RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 PRR20BP86481 221 aa10.27□□□□□ -0.76
PTPRF-215ENST00000496447 PRR20AP86496 221 aa10.27□□□□□ -0.76
PTPRF-215ENST00000496447 UBE2BP63146 152 aa10.27□□□□□ -0.77
PTPRF-215ENST00000496447 RNASE13Q5GAN3 156 aaKnown RBP10.27□□□□□ -0.77
PTPRF-215ENST00000496447 SPART-AS1P0CW21 52 aa10.27□□□□□ -0.77
PTPRF-215ENST00000496447 XCL1P47992 114 aa10.27□□□□□ -0.77
PTPRF-215ENST00000496447 ACYP1P07311 99 aa10.26□□□□□ -0.77
PTPRF-215ENST00000496447 PLA2G5P39877 138 aa10.26□□□□□ -0.77
PTPRF-215ENST00000496447 RBAKDNA6NC62 111 aa10.26□□□□□ -0.77
PTPRF-215ENST00000496447 K7EN84 100 aa10.26□□□□□ -0.77
PTPRF-215ENST00000496447 C20orf78Q9BR46 151 aa10.26□□□□□ -0.77
PTPRF-215ENST00000496447 FGF23Q9GZV9 251 aaPredicted RBP10.26□□□□□ -0.77
PTPRF-215ENST00000496447 SEM1Q6ZVN7 128 aa10.26□□□□□ -0.77
PTPRF-215ENST00000496447 NTN5Q8WTR8 489 aaPredicted RBP10.26□□□□□ -0.77
PTPRF-215ENST00000496447 C16orf74Q96GX8 76 aa10.26□□□□□ -0.77
PTPRF-215ENST00000496447 SOCS3O14543 225 aa10.26□□□□□ -0.77
PTPRF-215ENST00000496447 LTAP01374 205 aa10.26□□□□□ -0.77
PTPRF-215ENST00000496447 C1orf43Q9BWL3 253 aa10.26□□□□□ -0.77
PTPRF-215ENST00000496447 CCL18P55774 89 aa10.25□□□□□ -0.77
PTPRF-215ENST00000496447 C5orf56Q8N8D9 126 aa10.25□□□□□ -0.77
PTPRF-215ENST00000496447 CFHR4Q92496 578 aa10.25□□□□□ -0.77
PTPRF-215ENST00000496447 ATP5G1P05496 136 aa10.25□□□□□ -0.77
PTPRF-215ENST00000496447 ATP6V0E2Q8NHE4 81 aa10.25□□□□□ -0.77
PTPRF-215ENST00000496447 LENEPQ9Y5L5 61 aa10.25□□□□□ -0.77
PTPRF-215ENST00000496447 IGHV4OR15-8A0A075B7B6 117 aa10.25□□□□□ -0.77
PTPRF-215ENST00000496447 A0A087WW49 117 aa10.25□□□□□ -0.77
PTPRF-215ENST00000496447 ASPHD1Q5U4P2 390 aa10.25□□□□□ -0.77
PTPRF-215ENST00000496447 RITA1Q96K30 269 aa10.25□□□□□ -0.77
PTPRF-215ENST00000496447 SPRY4Q9C004 299 aa10.25□□□□□ -0.77
PTPRF-215ENST00000496447 ICOSQ9Y6W8 199 aa10.25□□□□□ -0.77
PTPRF-215ENST00000496447 TRAV25A0A0B4J276 109 aa10.25□□□□□ -0.77
PTPRF-215ENST00000496447 KRTAP27-1Q3LI81 207 aa10.25□□□□□ -0.77
PTPRF-215ENST00000496447 LINC01545Q5VT33 79 aa10.25□□□□□ -0.77
PTPRF-215ENST00000496447 PLA2G2EQ9NZK7 142 aa10.25□□□□□ -0.77
PTPRF-215ENST00000496447 ZFP36P26651 326 aaKnown RBP10.24□□□□□ -0.77
PTPRF-215ENST00000496447 PTPRQQ9UMZ3 2332 aa10.24□□□□□ -0.77
PTPRF-215ENST00000496447 F8VRH5 84 aa10.24□□□□□ -0.77
PTPRF-215ENST00000496447 TEN1Q86WV5 123 aa10.24□□□□□ -0.77
PTPRF-215ENST00000496447 RNF152Q8N8N0 203 aa10.24□□□□□ -0.77
PTPRF-215ENST00000496447 IGLV11-55A0A075B6I3 123 aa10.24□□□□□ -0.77
PTPRF-215ENST00000496447 TMEM258P61165 79 aa10.24□□□□□ -0.77
PTPRF-215ENST00000496447 MRPL23Q16540 153 aaKnown RBP10.24□□□□□ -0.77
PTPRF-215ENST00000496447 Q8N9W7 124 aa10.24□□□□□ -0.77
PTPRF-215ENST00000496447 MRPL35Q9NZE8 188 aaKnown RBP10.24□□□□□ -0.77
PTPRF-215ENST00000496447 MED13LQ71F56 2210 aa10.24□□□□□ -0.77
PTPRF-215ENST00000496447 WIPF3A6NGB9 483 aa10.23□□□□□ -0.77
PTPRF-215ENST00000496447 RBMY1FQ15415 496 aaKnown RBP10.23□□□□□ -0.77
PTPRF-215ENST00000496447 CARD19Q96LW7 228 aa10.23□□□□□ -0.77
PTPRF-215ENST00000496447 I3L2K1 104 aa10.23□□□□□ -0.77
PTPRF-215ENST00000496447 GYPEP15421 78 aa10.23□□□□□ -0.77
PTPRF-215ENST00000496447 CLPSL1A2RUU4 121 aa10.23□□□□□ -0.77
PTPRF-215ENST00000496447 FOXI1Q12951 378 aa10.23□□□□□ -0.77
PTPRF-215ENST00000496447 SUMO4Q6EEV6 95 aa10.23□□□□□ -0.77
PTPRF-215ENST00000496447 BDP1A6H8Y1 2624 aa10.23□□□□□ -0.77
PTPRF-215ENST00000496447 MYCNOSP40205 109 aa10.23□□□□□ -0.77
PTPRF-215ENST00000496447 EGR2P11161 476 aaPredicted RBP10.23□□□□□ -0.77
PTPRF-215ENST00000496447 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.22□□□□□ -0.77
PTPRF-215ENST00000496447 IGKV2-29A2NJV5 120 aaPredicted RBP10.22□□□□□ -0.77
PTPRF-215ENST00000496447 K7EIM0 57 aa10.22□□□□□ -0.77
PTPRF-215ENST00000496447 ZNF493Q6ZR52 646 aa10.22□□□□□ -0.77
PTPRF-215ENST00000496447 Q8NA96 180 aa10.22□□□□□ -0.77
PTPRF-215ENST00000496447 HIGD1BQ9P298 99 aa10.22□□□□□ -0.77
PTPRF-215ENST00000496447 PRORYQ9H606 182 aa10.22□□□□□ -0.77
PTPRF-215ENST00000496447 PKIGQ9Y2B9 76 aa10.22□□□□□ -0.77
PTPRF-215ENST00000496447 WFDC2Q14508 124 aa10.22□□□□□ -0.77
PTPRF-215ENST00000496447 PCP2Q8IVA1 136 aa10.22□□□□□ -0.77
PTPRF-215ENST00000496447 DKK2Q9UBU2 259 aa10.22□□□□□ -0.77
PTPRF-215ENST00000496447 CRLF1O75462 422 aa10.21□□□□□ -0.77
PTPRF-215ENST00000496447 FBXL19-AS1Q494R0 122 aa10.21□□□□□ -0.77
PTPRF-215ENST00000496447 NDUFC2O95298 119 aa10.21□□□□□ -0.77
PTPRF-215ENST00000496447 CTSGP08311 255 aa10.21□□□□□ -0.77
PTPRF-215ENST00000496447 HERV-K104P63124 156 aa10.21□□□□□ -0.77
PTPRF-215ENST00000496447 DENND4AQ7Z401 1863 aa10.21□□□□□ -0.77
PTPRF-215ENST00000496447 TTC28Q96AY4 2481 aa10.21□□□□□ -0.77
PTPRF-215ENST00000496447 C2orf70A6NJV1 201 aa10.2□□□□□ -0.78
PTPRF-215ENST00000496447 MORN5Q5VZ52 161 aa10.2□□□□□ -0.78
PTPRF-215ENST00000496447 F8W735 103 aaPredicted RBP10.2□□□□□ -0.78
PTPRF-215ENST00000496447 C16orf54Q6UWD8 224 aa10.2□□□□□ -0.78
PTPRF-215ENST00000496447 K7EQD1 137 aa10.2□□□□□ -0.78
PTPRF-215ENST00000496447 SPRY2O43597 315 aa10.2□□□□□ -0.78
PTPRF-215ENST00000496447 DOCK11Q5JSL3 2073 aa10.2□□□□□ -0.78
PTPRF-215ENST00000496447 TRAV13-2A0A0B4J235 113 aa10.2□□□□□ -0.78
PTPRF-215ENST00000496447 IGHV3-30P01768 117 aa10.2□□□□□ -0.78
PTPRF-215ENST00000496447 IGHV3-33P01772 117 aa10.2□□□□□ -0.78
PTPRF-215ENST00000496447 IGHV3-30-3P0DP02 117 aa10.2□□□□□ -0.78
PTPRF-215ENST00000496447 IGHV3-30-5P0DP03 117 aa10.2□□□□□ -0.78
PTPRF-215ENST00000496447 Q8N7P7 452 aa10.2□□□□□ -0.78
PTPRF-215ENST00000496447 J3QQQ9 107 aa10.2□□□□□ -0.78
PTPRF-215ENST00000496447 RPL18AQ02543 176 aaKnown RBP10.2□□□□□ -0.78
PTPRF-215ENST00000496447 C4orf3Q8WVX3 66 aa10.2□□□□□ -0.78
PTPRF-215ENST00000496447 UBL5Q9BZL1 73 aa10.19□□□□□ -0.78
PTPRF-215ENST00000496447 ATOX1O00244 68 aa10.19□□□□□ -0.78
PTPRF-215ENST00000496447 ESM1Q9NQ30 184 aa10.19□□□□□ -0.78
PTPRF-215ENST00000496447 SMAD5-AS1Q9Y6J3 95 aa10.19□□□□□ -0.78
PTPRF-215ENST00000496447 CFC1BP0CG36 223 aa10.19□□□□□ -0.78
PTPRF-215ENST00000496447 CFC1P0CG37 223 aa10.19□□□□□ -0.78
PTPRF-215ENST00000496447 BUB3O43684 328 aa10.18□□□□□ -0.78
PTPRF-215ENST00000496447 TECTAO75443 2155 aa10.18□□□□□ -0.78
PTPRF-215ENST00000496447 IGKV1-17P01599 117 aa10.18□□□□□ -0.78
PTPRF-215ENST00000496447 C5orf47Q569G3 176 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 102.1 ms