RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 MYMXA0A1B0GTQ4 84 aa7□□□□□ -1.29
LIMCH1-215ENST00000512632 HLA-DRB4P13762 266 aa7□□□□□ -1.29
LIMCH1-215ENST00000512632 SCGB1D4Q6XE38 83 aa7□□□□□ -1.29
LIMCH1-215ENST00000512632 ITLN2Q8WWU7 325 aaPredicted RBP7□□□□□ -1.29
LIMCH1-215ENST00000512632 HLA-DRB4X5D2U9 266 aa7□□□□□ -1.29
LIMCH1-215ENST00000512632 LY6DQ14210 128 aa7□□□□□ -1.29
LIMCH1-215ENST00000512632 MOB4Q9Y3A3 225 aa7□□□□□ -1.29
LIMCH1-215ENST00000512632 SPOCK3Q9BQ16 436 aa7□□□□□ -1.29
LIMCH1-215ENST00000512632 TRBV7-3A0A075B6L6 115 aa6.99□□□□□ -1.29
LIMCH1-215ENST00000512632 DUSP14O95147 198 aaKnown RBP6.99□□□□□ -1.29
LIMCH1-215ENST00000512632 SLC25A16P16260 332 aa6.99□□□□□ -1.29
LIMCH1-215ENST00000512632 EDN2P20800 178 aa6.99□□□□□ -1.29
LIMCH1-215ENST00000512632 BLCAPP62952 87 aa6.99□□□□□ -1.29
LIMCH1-215ENST00000512632 Q6ZS46 218 aa6.99□□□□□ -1.29
LIMCH1-215ENST00000512632 NEXN-AS1Q8NBZ9 246 aa6.99□□□□□ -1.29
LIMCH1-215ENST00000512632 BAALCQ8WXS3 180 aa6.99□□□□□ -1.29
LIMCH1-215ENST00000512632 ZFHX3Q15911 3703 aa6.99□□□□□ -1.29
LIMCH1-215ENST00000512632 TOMM6Q96B49 74 aa6.99□□□□□ -1.29
LIMCH1-215ENST00000512632 TSSC4Q9Y5U2 329 aaPredicted RBP6.99□□□□□ -1.29
LIMCH1-215ENST00000512632 USP9YO00507 2555 aaPredicted RBP6.99□□□□□ -1.29
LIMCH1-215ENST00000512632 ZNF815PA8K554 130 aa6.99□□□□□ -1.29
LIMCH1-215ENST00000512632 F5H697 171 aa6.99□□□□□ -1.29
LIMCH1-215ENST00000512632 SRSF9Q13242 221 aaKnown RBP eCLIP6.99□□□□□ -1.29
LIMCH1-215ENST00000512632 A0A087WWL8 130 aa6.99□□□□□ -1.29
LIMCH1-215ENST00000512632 OVOL1O14753 267 aa6.99□□□□□ -1.29
LIMCH1-215ENST00000512632 LGALS1P09382 135 aaKnown RBP6.99□□□□□ -1.29
LIMCH1-215ENST00000512632 SMAGPQ0VAQ4 97 aa6.99□□□□□ -1.29
LIMCH1-215ENST00000512632 KLK9Q2XQG4 91 aa6.99□□□□□ -1.29
LIMCH1-215ENST00000512632 PLEKHB2Q96CS7 222 aa6.99□□□□□ -1.29
LIMCH1-215ENST00000512632 RHPN1-AS1Q9BWJ2 59 aa6.99□□□□□ -1.29
LIMCH1-215ENST00000512632 KLK9Q9UKQ9 250 aa6.99□□□□□ -1.29
LIMCH1-215ENST00000512632 IGKV3-20P01619 116 aa6.98□□□□□ -1.29
LIMCH1-215ENST00000512632 RNASE3P12724 160 aaKnown RBP6.98□□□□□ -1.29
LIMCH1-215ENST00000512632 RRN3P1Q2M238 152 aa6.98□□□□□ -1.29
LIMCH1-215ENST00000512632 LENEPQ9Y5L5 61 aa6.98□□□□□ -1.29
LIMCH1-215ENST00000512632 TRAV12-1A0A0B4J245 112 aa6.98□□□□□ -1.29
LIMCH1-215ENST00000512632 C20orf78Q9BR46 151 aa6.98□□□□□ -1.29
LIMCH1-215ENST00000512632 INSL3P51460 131 aa6.98□□□□□ -1.29
LIMCH1-215ENST00000512632 TAL2Q16559 108 aa6.98□□□□□ -1.29
LIMCH1-215ENST00000512632 SPANXB1Q9NS25 103 aaPredicted RBP6.98□□□□□ -1.29
LIMCH1-215ENST00000512632 PGPEP1Q9NXJ5 209 aa6.98□□□□□ -1.29
LIMCH1-215ENST00000512632 ABCA2Q9BZC7 2435 aa6.97□□□□□ -1.29
LIMCH1-215ENST00000512632 FAM223BA6NKX1 122 aa6.97□□□□□ -1.29
LIMCH1-215ENST00000512632 H3BUX3 64 aa6.97□□□□□ -1.29
LIMCH1-215ENST00000512632 C19orf84I3L1E1 186 aa6.97□□□□□ -1.29
LIMCH1-215ENST00000512632 HOXA3O43365 443 aaPredicted RBP6.97□□□□□ -1.29
LIMCH1-215ENST00000512632 APOMO95445 188 aa6.97□□□□□ -1.29
LIMCH1-215ENST00000512632 IGHV4-38-2P0DP08 117 aa6.97□□□□□ -1.29
LIMCH1-215ENST00000512632 GAGE13Q4V321 117 aa6.97□□□□□ -1.29
LIMCH1-215ENST00000512632 FAM223AQ8IWN6 122 aa6.97□□□□□ -1.29
LIMCH1-215ENST00000512632 RPL39P62891 51 aaKnown RBP6.97□□□□□ -1.29
LIMCH1-215ENST00000512632 LINC01549A6NIU2 74 aa6.97□□□□□ -1.29
LIMCH1-215ENST00000512632 RNF223E7ERA6 249 aa6.97□□□□□ -1.29
LIMCH1-215ENST00000512632 NDUFA4O00483 81 aa6.97□□□□□ -1.29
LIMCH1-215ENST00000512632 AZU1P20160 251 aa6.97□□□□□ -1.29
LIMCH1-215ENST00000512632 FAM74A4Q5TZK3 123 aa6.97□□□□□ -1.29
LIMCH1-215ENST00000512632 MUC4Q99102 2169 aa6.97□□□□□ -1.29
LIMCH1-215ENST00000512632 IGHV1-69DA0A0B4J2H0 117 aa6.97□□□□□ -1.29
LIMCH1-215ENST00000512632 LOC107984156A0A0G2JMH3 177 aa6.97□□□□□ -1.29
LIMCH1-215ENST00000512632 A0A1B0GWB2 263 aa6.97□□□□□ -1.29
LIMCH1-215ENST00000512632 F8W1H4 67 aa6.97□□□□□ -1.29
LIMCH1-215ENST00000512632 SOCS3O14543 225 aa6.97□□□□□ -1.29
LIMCH1-215ENST00000512632 IGHV1-69P01742 117 aa6.97□□□□□ -1.29
LIMCH1-215ENST00000512632 ARL17AQ8IVW1 177 aa6.97□□□□□ -1.29
LIMCH1-215ENST00000512632 SPAG8Q99932 426 aaPredicted RBP6.97□□□□□ -1.29
LIMCH1-215ENST00000512632 MRPL16Q9NX20 251 aaKnown RBP6.97□□□□□ -1.29
LIMCH1-215ENST00000512632 SAMD13Q5VXD3 122 aa6.96□□□□□ -1.29
LIMCH1-215ENST00000512632 TP53TG1Q9Y2A0 90 aa6.96□□□□□ -1.29
LIMCH1-215ENST00000512632 TRAV12-3A0A0B4J271 114 aa6.96□□□□□ -1.3
LIMCH1-215ENST00000512632 C11orf86A6NJI1 115 aa6.96□□□□□ -1.3
LIMCH1-215ENST00000512632 IGHV4-39P01824 125 aa6.96□□□□□ -1.3
LIMCH1-215ENST00000512632 MORN3Q6PF18 240 aaPredicted RBP6.96□□□□□ -1.3
LIMCH1-215ENST00000512632 IGHV4-61A0A0C4DH41 118 aa6.96□□□□□ -1.3
LIMCH1-215ENST00000512632 FAM159AQ6UWV7 190 aa6.96□□□□□ -1.3
LIMCH1-215ENST00000512632 CRYGDP07320 174 aa6.95□□□□□ -1.3
LIMCH1-215ENST00000512632 CD7P09564 240 aa6.95□□□□□ -1.3
LIMCH1-215ENST00000512632 C19orf54Q5BKX5 351 aa6.95□□□□□ -1.3
LIMCH1-215ENST00000512632 ZNF256Q9Y2P7 627 aaPredicted RBP6.95□□□□□ -1.3
LIMCH1-215ENST00000512632 GAGE12HA6NDE8 117 aa6.95□□□□□ -1.3
LIMCH1-215ENST00000512632 TMEM170BQ5T4T1 132 aa6.95□□□□□ -1.3
LIMCH1-215ENST00000512632 SIGMAR1Q99720 223 aa6.95□□□□□ -1.3
LIMCH1-215ENST00000512632 TMEM95Q3KNT9 176 aa6.95□□□□□ -1.3
LIMCH1-215ENST00000512632 ZFP2Q6ZN57 461 aa6.95□□□□□ -1.3
LIMCH1-215ENST00000512632 J3QR89 54 aa6.95□□□□□ -1.3
LIMCH1-215ENST00000512632 TSHBP01222 138 aa6.95□□□□□ -1.3
LIMCH1-215ENST00000512632 TRAV12-2A0A075B6T6 113 aa6.94□□□□□ -1.3
LIMCH1-215ENST00000512632 TGFAP01135 160 aa6.94□□□□□ -1.3
LIMCH1-215ENST00000512632 UCNP55089 124 aa6.94□□□□□ -1.3
LIMCH1-215ENST00000512632 LINC00315P59091 139 aa6.94□□□□□ -1.3
LIMCH1-215ENST00000512632 ZNF688P0C7X2 276 aa6.94□□□□□ -1.3
LIMCH1-215ENST00000512632 OPRPNQ99935 248 aaPredicted RBP6.94□□□□□ -1.3
LIMCH1-215ENST00000512632 NOTCH3Q9UM47 2321 aa6.94□□□□□ -1.3
LIMCH1-215ENST00000512632 SUMO4Q6EEV6 95 aa6.94□□□□□ -1.3
LIMCH1-215ENST00000512632 KIF25-AS1Q9Y6Z4 181 aa6.94□□□□□ -1.3
LIMCH1-215ENST00000512632 PSMB2P49721 201 aa6.93□□□□□ -1.3
LIMCH1-215ENST00000512632 ZNF418Q8TF45 676 aaPredicted RBP6.93□□□□□ -1.3
LIMCH1-215ENST00000512632 SDHAF1A6NFY7 115 aa6.93□□□□□ -1.3
LIMCH1-215ENST00000512632 PRO0461Q9UI25 63 aa6.93□□□□□ -1.3
LIMCH1-215ENST00000512632 PTH2Q96A98 100 aa6.93□□□□□ -1.3
LIMCH1-215ENST00000512632 USMG5Q96IX5 58 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms