RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 RPL7P18124 248 aaKnown RBP0.02□□□□□ -2.41
SCN1A-206ENST00000491429 SRP9P49458 86 aaKnown RBP0.02□□□□□ -2.41
SCN1A-206ENST00000491429 RHOHQ15669 191 aa0.02□□□□□ -2.41
SCN1A-206ENST00000491429 IDO2Q6ZQW0 420 aa0.02□□□□□ -2.41
SCN1A-206ENST00000491429 DMAC1Q96GE9 116 aa0.02□□□□□ -2.41
SCN1A-206ENST00000491429 SPRR2GQ9BYE4 73 aa0.02□□□□□ -2.41
SCN1A-206ENST00000491429 MYCBP2O75592 4640 aa0.02□□□□□ -2.41
SCN1A-206ENST00000491429 TEX15Q9BXT5 2789 aa0.02□□□□□ -2.41
SCN1A-206ENST00000491429 LAMA5O15230 3695 aa0.02□□□□□ -2.41
SCN1A-206ENST00000491429 LRP1BQ9NZR2 4599 aa0.01□□□□□ -2.41
SCN1A-206ENST00000491429 FAM186AA6NE01 2351 aa0.01□□□□□ -2.41
SCN1A-206ENST00000491429 SVEP1Q4LDE5 3571 aa0.01□□□□□ -2.41
SCN1A-206ENST00000491429 TLN2Q9Y4G6 2542 aa0.01□□□□□ -2.41
SCN1A-206ENST00000491429 HBDP02042 147 aa0.01□□□□□ -2.41
SCN1A-206ENST00000491429 CKS2P33552 79 aa0.01□□□□□ -2.41
SCN1A-206ENST00000491429 POLR2HP52434 150 aaKnown RBP0.01□□□□□ -2.41
SCN1A-206ENST00000491429 LSM3P62310 102 aaKnown RBP0.01□□□□□ -2.41
SCN1A-206ENST00000491429 ATG5Q9H1Y0 275 aa0.01□□□□□ -2.41
SCN1A-206ENST00000491429 HRNRQ86YZ3 2850 aaPredicted RBP0.01□□□□□ -2.41
SCN1A-206ENST00000491429 ERCC6L2Q5T890 1561 aa0.01□□□□□ -2.41
SCN1A-206ENST00000491429 SPEGQ15772 3267 aa0.01□□□□□ -2.41
SCN1A-206ENST00000491429 SZT2Q5T011 3432 aa0.01□□□□□ -2.41
SCN1A-206ENST00000491429 MYO15AQ9UKN7 3530 aa0.01□□□□□ -2.41
SCN1A-206ENST00000491429 MYH3P11055 1940 aa0.01□□□□□ -2.41
SCN1A-206ENST00000491429 HECTD4Q9Y4D8 3996 aa0.01□□□□□ -2.41
SCN1A-206ENST00000491429 CEP295Q9C0D2 2601 aa0□□□□□ -2.41
SCN1A-206ENST00000491429 IGHV1-24A0A0C4DH33 117 aa0□□□□□ -2.41
SCN1A-206ENST00000491429 LAMA2P24043 3122 aaKnown RBP0□□□□□ -2.41
SCN1A-206ENST00000491429 ZFHX3Q15911 3703 aa0□□□□□ -2.41
SCN1A-206ENST00000491429 KIAA1549LQ6ZVL6 1849 aa0□□□□□ -2.41
SCN1A-206ENST00000491429 ANKRD31Q8N7Z5 1873 aa0□□□□□ -2.41
SCN1A-206ENST00000491429 OTOSQ8NHW6 89 aa0□□□□□ -2.41
SCN1A-206ENST00000491429 PCNX1Q96RV3 2341 aa0□□□□□ -2.41
SCN1A-206ENST00000491429 CEP250Q9BV73 2442 aa0□□□□□ -2.41
SCN1A-206ENST00000491429 PROK2Q9HC23 129 aa0□□□□□ -2.41
SCN1A-206ENST00000491429 TMEM14BQ9NUH8 114 aa0□□□□□ -2.41
SCN1A-206ENST00000491429 LYSTQ99698 3801 aa-0□□□□□ -2.41
SCN1A-206ENST00000491429 CUBNO60494 3623 aa-0□□□□□ -2.41
SCN1A-206ENST00000491429 CELSR2Q9HCU4 2923 aa-0□□□□□ -2.41
SCN1A-206ENST00000491429 ANK1P16157 1881 aa-0.01□□□□□ -2.41
SCN1A-206ENST00000491429 USP34Q70CQ2 3546 aa-0.01□□□□□ -2.41
SCN1A-206ENST00000491429 BRCA2P51587 3418 aa-0.01□□□□□ -2.41
SCN1A-206ENST00000491429 A2MP01023 1474 aa-0.01□□□□□ -2.41
SCN1A-206ENST00000491429 DNAH7Q8WXX0 4024 aa-0.01□□□□□ -2.41
SCN1A-206ENST00000491429 CCKP06307 115 aa-0.01□□□□□ -2.41
SCN1A-206ENST00000491429 KLKP1Q107X0 134 aa-0.01□□□□□ -2.41
SCN1A-206ENST00000491429 UNQ5815/PRO19632Q6UWF5 114 aa-0.01□□□□□ -2.41
SCN1A-206ENST00000491429 OR5A2Q8NGI9 324 aa-0.01□□□□□ -2.41
SCN1A-206ENST00000491429 NAT14Q8WUY8 206 aa-0.01□□□□□ -2.41
SCN1A-206ENST00000491429 LRP1Q07954 4544 aaKnown RBP-0.01□□□□□ -2.41
SCN1A-206ENST00000491429 NBEAQ8NFP9 2946 aa-0.01□□□□□ -2.41
SCN1A-206ENST00000491429 PIEZO2Q9H5I5 2752 aa-0.01□□□□□ -2.41
SCN1A-206ENST00000491429 TNXBP22105 4242 aa-0.02□□□□□ -2.41
SCN1A-206ENST00000491429 CEP350Q5VT06 3117 aa-0.02□□□□□ -2.41
SCN1A-206ENST00000491429 ZCCHC6Q5VYS8 1495 aaKnown RBP-0.02□□□□□ -2.41
SCN1A-206ENST00000491429 HSPG2P98160 4391 aa-0.02□□□□□ -2.41
SCN1A-206ENST00000491429 WDR87Q6ZQQ6 2873 aa-0.02□□□□□ -2.41
SCN1A-206ENST00000491429 CPDO75976 1380 aa-0.02□□□□□ -2.41
SCN1A-206ENST00000491429 FABP1P07148 127 aa-0.02□□□□□ -2.41
SCN1A-206ENST00000491429 RPL22P35268 128 aaKnown RBP-0.02□□□□□ -2.41
SCN1A-206ENST00000491429 PCBD1P61457 104 aa-0.02□□□□□ -2.41
SCN1A-206ENST00000491429 KRTAP19-6Q3LI70 58 aa-0.02□□□□□ -2.41
SCN1A-206ENST00000491429 VMO1Q7Z5L0 202 aa-0.02□□□□□ -2.41
SCN1A-206ENST00000491429 NUP210Q8TEM1 1887 aaPredicted RBP-0.02□□□□□ -2.41
SCN1A-206ENST00000491429 MUC3AQ02505 3323 aa-0.02□□□□□ -2.41
SCN1A-206ENST00000491429 CFAP47Q6ZTR5 3102 aa-0.02□□□□□ -2.41
SCN1A-206ENST00000491429 CEP290O15078 2479 aa-0.03□□□□□ -2.41
SCN1A-206ENST00000491429 SPTAN1Q13813 2472 aaKnown RBP-0.03□□□□□ -2.41
SCN1A-206ENST00000491429 CDK12Q9NYV4 1490 aaPredicted RBP-0.03□□□□□ -2.41
SCN1A-206ENST00000491429 PDE4DIPQ5VU43 2346 aa-0.03□□□□□ -2.41
SCN1A-206ENST00000491429 EYSQ5T1H1 3165 aa-0.03□□□□□ -2.41
SCN1A-206ENST00000491429 RBBP6Q7Z6E9 1792 aaKnown RBP-0.03□□□□□ -2.41
SCN1A-206ENST00000491429 SIPA1L2Q9P2F8 1722 aaPredicted RBP-0.03□□□□□ -2.41
SCN1A-206ENST00000491429 A0A1B0GV72 72 aa-0.03□□□□□ -2.41
SCN1A-206ENST00000491429 UQCRQO14949 82 aa-0.03□□□□□ -2.41
SCN1A-206ENST00000491429 TFF1P04155 84 aa-0.03□□□□□ -2.41
SCN1A-206ENST00000491429 SLC25A5P05141 298 aaKnown RBP-0.03□□□□□ -2.41
SCN1A-206ENST00000491429 MPC1LP0DKB6 136 aa-0.03□□□□□ -2.41
SCN1A-206ENST00000491429 ADCYAP1P18509 176 aa-0.03□□□□□ -2.41
SCN1A-206ENST00000491429 MT4P47944 62 aa-0.03□□□□□ -2.41
SCN1A-206ENST00000491429 POLR2JP52435 117 aaKnown RBP-0.03□□□□□ -2.41
SCN1A-206ENST00000491429 SAMD13Q5VXD3 122 aa-0.03□□□□□ -2.41
SCN1A-206ENST00000491429 OR9Q1Q8NGQ5 310 aa-0.03□□□□□ -2.41
SCN1A-206ENST00000491429 CCDC115Q96NT0 180 aa-0.03□□□□□ -2.41
SCN1A-206ENST00000491429 V9GYQ6 96 aa-0.03□□□□□ -2.41
SCN1A-206ENST00000491429 KDM5AP29375 1690 aaKnown RBP-0.03□□□□□ -2.41
SCN1A-206ENST00000491429 ITPR2Q14571 2701 aa-0.03□□□□□ -2.41
SCN1A-206ENST00000491429 VPS13CQ709C8 3753 aa-0.03□□□□□ -2.41
SCN1A-206ENST00000491429 TACC2O95359 2948 aa-0.03□□□□□ -2.42
SCN1A-206ENST00000491429 A0A0C4DFX4 3053 aa-0.04□□□□□ -2.42
SCN1A-206ENST00000491429 TPRP12270 2363 aaKnown RBP-0.04□□□□□ -2.42
SCN1A-206ENST00000491429 ANK2Q01484 3957 aa-0.04□□□□□ -2.42
SCN1A-206ENST00000491429 KDM6BO15054 1643 aa-0.04□□□□□ -2.42
SCN1A-206ENST00000491429 RANBP2P49792 3224 aaKnown RBP-0.04□□□□□ -2.42
SCN1A-206ENST00000491429 A0A096LNT2 108 aa-0.04□□□□□ -2.42
SCN1A-206ENST00000491429 TRAV17A0A0B4J275 112 aa-0.04□□□□□ -2.42
SCN1A-206ENST00000491429 SPINK1P00995 79 aa-0.04□□□□□ -2.42
SCN1A-206ENST00000491429 IFNA21P01568 189 aa-0.04□□□□□ -2.42
SCN1A-206ENST00000491429 TCRAP04437 139 aa-0.04□□□□□ -2.42
SCN1A-206ENST00000491429 TMEM128Q5BJH2 165 aa-0.04□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms