 413 aaPredicted RBP8.74□□□□□ -1.01
LIMCH1-217ENST00000512946 CFHR3Q02985 330 aa8.74□□□□□ -1.01
LIMCH1-217ENST00000512946 RPL39LQ96EH5 51 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-217ENST00000512946 PCNTO95613 3336 aa8.74□□□□□ -1.01
LIMCH1-217ENST00000512946 MSMBP08118 114 aa8.74□□□□□ -1.01
LIMCH1-217ENST00000512946 BRD3OSQ6XYD6 125 aa8.74□□□□□ -1.01
LIMCH1-217ENST00000512946 SDIM1Q6ZPB5 146 aa8.74□□□□□ -1.01
LIMCH1-217ENST00000512946 WDR86Q86TI4 376 aa8.74□□□□□ -1.01
LIMCH1-217ENST00000512946 WNK3Q9BYP7 1800 aa8.73□□□□□ -1.01
LIMCH1-217ENST00000512946 ADAMTS7Q9UKP4 1686 aa8.73□□□□□ -1.01
LIMCH1-217ENST00000512946 TRBV7-3A0A075B6L6 115 aa8.73□□□□□ -1.01
LIMCH1-217ENST00000512946 UFSP1Q6NVU6 142 aa8.73□□□□□ -1.01
LIMCH1-217ENST00000512946 NACAE9PAV3 2078 aa8.73□□□□□ -1.01
LIMCH1-217ENST00000512946 TEX49A0A1B0GTD5 131 aa8.73□□□□□ -1.01
LIMCH1-217ENST00000512946 A0A1B0GXF2 115 aa8.73□□□□□ -1.01
LIMCH1-217ENST00000512946 H0Y9J4 135 aa8.73□□□□□ -1.01
LIMCH1-217ENST00000512946 M0QXV9 152 aa8.73□□□□□ -1.01
LIMCH1-217ENST00000512946 GNLYP22749 145 aa8.73□□□□□ -1.01
LIMCH1-217ENST00000512946 WFDC11Q8NEX6 87 aa8.73□□□□□ -1.01
LIMCH1-217ENST00000512946 CENPVL3A0A0U1RRI6 287 aa8.72□□□□□ -1.01
LIMCH1-217ENST00000512946 POLEQ07864 2286 aa8.72□□□□□ -1.01
LIMCH1-217ENST00000512946 C4orf48Q5BLP8 95 aa8.72□□□□□ -1.01
LIMCH1-217ENST00000512946 PSME4Q14997 1843 aa8.72□□□□□ -1.01
LIMCH1-217ENST00000512946 Q6JHZ5 121 aa8.72□□□□□ -1.01
LIMCH1-217ENST00000512946 C19orf71A6NCJ1 209 aa8.72□□□□□ -1.01
LIMCH1-217ENST00000512946 PRB1P04280 392 aa8.72□□□□□ -1.01
LIMCH1-217ENST00000512946 KIR2DL5BQ8NHK3 375 aa8.72□□□□□ -1.01
LIMCH1-217ENST00000512946 COL24A1Q17RW2 1714 aa8.71□□□□□ -1.01
LIMCH1-217ENST00000512946 ZNF236Q9UL36 1845 aa8.71□□□□□ -1.01
LIMCH1-217ENST00000512946 G3V318 75 aa8.71□□□□□ -1.01
LIMCH1-217ENST00000512946 COL8A2P25067 703 aa8.71□□□□□ -1.02
LIMCH1-217ENST00000512946 IGKV1OR2-108A0A075B7D4 117 aa8.71□□□□□ -1.02
LIMCH1-217ENST00000512946 HOXB4P17483 251 aaPredicted RBP8.71□□□□□ -1.02
LIMCH1-217ENST00000512946 PMAIP1Q13794 54 aa8.71□□□□□ -1.02
LIMCH1-217ENST00000512946 ENHOQ6UWT2 76 aa8.71□□□□□ -1.02
LIMCH1-217ENST00000512946 IGLV3-9A0A075B6K5 115 aa8.71□□□□□ -1.02
LIMCH1-217ENST00000512946 TTTY13Q9BZ97 58 aa8.71□□□□□ -1.02
LIMCH1-217ENST00000512946 SHANK3Q9BYB0 1731 aa8.7□□□□□ -1.02
LIMCH1-217ENST00000512946 KIAA1217Q5T5P2 1943 aa8.7□□□□□ -1.02
LIMCH1-217ENST00000512946 LINC00526Q96FQ7 95 aa8.7□□□□□ -1.02
LIMCH1-217ENST00000512946 FAM167A-AS1Q96KT0 104 aa8.7□□□□□ -1.02
LIMCH1-217ENST00000512946 CEP290O15078 2479 aa8.7□□□□□ -1.02
LIMCH1-217ENST00000512946 IGKV2D-26A0A0A0MRZ7 120 aa8.7□□□□□ -1.02
LIMCH1-217ENST00000512946 K7EMT4 169 aa8.7□□□□□ -1.02
LIMCH1-217ENST00000512946 SPAG11BQ08648 103 aa8.7□□□□□ -1.02
LIMCH1-217ENST00000512946 RETNQ9HD89 108 aa8.7□□□□□ -1.02
LIMCH1-217ENST00000512946 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-217ENST00000512946 TDRD15B5MCY1 1934 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-217ENST00000512946 Q8N9L7 120 aa8.7□□□□□ -1.02
LIMCH1-217ENST00000512946 IGHV4-4A0A075B6R2 117 aa8.7□□□□□ -1.02
LIMCH1-217ENST00000512946 H7C423 109 aa8.69□□□□□ -1.02
LIMCH1-217ENST00000512946 NOP10Q9NPE3 64 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-217ENST00000512946 ABCA7Q8IZY2 2146 aa8.69□□□□□ -1.02
LIMCH1-217ENST00000512946 ATG2BQ96BY7 2078 aa8.69□□□□□ -1.02
LIMCH1-217ENST00000512946 TRAV7A0A075B6U4 112 aa8.69□□□□□ -1.02
LIMCH1-217ENST00000512946 IBA57-AS1B1ANH7 110 aa8.69□□□□□ -1.02
LIMCH1-217ENST00000512946 E7EQL1 145 aa8.69□□□□□ -1.02
LIMCH1-217ENST00000512946 I3L2K1 104 aa8.69□□□□□ -1.02
LIMCH1-217ENST00000512946 C17orf77Q96MU5 243 aa8.69□□□□□ -1.02
LIMCH1-217ENST00000512946 B9D2Q9BPU9 175 aa8.69□□□□□ -1.02
LIMCH1-217ENST00000512946 BPESC1Q9GZL8 116 aa8.69□□□□□ -1.02
LIMCH1-217ENST00000512946 DEFB121Q5J5C9 76 aa8.68□□□□□ -1.02
LIMCH1-217ENST00000512946 ASPHD1Q5U4P2 390 aa8.68□□□□□ -1.02
LIMCH1-217ENST00000512946 Q6ZSR3 168 aa8.68□□□□□ -1.02
LIMCH1-217ENST00000512946 NPBQ8NG41 125 aa8.68□□□□□ -1.02
LIMCH1-217ENST00000512946 Q9HAA7 133 aa8.68□□□□□ -1.02
LIMCH1-217ENST00000512946 IGLV1-44P01699 117 aa8.68□□□□□ -1.02
LIMCH1-217ENST00000512946 IGHV3-33P01772 117 aa8.68□□□□□ -1.02
LIMCH1-217ENST00000512946 CFAP126Q5VTH2 177 aa8.68□□□□□ -1.02
LIMCH1-217ENST00000512946 NFE4Q86UQ8 179 aa8.68□□□□□ -1.02
LIMCH1-217ENST00000512946 A0A0G2JNJ9 132 aa8.68□□□□□ -1.02
LIMCH1-217ENST00000512946 MSRB1Q9NZV6 116 aa8.68□□□□□ -1.02
LIMCH1-217ENST00000512946 Q9UFV3 132 aa8.68□□□□□ -1.02
LIMCH1-217ENST00000512946 MYO7BQ6PIF6 2116 aa8.67□□□□□ -1.02
LIMCH1-217ENST00000512946 IGKV1-17P01599 117 aa8.67□□□□□ -1.02
LIMCH1-217ENST00000512946 SPART-AS1P0CW21 52 aa8.67□□□□□ -1.02
LIMCH1-217ENST00000512946 VWCEQ96DN2 955 aa8.67□□□□□ -1.02
LIMCH1-217ENST00000512946 CHD3Q12873 2000 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-217ENST00000512946 DOCK10Q96BY6 2186 aa8.67□□□□□ -1.02
LIMCH1-217ENST00000512946 GYPEP15421 78 aa8.67□□□□□ -1.02
LIMCH1-217ENST00000512946 RPL39P62891 51 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-217ENST00000512946 PIK3CD-AS1Q5SR53 167 aa8.67□□□□□ -1.02
LIMCH1-217ENST00000512946 CLPSL2Q6UWE3 100 aa8.67□□□□□ -1.02
LIMCH1-217ENST00000512946 MUC7Q8TAX7 377 aa8.67□□□□□ -1.02
LIMCH1-217ENST00000512946 DKK4Q9UBT3 224 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms