RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 NKAPP1Q8N9T2 125 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 OR5C1Q8NGR4 320 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 UBALD1Q8TB05 177 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 TMEM230Q96A57 120 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 FAM3DQ96BQ1 224 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 METTL26Q96S19 204 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 DSCR8Q96T75 97 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 UPK3BQ9BT76 320 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 SLC25A2Q9BXI2 301 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 NXT2Q9NPJ8 142 aaKnown RBP1.15□□□□□ -2.23
NUP54-208ENST00000508604 CALYQ9NYX4 217 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 GNG13Q9P2W3 67 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 LINC00527Q9UJ94 153 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 ANAPC10Q9UM13 185 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 HHLA3Q9XRX5 114 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 F11RQ9Y624 299 aaKnown RBP1.15□□□□□ -2.23
NUP54-208ENST00000508604 RALGAPA2Q2PPJ7 1873 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 PAPPA2Q9BXP8 1791 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 DOCK9Q9BZ29 2069 aa1.15□□□□□ -2.23
NUP54-208ENST00000508604 COL1A1P02452 1464 aaPredicted RBP1.14□□□□□ -2.23
NUP54-208ENST00000508604 FBN3Q75N90 2809 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 IGLV3-22A0A075B6J6 115 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 IGHV3OR15-7A0A075B7D8 119 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 A0A0D9SEW6 157 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 MYMXA0A1B0GTQ4 84 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 TCRBV4S1A1TA0A5B7 111 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 CEBPZOSA8MTT3 80 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 NDUFC1O43677 76 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 NPYP01303 97 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 GCHFRP30047 84 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 S100A3P33764 101 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 MYCNOSP40205 109 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 FXYD2P54710 66 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 CCL23P55773 120 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 PCBD1P61457 104 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 INSL4Q14641 139 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 NUMA1Q14980 2115 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 ORMDL2Q53FV1 153 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 FAM222AQ5U5X8 452 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 MIC13Q5XKP0 118 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 FAM104BQ5XKR9 115 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 FP248Q71RG6 208 aaPredicted RBP1.14□□□□□ -2.23
NUP54-208ENST00000508604 ATP5L2Q7Z4Y8 100 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 VN1R4Q7Z5H5 301 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 FAM19A2Q8N3H0 131 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 RPP25LQ8N5L8 163 aaKnown RBP1.14□□□□□ -2.23
NUP54-208ENST00000508604 C3orf56Q8N813 242 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 WFDC11Q8NEX6 87 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 C10orf105Q8TEF2 133 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 IFI27L1Q96BM0 104 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 C11orf68Q9H3H3 251 aaKnown RBP1.14□□□□□ -2.23
NUP54-208ENST00000508604 DYNLRB1Q9NP97 96 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 NHP2Q9NX24 153 aaKnown RBP1.14□□□□□ -2.23
NUP54-208ENST00000508604 EPDR1Q9UM22 224 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 KLK5Q9Y337 293 aaPredicted RBP1.14□□□□□ -2.23
NUP54-208ENST00000508604 TIMM9Q9Y5J7 89 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 HILPDAQ9Y5L2 63 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 SLC25A15Q9Y619 301 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 NHSQ6T4R5 1651 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 PLXNA3P51805 1871 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 ZNF236Q9UL36 1845 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 KIAA1549Q9HCM3 1950 aa1.14□□□□□ -2.23
NUP54-208ENST00000508604 ANAPC1Q9H1A4 1944 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 PLXNB3Q9ULL4 1909 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 IGHV3OR16-13A0A075B7E8 117 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 IGHV1OR21-1A0A087WYE8 117 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 C19orf71A6NCJ1 209 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 C9JCJ5 164 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 F6UB75 175 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 H3BP45 60 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 M0R378 163 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 SLC25A20O43772 301 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 PPYP01298 95 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 HBDP02042 147 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 PSMB2P49721 201 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 EFNA4P52798 201 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 SNRPD3P62318 126 aaKnown RBP1.13□□□□□ -2.23
NUP54-208ENST00000508604 CACNG7P62955 275 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 DYNLT1P63172 113 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 HBBP68871 147 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 RPL18Q07020 188 aaKnown RBP1.13□□□□□ -2.23
NUP54-208ENST00000508604 CASC10Q5T4H9 136 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 CLEC19AQ6UXS0 136 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 UNQ9165/PRO28630Q6UXU0 137 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 LCA10Q71F78 164 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 MARCH3Q86UD3 253 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 Q8N2B8 174 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 TMEM75Q8N9X5 138 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 MORN4Q8NDC4 146 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 OR8A1Q8NGG7 326 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 CCL17Q92583 94 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 TOMM6Q96B49 74 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 CXCL16Q9H2A7 254 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 OSTCQ9NRP0 149 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 ZNF492Q9P255 531 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 KIAA1671Q9BY89 1806 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 GPR179Q6PRD1 2367 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 DOCK8Q8NF50 2099 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 TRPM6Q9BX84 2022 aa1.13□□□□□ -2.23
NUP54-208ENST00000508604 DOCK4Q8N1I0 1966 aa1.13□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms