RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-212	ENST00000488896	ZCCHC6	Q5VYS8	1495 aa	Known RBP	0.31	□□□□□ -2.36
PTPN4-212	ENST00000488896	FAM236A	A0A1B0GUQ0	79 aa		0.31	□□□□□ -2.36
PTPN4-212	ENST00000488896	FAM236B	A0A1B0GV22	79 aa		0.31	□□□□□ -2.36
PTPN4-212	ENST00000488896		J3QLW9	94 aa		0.31	□□□□□ -2.36
PTPN4-212	ENST00000488896	YPEL1	O60688	119 aa		0.31	□□□□□ -2.36
PTPN4-212	ENST00000488896	IGLC6	P0CF74	106 aa		0.31	□□□□□ -2.36
PTPN4-212	ENST00000488896	MPC1L	P0DKB6	136 aa		0.31	□□□□□ -2.36
PTPN4-212	ENST00000488896	LINC00694	P0DN24	101 aa		0.31	□□□□□ -2.36
PTPN4-212	ENST00000488896	ELOF1	P60002	83 aa	Known RBP	0.31	□□□□□ -2.36
PTPN4-212	ENST00000488896	KLKP1	Q107X0	134 aa		0.31	□□□□□ -2.36
PTPN4-212	ENST00000488896	MIC13	Q5XKP0	118 aa		0.31	□□□□□ -2.36
PTPN4-212	ENST00000488896	C10orf99	Q6UWK7	81 aa		0.31	□□□□□ -2.36
PTPN4-212	ENST00000488896	SPINK6	Q6UWN8	80 aa		0.31	□□□□□ -2.36
PTPN4-212	ENST00000488896	ATP11AUN	Q6ZP68	121 aa		0.31	□□□□□ -2.36
PTPN4-212	ENST00000488896	CYP2G1P	Q6ZSU1	146 aa		0.31	□□□□□ -2.36
PTPN4-212	ENST00000488896	ATP6V0E2	Q8NHE4	81 aa		0.31	□□□□□ -2.36
PTPN4-212	ENST00000488896	PPDPFL	Q8WWR9	84 aa		0.31	□□□□□ -2.36
PTPN4-212	ENST00000488896	LSM2	Q9Y333	95 aa	Known RBP	0.31	□□□□□ -2.36
PTPN4-212	ENST00000488896	TNC	P24821	2201 aa		0.31	□□□□□ -2.36
PTPN4-212	ENST00000488896	ABCA4	P78363	2273 aa		0.31	□□□□□ -2.36
PTPN4-212	ENST00000488896	AFDN	P55196	1824 aa	Known RBP	0.31	□□□□□ -2.36
PTPN4-212	ENST00000488896	XIRP1	Q702N8	1843 aa	Known RBP	0.31	□□□□□ -2.36
PTPN4-212	ENST00000488896	CACNA1E	Q15878	2313 aa		0.31	□□□□□ -2.36
PTPN4-212	ENST00000488896	CPD	O75976	1380 aa		0.31	□□□□□ -2.36
PTPN4-212	ENST00000488896	CDK5RAP2	Q96SN8	1893 aa		0.31	□□□□□ -2.36
PTPN4-212	ENST00000488896	ADGB	Q8N7X0	1667 aa		0.3	□□□□□ -2.36
PTPN4-212	ENST00000488896	TEX49	A0A1B0GTD5	131 aa		0.3	□□□□□ -2.36
PTPN4-212	ENST00000488896	CXorf51A	A0A1B0GTR3	108 aa		0.3	□□□□□ -2.36
PTPN4-212	ENST00000488896	SNCG	O76070	127 aa		0.3	□□□□□ -2.36
PTPN4-212	ENST00000488896	COX4I1	P13073	169 aa		0.3	□□□□□ -2.36
PTPN4-212	ENST00000488896	RPL37	P61927	97 aa	Known RBP	0.3	□□□□□ -2.36
PTPN4-212	ENST00000488896	S100A7L2	Q5SY68	101 aa		0.3	□□□□□ -2.36
PTPN4-212	ENST00000488896	C4orf33	Q8N1A6	199 aa		0.3	□□□□□ -2.36
PTPN4-212	ENST00000488896	PLAC8	Q9NZF1	115 aa		0.3	□□□□□ -2.36
PTPN4-212	ENST00000488896	ERG28	Q9UKR5	140 aa		0.3	□□□□□ -2.36
PTPN4-212	ENST00000488896	TRPM1	Q7Z4N2	1603 aa		0.3	□□□□□ -2.36
PTPN4-212	ENST00000488896	MED13L	Q71F56	2210 aa		0.3	□□□□□ -2.36
PTPN4-212	ENST00000488896	BCORL1	Q5H9F3	1711 aa		0.3	□□□□□ -2.36
PTPN4-212	ENST00000488896	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	0.3	□□□□□ -2.36
PTPN4-212	ENST00000488896	KIAA1549L	Q6ZVL6	1849 aa		0.29	□□□□□ -2.36
PTPN4-212	ENST00000488896	MYO7A	Q13402	2215 aa		0.29	□□□□□ -2.36
PTPN4-212	ENST00000488896	SYNJ1	O43426	1573 aa		0.29	□□□□□ -2.36
PTPN4-212	ENST00000488896	MYH13	Q9UKX3	1938 aa		0.29	□□□□□ -2.36
PTPN4-212	ENST00000488896	TRBV20-1	A0A075B6N2	111 aa		0.29	□□□□□ -2.36
PTPN4-212	ENST00000488896	LOC105371267	A0A1B0GV96	52 aa		0.29	□□□□□ -2.36
PTPN4-212	ENST00000488896	RBAKDN	A6NC62	111 aa		0.29	□□□□□ -2.36
PTPN4-212	ENST00000488896	PIRT	P0C851	137 aa		0.29	□□□□□ -2.36
PTPN4-212	ENST00000488896	PYY	P10082	97 aa		0.29	□□□□□ -2.36
PTPN4-212	ENST00000488896	RRAS2	P62070	204 aa	Predicted RBP	0.29	□□□□□ -2.36
PTPN4-212	ENST00000488896	UBE2G1	P62253	170 aa		0.29	□□□□□ -2.36
PTPN4-212	ENST00000488896	OR2T2	Q6IF00	324 aa		0.29	□□□□□ -2.36
PTPN4-212	ENST00000488896	C20orf197	Q8N268	126 aa		0.29	□□□□□ -2.36
PTPN4-212	ENST00000488896	PRR15L	Q9BU68	103 aa		0.29	□□□□□ -2.36
PTPN4-212	ENST00000488896	TPT1P8	Q9HAU6	139 aa		0.29	□□□□□ -2.36
PTPN4-212	ENST00000488896	SAR1A	Q9NR31	198 aa		0.29	□□□□□ -2.36
PTPN4-212	ENST00000488896	COPZ2	Q9P299	210 aa		0.29	□□□□□ -2.36
PTPN4-212	ENST00000488896	NDUFA12	Q9UI09	145 aa		0.29	□□□□□ -2.36
PTPN4-212	ENST00000488896	ARHGEF10	O15013	1369 aa		0.29	□□□□□ -2.36
PTPN4-212	ENST00000488896	CTTNBP2	Q8WZ74	1663 aa		0.28	□□□□□ -2.36
PTPN4-212	ENST00000488896	TRAV12-2	A0A075B6T6	113 aa		0.28	□□□□□ -2.36
PTPN4-212	ENST00000488896	TRBV7-1	A0A0A6YYK4	115 aa		0.28	□□□□□ -2.36
PTPN4-212	ENST00000488896	TRAV12-3	A0A0B4J271	114 aa		0.28	□□□□□ -2.36
PTPN4-212	ENST00000488896	FAM92A	A1XBS5	289 aa		0.28	□□□□□ -2.36
PTPN4-212	ENST00000488896		M0R2P5	195 aa		0.28	□□□□□ -2.36
PTPN4-212	ENST00000488896	PRH1	P02810	166 aa		0.28	□□□□□ -2.36
PTPN4-212	ENST00000488896	NPC2	P61916	151 aa		0.28	□□□□□ -2.36
PTPN4-212	ENST00000488896	COPZ1	P61923	177 aa		0.28	□□□□□ -2.36
PTPN4-212	ENST00000488896	SMCO1	Q147U7	214 aa		0.28	□□□□□ -2.36
PTPN4-212	ENST00000488896	SPCS2	Q15005	226 aa		0.28	□□□□□ -2.36
PTPN4-212	ENST00000488896	FAM74A4	Q5TZK3	123 aa		0.28	□□□□□ -2.36
PTPN4-212	ENST00000488896	DEFB132	Q7Z7B7	95 aa		0.28	□□□□□ -2.36
PTPN4-212	ENST00000488896	KCNRG	Q8N5I3	272 aa		0.28	□□□□□ -2.36
PTPN4-212	ENST00000488896	SPTSSB	Q8NFR3	76 aa		0.28	□□□□□ -2.36
PTPN4-212	ENST00000488896	PFDN5	Q99471	154 aa		0.28	□□□□□ -2.36
PTPN4-212	ENST00000488896	RPRM	Q9NS64	109 aa		0.28	□□□□□ -2.36
PTPN4-212	ENST00000488896	TMEM242	Q9NWH2	141 aa		0.28	□□□□□ -2.36
PTPN4-212	ENST00000488896		V9GYV3	84 aa		0.28	□□□□□ -2.36
PTPN4-212	ENST00000488896	CCDC171	Q6TFL3	1326 aa		0.28	□□□□□ -2.36
PTPN4-212	ENST00000488896	ARHGAP31	Q2M1Z3	1444 aa		0.28	□□□□□ -2.37
PTPN4-212	ENST00000488896	LRP5	O75197	1615 aa		0.27	□□□□□ -2.37
PTPN4-212	ENST00000488896	USP54	Q70EL1	1684 aa		0.27	□□□□□ -2.37
PTPN4-212	ENST00000488896	RBBP6	Q7Z6E9	1792 aa	Known RBP	0.27	□□□□□ -2.37
PTPN4-212	ENST00000488896	TRAV2	A0A0B4J234	112 aa		0.27	□□□□□ -2.37
PTPN4-212	ENST00000488896	CCDC179	H3BU77	68 aa		0.27	□□□□□ -2.37
PTPN4-212	ENST00000488896	IL5	P05113	134 aa		0.27	□□□□□ -2.37
PTPN4-212	ENST00000488896	ACYP2	P14621	99 aa		0.27	□□□□□ -2.37
PTPN4-212	ENST00000488896	SSBP1	Q04837	148 aa	Known RBP	0.27	□□□□□ -2.37
PTPN4-212	ENST00000488896	MORN2	Q502X0	79 aa		0.27	□□□□□ -2.37
PTPN4-212	ENST00000488896	SPANXN1	Q5VSR9	72 aa		0.27	□□□□□ -2.37
PTPN4-212	ENST00000488896	LINC01545	Q5VT33	79 aa		0.27	□□□□□ -2.37
PTPN4-212	ENST00000488896	VMO1	Q7Z5L0	202 aa		0.27	□□□□□ -2.37
PTPN4-212	ENST00000488896	COX7B2	Q8TF08	81 aa		0.27	□□□□□ -2.37
PTPN4-212	ENST00000488896	ANP32B	Q92688	251 aa	Known RBP	0.27	□□□□□ -2.37
PTPN4-212	ENST00000488896	SPTSSA	Q969W0	71 aa		0.27	□□□□□ -2.37
PTPN4-212	ENST00000488896	SMR3A	Q99954	134 aa		0.27	□□□□□ -2.37
PTPN4-212	ENST00000488896	NAV3	Q8IVL0	2385 aa		0.27	□□□□□ -2.37
PTPN4-212	ENST00000488896	KIDINS220	Q9ULH0	1771 aa		0.27	□□□□□ -2.37
PTPN4-212	ENST00000488896	KIF13A	Q9H1H9	1805 aa		0.27	□□□□□ -2.37
PTPN4-212	ENST00000488896	SMIM6	P0DI80	62 aa		0.26	□□□□□ -2.37
PTPN4-212	ENST00000488896	PIP	P12273	146 aa	Predicted RBP	0.26	□□□□□ -2.37

Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms