RNA–Protein interactions for RNA: ENST00000488250.5

RAPGEF3-211, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 2

Gene RAPGEF3, Length 1,947 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-211ENST00000488250 IGLL1P15814 213 aa11.92□□□□□ -0.5
RAPGEF3-211ENST00000488250 GATA1P15976 413 aaPredicted RBP11.92□□□□□ -0.5
RAPGEF3-211ENST00000488250 FAM159AQ6UWV7 190 aa11.92□□□□□ -0.5
RAPGEF3-211ENST00000488250 LURAP1LQ8IV03 231 aa11.92□□□□□ -0.5
RAPGEF3-211ENST00000488250 OR9G4Q8NGQ1 327 aa11.92□□□□□ -0.5
RAPGEF3-211ENST00000488250 TSPOP30536 169 aa11.92□□□□□ -0.5
RAPGEF3-211ENST00000488250 DPH3P1Q9H4G8 78 aa11.92□□□□□ -0.5
RAPGEF3-211ENST00000488250 ST20Q9HBF5 79 aa11.92□□□□□ -0.5
RAPGEF3-211ENST00000488250 ESM1Q9NQ30 184 aa11.92□□□□□ -0.5
RAPGEF3-211ENST00000488250 TIMM8BQ9Y5J9 83 aaPredicted RBP11.92□□□□□ -0.5
RAPGEF3-211ENST00000488250 MYO9AB2RTY4 2548 aa11.91□□□□□ -0.5
RAPGEF3-211ENST00000488250 TLN2Q9Y4G6 2542 aa11.91□□□□□ -0.5
RAPGEF3-211ENST00000488250 M0R381 172 aa11.91□□□□□ -0.5
RAPGEF3-211ENST00000488250 EREGO14944 169 aa11.91□□□□□ -0.5
RAPGEF3-211ENST00000488250 FCER1GP30273 86 aa11.91□□□□□ -0.5
RAPGEF3-211ENST00000488250 POM121L12Q8N7R1 296 aa11.91□□□□□ -0.5
RAPGEF3-211ENST00000488250 CDKN1BP46527 198 aa11.9□□□□□ -0.5
RAPGEF3-211ENST00000488250 KLHL30-AS1Q8NEE0 82 aa11.9□□□□□ -0.51
RAPGEF3-211ENST00000488250 YAE1D1Q9NRH1 226 aa11.9□□□□□ -0.51
RAPGEF3-211ENST00000488250 TRAV12-3A0A0B4J271 114 aa11.89□□□□□ -0.51
RAPGEF3-211ENST00000488250 A8MTW9 85 aa11.89□□□□□ -0.51
RAPGEF3-211ENST00000488250 SCGB2A2Q13296 93 aa11.89□□□□□ -0.51
RAPGEF3-211ENST00000488250 LGALS9BQ3B8N2 356 aa11.89□□□□□ -0.51
RAPGEF3-211ENST00000488250 LGALS9CQ6DKI2 356 aa11.89□□□□□ -0.51
RAPGEF3-211ENST00000488250 AMTNQ6UX39 209 aa11.89□□□□□ -0.51
RAPGEF3-211ENST00000488250 AP1S3Q96PC3 154 aa11.89□□□□□ -0.51
RAPGEF3-211ENST00000488250 SETXQ7Z333 2677 aaKnown RBP11.88□□□□□ -0.51
RAPGEF3-211ENST00000488250 TRAV26-2A0A0B4J265 109 aa11.88□□□□□ -0.51
RAPGEF3-211ENST00000488250 DLX4Q92988 240 aaPredicted RBP11.88□□□□□ -0.51
RAPGEF3-211ENST00000488250 IFI27L1Q96BM0 104 aa11.88□□□□□ -0.51
RAPGEF3-211ENST00000488250 HSBP1L1C9JCN9 74 aa11.88□□□□□ -0.51
RAPGEF3-211ENST00000488250 RNASE1P07998 156 aaKnown RBP11.88□□□□□ -0.51
RAPGEF3-211ENST00000488250 KHDC1LQ5JSQ8 128 aa11.88□□□□□ -0.51
RAPGEF3-211ENST00000488250 Q6ZN92 141 aa11.88□□□□□ -0.51
RAPGEF3-211ENST00000488250 C14orf178Q8N769 122 aaPredicted RBP11.87□□□□□ -0.51
RAPGEF3-211ENST00000488250 C9orf85Q96MD7 179 aa11.87□□□□□ -0.51
RAPGEF3-211ENST00000488250 C20orf78Q9BR46 151 aa11.87□□□□□ -0.51
RAPGEF3-211ENST00000488250 C16orf95Q9H693 158 aa11.87□□□□□ -0.51
RAPGEF3-211ENST00000488250 TMEM160Q9NX00 188 aa11.87□□□□□ -0.51
RAPGEF3-211ENST00000488250 MRPS16Q9Y3D3 137 aaKnown RBP11.87□□□□□ -0.51
RAPGEF3-211ENST00000488250 KIF25-AS1Q9Y6Z4 181 aa11.87□□□□□ -0.51
RAPGEF3-211ENST00000488250 hDV102S1A0JD36 115 aa11.86□□□□□ -0.51
RAPGEF3-211ENST00000488250 H0Y8G0 127 aa11.86□□□□□ -0.51
RAPGEF3-211ENST00000488250 PPP1R17O96001 155 aa11.86□□□□□ -0.51
RAPGEF3-211ENST00000488250 CD7P09564 240 aa11.86□□□□□ -0.51
RAPGEF3-211ENST00000488250 HNRNPA3P51991 378 aaKnown RBP11.86□□□□□ -0.51
RAPGEF3-211ENST00000488250 FXYD7P58549 80 aa11.86□□□□□ -0.51
RAPGEF3-211ENST00000488250 MCRIP2Q9BUT9 160 aaKnown RBP11.86□□□□□ -0.51
RAPGEF3-211ENST00000488250 OTOGQ6ZRI0 2925 aa11.86□□□□□ -0.51
RAPGEF3-211ENST00000488250 IGHV3-16A0A0C4DH30 117 aa11.86□□□□□ -0.51
RAPGEF3-211ENST00000488250 K7EMI3 77 aa11.86□□□□□ -0.51
RAPGEF3-211ENST00000488250 SPRY2O43597 315 aa11.86□□□□□ -0.51
RAPGEF3-211ENST00000488250 FHL3Q13643 280 aa11.86□□□□□ -0.51
RAPGEF3-211ENST00000488250 LAGE3Q14657 143 aa11.86□□□□□ -0.51
RAPGEF3-211ENST00000488250 TMEM61Q8N0U2 210 aa11.86□□□□□ -0.51
RAPGEF3-211ENST00000488250 RASL10AQ92737 203 aa11.86□□□□□ -0.51
RAPGEF3-211ENST00000488250 DUX3Q96PT4 197 aa11.86□□□□□ -0.51
RAPGEF3-211ENST00000488250 SONP18583 2426 aaKnown RBP11.85□□□□□ -0.51
RAPGEF3-211ENST00000488250 IGHV1OR15-1A0A075B7D0 117 aa11.85□□□□□ -0.51
RAPGEF3-211ENST00000488250 IGKV3-20P01619 116 aa11.85□□□□□ -0.51
RAPGEF3-211ENST00000488250 HLA-DRB4P13762 266 aa11.85□□□□□ -0.51
RAPGEF3-211ENST00000488250 LINC00315P59091 139 aa11.85□□□□□ -0.51
RAPGEF3-211ENST00000488250 SPINK13Q1W4C9 94 aa11.85□□□□□ -0.51
RAPGEF3-211ENST00000488250 DEFB114Q30KQ6 69 aa11.85□□□□□ -0.51
RAPGEF3-211ENST00000488250 SMIM2Q9BVW6 85 aa11.85□□□□□ -0.51
RAPGEF3-211ENST00000488250 GOLT1BQ9Y3E0 138 aa11.85□□□□□ -0.51
RAPGEF3-211ENST00000488250 HLA-DRB4X5D2U9 266 aa11.85□□□□□ -0.51
RAPGEF3-211ENST00000488250 TRAV12-2A0A075B6T6 113 aa11.84□□□□□ -0.51
RAPGEF3-211ENST00000488250 RAX2Q96IS3 184 aa11.84□□□□□ -0.51
RAPGEF3-211ENST00000488250 A0A1B0GV90 55 aa11.84□□□□□ -0.51
RAPGEF3-211ENST00000488250 DEFB131AP59861 70 aa11.84□□□□□ -0.51
RAPGEF3-211ENST00000488250 SUMO2P61956 95 aaKnown RBP11.84□□□□□ -0.51
RAPGEF3-211ENST00000488250 DYNLRB2Q8TF09 96 aa11.84□□□□□ -0.51
RAPGEF3-211ENST00000488250 TMEM158Q8WZ71 300 aa11.84□□□□□ -0.51
RAPGEF3-211ENST00000488250 PMCHL2Q9BQD1 86 aa11.84□□□□□ -0.51
RAPGEF3-211ENST00000488250 H3BMM0 161 aa11.83□□□□□ -0.52
RAPGEF3-211ENST00000488250 TRAV25A0A0B4J276 109 aa11.82□□□□□ -0.52
RAPGEF3-211ENST00000488250 RPL32P62910 135 aaKnown RBP11.82□□□□□ -0.52
RAPGEF3-211ENST00000488250 Q8N1Y9 231 aa11.82□□□□□ -0.52
RAPGEF3-211ENST00000488250 LINC01006Q8NI28 216 aa11.82□□□□□ -0.52
RAPGEF3-211ENST00000488250 MUC4Q99102 2169 aa11.82□□□□□ -0.52
RAPGEF3-211ENST00000488250 KNCNA6PVL3 124 aa11.82□□□□□ -0.52
RAPGEF3-211ENST00000488250 ATP5LO75964 103 aa11.82□□□□□ -0.52
RAPGEF3-211ENST00000488250 MGPP08493 103 aa11.82□□□□□ -0.52
RAPGEF3-211ENST00000488250 SMIM17P0DL12 118 aa11.82□□□□□ -0.52
RAPGEF3-211ENST00000488250 NUTF2P61970 127 aaKnown RBP11.82□□□□□ -0.52
RAPGEF3-211ENST00000488250 SYT8Q8NBV8 401 aa11.82□□□□□ -0.52
RAPGEF3-211ENST00000488250 SPAG8Q99932 426 aaPredicted RBP11.82□□□□□ -0.52
RAPGEF3-211ENST00000488250 CD28P10747 220 aa11.81□□□□□ -0.52
RAPGEF3-211ENST00000488250 ORMDL2Q53FV1 153 aa11.81□□□□□ -0.52
RAPGEF3-211ENST00000488250 MDFICQ9P1T7 246 aa11.81□□□□□ -0.52
RAPGEF3-211ENST00000488250 TSSC4Q9Y5U2 329 aaPredicted RBP11.81□□□□□ -0.52
RAPGEF3-211ENST00000488250 TRGV11A0A075B6L2 103 aa11.8□□□□□ -0.52
RAPGEF3-211ENST00000488250 CCL24O00175 119 aa11.8□□□□□ -0.52
RAPGEF3-211ENST00000488250 HILS1P60008 231 aa11.8□□□□□ -0.52
RAPGEF3-211ENST00000488250 SLC25A34Q6PIV7 304 aa11.8□□□□□ -0.52
RAPGEF3-211ENST00000488250 ZNF418Q8TF45 676 aaPredicted RBP11.8□□□□□ -0.52
RAPGEF3-211ENST00000488250 RPL39LQ96EH5 51 aaKnown RBP11.8□□□□□ -0.52
RAPGEF3-211ENST00000488250 C18orf15Q96N68 181 aa11.8□□□□□ -0.52
RAPGEF3-211ENST00000488250 MAP6D1Q9H9H5 199 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms