RNA–Protein interactions for RNA: ENST00000498325.5

HMGXB4-208, Transcript of HMG-box containing 4, humanhuman

TSL 3

Gene HMGXB4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-208ENST00000498325 PRR25Q96S07 402 aa3.97□□□□□ -1.77
HMGXB4-208ENST00000498325 MIEN1Q9BRT3 115 aa3.97□□□□□ -1.77
HMGXB4-208ENST00000498325 SNHG12Q9BXW3 62 aa3.97□□□□□ -1.77
HMGXB4-208ENST00000498325 GOLT1BQ9Y3E0 138 aa3.97□□□□□ -1.77
HMGXB4-208ENST00000498325 LENEPQ9Y5L5 61 aa3.97□□□□□ -1.77
HMGXB4-208ENST00000498325 KIAA1109Q2LD37 5005 aa3.97□□□□□ -1.77
HMGXB4-208ENST00000498325 NOTCH3Q9UM47 2321 aa3.96□□□□□ -1.77
HMGXB4-208ENST00000498325 COL7A1Q02388 2944 aa3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 IGKV3-7A0A075B6H7 116 aa3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 IGKV2-40A0A087WW87 121 aaPredicted RBP3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 TRAV2A0A0B4J234 112 aa3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 SMIM27A0A1W2PRY6 76 aa3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 C19orf71A6NCJ1 209 aa3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 FAM231BA6NCW3 169 aa3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 IZUMO1RA6ND01 250 aa3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 FABP5P3A8MUU1 101 aa3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 CCL24O00175 119 aa3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 SOCS3O14543 225 aa3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 SCGB1D1O95968 90 aa3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 IGKV2D-40P01614 121 aaPredicted RBP3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 KRTAP10-3P60369 221 aa3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 RPS20P60866 119 aaKnown RBP3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 SNRPD3P62318 126 aaKnown RBP3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 DEFB136Q30KP8 78 aa3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 COL5A1-AS1Q5SY13 56 aa3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 FAM162BQ5T6X4 162 aa3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 TEX43Q6ZNM6 134 aa3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 RBPMS2Q6ZRY4 209 aaKnown RBP3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 C18orf65Q6ZTR6 163 aa3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 C11orf44Q8N8P7 122 aa3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 OR9G4Q8NGQ1 327 aa3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 DYNLRB2Q8TF09 96 aa3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 TSKUQ8WUA8 353 aa3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 DLX4Q92988 240 aaPredicted RBP3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 ZC2HC1AQ96GY0 325 aa3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 ASCL2Q99929 193 aa3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 CITED2Q99967 270 aaPredicted RBP3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 VGLL1Q99990 258 aa3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 GFRA4Q9GZZ7 299 aa3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 AGPAT4-IT1Q9H0P7 198 aa3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 RPP21Q9H633 154 aaKnown RBP3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 NAT8BQ9UHF3 227 aa3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 TRAPPC1Q9Y5R8 145 aa3.96□□□□□ -1.78
HMGXB4-208ENST00000498325 DNAH3Q8TD57 4116 aa3.95□□□□□ -1.78
HMGXB4-208ENST00000498325 TRAV25A0A0B4J276 109 aa3.95□□□□□ -1.78
HMGXB4-208ENST00000498325 TRBV7-9A0A0J9YWB2 115 aa3.95□□□□□ -1.78
HMGXB4-208ENST00000498325 TMEM189A5PLL7 270 aa3.95□□□□□ -1.78
HMGXB4-208ENST00000498325 PRAC2D3DTV9 90 aa3.95□□□□□ -1.78
HMGXB4-208ENST00000498325 K7EQG2 157 aa3.95□□□□□ -1.78
HMGXB4-208ENST00000498325 DUSP14O95147 198 aaKnown RBP3.95□□□□□ -1.78
HMGXB4-208ENST00000498325 MT-ND6P03923 174 aa3.95□□□□□ -1.78
HMGXB4-208ENST00000498325 CSN3P07498 182 aa3.95□□□□□ -1.78
HMGXB4-208ENST00000498325 ZNF25P17030 456 aaPredicted RBP3.95□□□□□ -1.78
HMGXB4-208ENST00000498325 TFPI2P48307 235 aa3.95□□□□□ -1.78
HMGXB4-208ENST00000498325 CMC4P56277 68 aaPredicted RBP3.95□□□□□ -1.78
HMGXB4-208ENST00000498325 HIST1H1AQ02539 215 aaPredicted RBP3.95□□□□□ -1.78
HMGXB4-208ENST00000498325 Q0VG73 95 aa3.95□□□□□ -1.78
HMGXB4-208ENST00000498325 ERCC8Q13216 396 aa3.95□□□□□ -1.78
HMGXB4-208ENST00000498325 FHL3Q13643 280 aa3.95□□□□□ -1.78
HMGXB4-208ENST00000498325 Q6AWC8 147 aa3.95□□□□□ -1.78
HMGXB4-208ENST00000498325 EBLN2Q6P2I7 272 aa3.95□□□□□ -1.78
HMGXB4-208ENST00000498325 WDR73Q6P4I2 378 aa3.95□□□□□ -1.78
HMGXB4-208ENST00000498325 RASL11AQ6T310 242 aa3.95□□□□□ -1.78
HMGXB4-208ENST00000498325 NDUFA11Q86Y39 141 aa3.95□□□□□ -1.78
HMGXB4-208ENST00000498325 OR8A1Q8NGG7 326 aa3.95□□□□□ -1.78
HMGXB4-208ENST00000498325 OR2D3Q8NGH3 330 aa3.95□□□□□ -1.78
HMGXB4-208ENST00000498325 BORCS7Q96B45 105 aa3.95□□□□□ -1.78
HMGXB4-208ENST00000498325 TMEM208Q9BTX3 173 aa3.95□□□□□ -1.78
HMGXB4-208ENST00000498325 MS4A6AQ9H2W1 248 aa3.95□□□□□ -1.78
HMGXB4-208ENST00000498325 SIGLEC8Q9NYZ4 499 aa3.95□□□□□ -1.78
HMGXB4-208ENST00000498325 LYSTQ99698 3801 aa3.94□□□□□ -1.78
HMGXB4-208ENST00000498325 LCE6AA0A183 80 aa3.94□□□□□ -1.78
HMGXB4-208ENST00000498325 C20orf202A1L168 122 aa3.94□□□□□ -1.78
HMGXB4-208ENST00000498325 RBMY1BA6NDE4 496 aaKnown RBP3.94□□□□□ -1.78
HMGXB4-208ENST00000498325 RBMY1EA6NEQ0 496 aaKnown RBP3.94□□□□□ -1.78
HMGXB4-208ENST00000498325 OR4C46A6NHA9 309 aa3.94□□□□□ -1.78
HMGXB4-208ENST00000498325 SH2D1AO60880 128 aa3.94□□□□□ -1.78
HMGXB4-208ENST00000498325 ORM1P02763 201 aa3.94□□□□□ -1.78
HMGXB4-208ENST00000498325 RBMY1DP0C7P1 496 aaKnown RBP3.94□□□□□ -1.78
HMGXB4-208ENST00000498325 NHLRC4P0CG21 123 aaPredicted RBP3.94□□□□□ -1.78
HMGXB4-208ENST00000498325 ZNF705DP0CH99 300 aaPredicted RBP3.94□□□□□ -1.78
HMGXB4-208ENST00000498325 ZNF705BP0CI00 300 aaPredicted RBP3.94□□□□□ -1.78
HMGXB4-208ENST00000498325 EDN2P20800 178 aa3.94□□□□□ -1.78
HMGXB4-208ENST00000498325 FOXA3P55318 350 aaPredicted RBP3.94□□□□□ -1.78
HMGXB4-208ENST00000498325 TCL1AP56279 114 aa3.94□□□□□ -1.78
HMGXB4-208ENST00000498325 DEFB114Q30KQ6 69 aa3.94□□□□□ -1.78
HMGXB4-208ENST00000498325 NSUN5P1Q3KNT7 163 aa3.94□□□□□ -1.78
HMGXB4-208ENST00000498325 LINC00322Q6ZN03 302 aaPredicted RBP3.94□□□□□ -1.78
HMGXB4-208ENST00000498325 ZNF705AQ6ZN79 300 aaPredicted RBP3.94□□□□□ -1.78
HMGXB4-208ENST00000498325 ATP5L2Q7Z4Y8 100 aa3.94□□□□□ -1.78
HMGXB4-208ENST00000498325 DCANP1Q8TF63 244 aa3.94□□□□□ -1.78
HMGXB4-208ENST00000498325 DUX3Q96PT4 197 aa3.94□□□□□ -1.78
HMGXB4-208ENST00000498325 CITED1Q99966 193 aa3.94□□□□□ -1.78
HMGXB4-208ENST00000498325 VAMP8Q9BV40 100 aa3.94□□□□□ -1.78
HMGXB4-208ENST00000498325 GNB1LQ9BYB4 327 aa3.94□□□□□ -1.78
HMGXB4-208ENST00000498325 CSMD3Q7Z407 3707 aa3.94□□□□□ -1.78
HMGXB4-208ENST00000498325 TRAV21A0A0B4J279 112 aa3.93□□□□□ -1.78
HMGXB4-208ENST00000498325 A0A1B0GW15 77 aa3.93□□□□□ -1.78
HMGXB4-208ENST00000498325 HIGD1CA8MV81 97 aa3.93□□□□□ -1.78
HMGXB4-208ENST00000498325 SNURFLB1AK76 121 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms