RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 LINC00476Q8WZB0 136 aa8.03□□□□□ -1.12
LIMCH1-210ENST00000509454 SMIM12Q96EX1 92 aa8.03□□□□□ -1.12
LIMCH1-210ENST00000509454 SMIM7Q9BQ49 75 aa8.03□□□□□ -1.12
LIMCH1-210ENST00000509454 PHLDA3Q9Y5J5 127 aa8.03□□□□□ -1.12
LIMCH1-210ENST00000509454 TRBV20OR9-2A0A075B6H5 130 aa8.03□□□□□ -1.12
LIMCH1-210ENST00000509454 TRAV4A0A0B4J268 109 aa8.03□□□□□ -1.12
LIMCH1-210ENST00000509454 ZNF727A8MUV8 499 aa8.03□□□□□ -1.12
LIMCH1-210ENST00000509454 IGLV2-8P01709 118 aa8.03□□□□□ -1.12
LIMCH1-210ENST00000509454 SRP19P09132 144 aaKnown RBP8.03□□□□□ -1.12
LIMCH1-210ENST00000509454 C15orf53Q8NAA6 179 aa8.03□□□□□ -1.12
LIMCH1-210ENST00000509454 OR2D3Q8NGH3 330 aa8.03□□□□□ -1.12
LIMCH1-210ENST00000509454 ZNF479Q96JC4 524 aa8.03□□□□□ -1.12
LIMCH1-210ENST00000509454 TPPP3Q9BW30 176 aa8.03□□□□□ -1.12
LIMCH1-210ENST00000509454 IL36BQ9NZH7 164 aa8.03□□□□□ -1.12
LIMCH1-210ENST00000509454 IGHV3-73A0A0B4J1V6 119 aa8.02□□□□□ -1.13
LIMCH1-210ENST00000509454 M0R381 172 aa8.02□□□□□ -1.13
LIMCH1-210ENST00000509454 PAX4O43316 350 aa8.02□□□□□ -1.13
LIMCH1-210ENST00000509454 SSTP61278 116 aa8.02□□□□□ -1.13
LIMCH1-210ENST00000509454 LINC00528Q8N1L1 170 aa8.02□□□□□ -1.13
LIMCH1-210ENST00000509454 OCC1Q8TAD7 63 aa8.02□□□□□ -1.13
LIMCH1-210ENST00000509454 C18orf15Q96N68 181 aa8.02□□□□□ -1.13
LIMCH1-210ENST00000509454 CSMD3Q7Z407 3707 aa8.02□□□□□ -1.13
LIMCH1-210ENST00000509454 MUC4Q99102 2169 aa8.01□□□□□ -1.13
LIMCH1-210ENST00000509454 XKRY2A2RUG3 117 aa8.01□□□□□ -1.13
LIMCH1-210ENST00000509454 RPS20P60866 119 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-210ENST00000509454 HHLA3Q9XRX5 114 aa8.01□□□□□ -1.13
LIMCH1-210ENST00000509454 MUC21A0A0G2JKD1 596 aa8□□□□□ -1.13
LIMCH1-210ENST00000509454 MUC21A0A140T8X8 626 aa8□□□□□ -1.13
LIMCH1-210ENST00000509454 K7EN84 100 aa8□□□□□ -1.13
LIMCH1-210ENST00000509454 P0DMU3 169 aa8□□□□□ -1.13
LIMCH1-210ENST00000509454 FAM231AP0DMU4 169 aa8□□□□□ -1.13
LIMCH1-210ENST00000509454 FAM231CP0DMU5 169 aa8□□□□□ -1.13
LIMCH1-210ENST00000509454 GZMBP10144 247 aa8□□□□□ -1.13
LIMCH1-210ENST00000509454 SRSF3P84103 164 aaKnown RBP8□□□□□ -1.13
LIMCH1-210ENST00000509454 SLAQ13239 276 aa8□□□□□ -1.13
LIMCH1-210ENST00000509454 FHL2Q14192 279 aa8□□□□□ -1.13
LIMCH1-210ENST00000509454 DNLZQ5SXM8 178 aa8□□□□□ -1.13
LIMCH1-210ENST00000509454 LGALS9CQ6DKI2 356 aa8□□□□□ -1.13
LIMCH1-210ENST00000509454 ZFP82Q8N141 532 aa8□□□□□ -1.13
LIMCH1-210ENST00000509454 RNASE7Q9H1E1 156 aaKnown RBP8□□□□□ -1.13
LIMCH1-210ENST00000509454 PRO0255Q9UI72 69 aa8□□□□□ -1.13
LIMCH1-210ENST00000509454 NACAE9PAV3 2078 aa8□□□□□ -1.13
LIMCH1-210ENST00000509454 C19orf71A6NCJ1 209 aa7.99□□□□□ -1.13
LIMCH1-210ENST00000509454 RS1O15537 224 aa7.99□□□□□ -1.13
LIMCH1-210ENST00000509454 NDUFS6O75380 124 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-210ENST00000509454 FAM74A4Q5TZK3 123 aa7.99□□□□□ -1.13
LIMCH1-210ENST00000509454 SPANXN1Q5VSR9 72 aa7.99□□□□□ -1.13
LIMCH1-210ENST00000509454 CFAP126Q5VTH2 177 aa7.99□□□□□ -1.13
LIMCH1-210ENST00000509454 POM121L12Q8N7R1 296 aa7.99□□□□□ -1.13
LIMCH1-210ENST00000509454 NUDT10Q8NFP7 164 aa7.99□□□□□ -1.13
LIMCH1-210ENST00000509454 PTH2Q96A98 100 aa7.99□□□□□ -1.13
LIMCH1-210ENST00000509454 NUDT11Q96G61 164 aa7.99□□□□□ -1.13
LIMCH1-210ENST00000509454 PGPEP1Q9NXJ5 209 aa7.99□□□□□ -1.13
LIMCH1-210ENST00000509454 A8MWV9 139 aa7.98□□□□□ -1.13
LIMCH1-210ENST00000509454 C9JQL5 133 aa7.98□□□□□ -1.13
LIMCH1-210ENST00000509454 GATCO43716 136 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-210ENST00000509454 CXCL1P09341 107 aa7.98□□□□□ -1.13
LIMCH1-210ENST00000509454 MED14OSP0DP75 135 aa7.98□□□□□ -1.13
LIMCH1-210ENST00000509454 CRYBA4P53673 196 aa7.98□□□□□ -1.13
LIMCH1-210ENST00000509454 ERVFC1-1P60608 527 aa7.98□□□□□ -1.13
LIMCH1-210ENST00000509454 IFITM2Q01629 132 aa7.98□□□□□ -1.13
LIMCH1-210ENST00000509454 FER1L6-AS1Q8NA97 138 aa7.98□□□□□ -1.13
LIMCH1-210ENST00000509454 OR10AG1Q8NH19 301 aa7.98□□□□□ -1.13
LIMCH1-210ENST00000509454 VSIG2Q96IQ7 327 aa7.98□□□□□ -1.13
LIMCH1-210ENST00000509454 RPP21Q9H633 154 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-210ENST00000509454 JPT2Q9H910 190 aa7.98□□□□□ -1.13
LIMCH1-210ENST00000509454 ICOSQ9Y6W8 199 aa7.98□□□□□ -1.13
LIMCH1-210ENST00000509454 A0A087WWL8 130 aa7.98□□□□□ -1.13
LIMCH1-210ENST00000509454 A0A096LPF7 62 aa7.98□□□□□ -1.13
LIMCH1-210ENST00000509454 GYPEP15421 78 aa7.98□□□□□ -1.13
LIMCH1-210ENST00000509454 TMEM241Q24JQ0 296 aa7.98□□□□□ -1.13
LIMCH1-210ENST00000509454 FAM74A3Q4VXF1 159 aa7.98□□□□□ -1.13
LIMCH1-210ENST00000509454 SOHLH1Q5JUK2 328 aa7.98□□□□□ -1.13
LIMCH1-210ENST00000509454 CLLU1Q5K131 121 aa7.98□□□□□ -1.13
LIMCH1-210ENST00000509454 SMDT1Q9H4I9 107 aa7.98□□□□□ -1.13
LIMCH1-210ENST00000509454 SCRT2Q9NQ03 307 aa7.98□□□□□ -1.13
LIMCH1-210ENST00000509454 LY96Q9Y6Y9 160 aa7.98□□□□□ -1.13
LIMCH1-210ENST00000509454 H3BNG1 76 aa7.97□□□□□ -1.13
LIMCH1-210ENST00000509454 CCL18P55774 89 aa7.97□□□□□ -1.13
LIMCH1-210ENST00000509454 ADIRFQ15847 76 aa7.97□□□□□ -1.13
LIMCH1-210ENST00000509454 ZNF575Q86XF7 245 aa7.97□□□□□ -1.13
LIMCH1-210ENST00000509454 PRADC1Q9BSG0 188 aa7.97□□□□□ -1.13
LIMCH1-210ENST00000509454 CIDEAO60543 219 aa7.96□□□□□ -1.14
LIMCH1-210ENST00000509454 OR5AL1P0C617 328 aa7.96□□□□□ -1.14
LIMCH1-210ENST00000509454 GATA1P15976 413 aaPredicted RBP7.96□□□□□ -1.14
LIMCH1-210ENST00000509454 SRIP30626 198 aa7.96□□□□□ -1.14
LIMCH1-210ENST00000509454 PIK3CD-AS1Q5SR53 167 aa7.96□□□□□ -1.14
LIMCH1-210ENST00000509454 LINC01551Q86U37 167 aa7.96□□□□□ -1.14
LIMCH1-210ENST00000509454 C15orf54Q8N8G6 183 aa7.96□□□□□ -1.14
LIMCH1-210ENST00000509454 SAMD10Q9BYL1 202 aa7.96□□□□□ -1.14
LIMCH1-210ENST00000509454 NAT8Q9UHE5 227 aa7.96□□□□□ -1.14
LIMCH1-210ENST00000509454 RHODO00212 210 aa7.95□□□□□ -1.14
LIMCH1-210ENST00000509454 SNAI2O43623 268 aa7.95□□□□□ -1.14
LIMCH1-210ENST00000509454 SMIM17P0DL12 118 aa7.95□□□□□ -1.14
LIMCH1-210ENST00000509454 MRPL23Q16540 153 aaKnown RBP7.95□□□□□ -1.14
LIMCH1-210ENST00000509454 LYZL1Q6UWQ5 148 aa7.95□□□□□ -1.14
LIMCH1-210ENST00000509454 SFRP2Q96HF1 295 aa7.95□□□□□ -1.14
LIMCH1-210ENST00000509454 LOC100131303A0A0U1RQF7 123 aa7.94□□□□□ -1.14
LIMCH1-210ENST00000509454 A0A1W2PPQ1 181 aa7.94□□□□□ -1.14
LIMCH1-210ENST00000509454 CACNG7P62955 275 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms