RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 Q6ZS46 218 aa4.8□□□□□ -1.64
VPS13D-209ENST00000487188 CHCHD5Q9BSY4 110 aa4.8□□□□□ -1.64
VPS13D-209ENST00000487188 AGPAT4-IT1Q9H0P7 198 aa4.8□□□□□ -1.64
VPS13D-209ENST00000487188 ECSCRQ19T08 205 aa4.8□□□□□ -1.64
VPS13D-209ENST00000487188 FDCSPQ8NFU4 85 aa4.8□□□□□ -1.64
VPS13D-209ENST00000487188 TRBV10-2A0A0K0K1G8 114 aa4.8□□□□□ -1.64
VPS13D-209ENST00000487188 IGHV3-30P01768 117 aa4.8□□□□□ -1.64
VPS13D-209ENST00000487188 IGHV3-30-5P0DP03 117 aa4.8□□□□□ -1.64
VPS13D-209ENST00000487188 COX8CQ7Z4L0 72 aa4.8□□□□□ -1.64
VPS13D-209ENST00000487188 SBSPONQ8IVN8 264 aa4.8□□□□□ -1.64
VPS13D-209ENST00000487188 RNF5Q99942 180 aa4.8□□□□□ -1.64
VPS13D-209ENST00000487188 FAM236AA0A1B0GUQ0 79 aa4.79□□□□□ -1.64
VPS13D-209ENST00000487188 FAM236BA0A1B0GV22 79 aa4.79□□□□□ -1.64
VPS13D-209ENST00000487188 RPL11P62913 178 aaKnown RBP4.79□□□□□ -1.64
VPS13D-209ENST00000487188 ADIPOQQ15848 244 aa4.79□□□□□ -1.64
VPS13D-209ENST00000487188 M0R2P5 195 aa4.79□□□□□ -1.64
VPS13D-209ENST00000487188 IGHV3-33P01772 117 aa4.79□□□□□ -1.64
VPS13D-209ENST00000487188 SLC25A29Q8N8R3 303 aa4.79□□□□□ -1.64
VPS13D-209ENST00000487188 METTL26Q96S19 204 aa4.79□□□□□ -1.64
VPS13D-209ENST00000487188 VPREB3Q9UKI3 123 aa4.79□□□□□ -1.64
VPS13D-209ENST00000487188 PRRC2CQ9Y520 2896 aaKnown RBP4.79□□□□□ -1.64
VPS13D-209ENST00000487188 M0QXV9 152 aa4.79□□□□□ -1.64
VPS13D-209ENST00000487188 C11orf21Q9P2W6 132 aa4.79□□□□□ -1.64
VPS13D-209ENST00000487188 ZFHX2Q9C0A1 2572 aaPredicted RBP4.78□□□□□ -1.64
VPS13D-209ENST00000487188 PRR30Q53SZ7 412 aaPredicted RBP4.78□□□□□ -1.64
VPS13D-209ENST00000487188 PLA2G2CQ5R387 149 aa4.78□□□□□ -1.64
VPS13D-209ENST00000487188 MUSTN1Q8IVN3 82 aa4.78□□□□□ -1.64
VPS13D-209ENST00000487188 DPM3Q9P2X0 92 aa4.78□□□□□ -1.64
VPS13D-209ENST00000487188 TRAV21A0A0B4J279 112 aa4.78□□□□□ -1.64
VPS13D-209ENST00000487188 RBAKDNA6NC62 111 aa4.78□□□□□ -1.64
VPS13D-209ENST00000487188 LGALS9O00182 355 aa4.78□□□□□ -1.64
VPS13D-209ENST00000487188 PPDPFQ9H3Y8 114 aa4.78□□□□□ -1.64
VPS13D-209ENST00000487188 PCNX1Q96RV3 2341 aa4.78□□□□□ -1.64
VPS13D-209ENST00000487188 NBEAQ8NFP9 2946 aa4.78□□□□□ -1.64
VPS13D-209ENST00000487188 IGLV11-55A0A075B6I3 123 aa4.78□□□□□ -1.64
VPS13D-209ENST00000487188 MBD3L4A6NDZ8 208 aaPredicted RBP4.78□□□□□ -1.64
VPS13D-209ENST00000487188 MBD3L3A6NE82 208 aaPredicted RBP4.78□□□□□ -1.64
VPS13D-209ENST00000487188 MBD3L5A6NJ08 208 aaPredicted RBP4.78□□□□□ -1.64
VPS13D-209ENST00000487188 P0DMU3 169 aa4.78□□□□□ -1.64
VPS13D-209ENST00000487188 FAM231AP0DMU4 169 aa4.78□□□□□ -1.64
VPS13D-209ENST00000487188 FAM231CP0DMU5 169 aa4.78□□□□□ -1.64
VPS13D-209ENST00000487188 NPC2P61916 151 aa4.78□□□□□ -1.64
VPS13D-209ENST00000487188 DEFB109BQ30KR1 87 aa4.78□□□□□ -1.64
VPS13D-209ENST00000487188 MBD3L2Q8NHZ7 208 aaPredicted RBP4.78□□□□□ -1.64
VPS13D-209ENST00000487188 TMEM141Q96I45 108 aa4.78□□□□□ -1.64
VPS13D-209ENST00000487188 DUX3Q96PT4 197 aa4.78□□□□□ -1.64
VPS13D-209ENST00000487188 SMAD5-AS1Q9Y6J3 95 aa4.78□□□□□ -1.64
VPS13D-209ENST00000487188 TRAV8-3A0A0A6YYJ7 113 aa4.77□□□□□ -1.65
VPS13D-209ENST00000487188 A0A0B4J2C4 111 aa4.77□□□□□ -1.65
VPS13D-209ENST00000487188 IGHV1-69DA0A0B4J2H0 117 aa4.77□□□□□ -1.65
VPS13D-209ENST00000487188 IGHV7-4-1A0A0J9YVY3 117 aa4.77□□□□□ -1.65
VPS13D-209ENST00000487188 COX6B1P14854 86 aa4.77□□□□□ -1.65
VPS13D-209ENST00000487188 BSPH1Q075Z2 132 aa4.77□□□□□ -1.65
VPS13D-209ENST00000487188 MRPL23Q16540 153 aaKnown RBP4.77□□□□□ -1.65
VPS13D-209ENST00000487188 FAM74A4Q5TZK3 123 aa4.77□□□□□ -1.65
VPS13D-209ENST00000487188 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.77□□□□□ -1.65
VPS13D-209ENST00000487188 NUP37Q8NFH4 326 aa4.77□□□□□ -1.65
VPS13D-209ENST00000487188 IGFBPL1Q8WX77 278 aa4.77□□□□□ -1.65
VPS13D-209ENST00000487188 ODF3Q96PU9 254 aa4.77□□□□□ -1.65
VPS13D-209ENST00000487188 TNFRSF13BO14836 293 aaPredicted RBP4.77□□□□□ -1.65
VPS13D-209ENST00000487188 IGLV1-47P01700 117 aa4.77□□□□□ -1.65
VPS13D-209ENST00000487188 IGKV3-7A0A075B6H7 116 aa4.77□□□□□ -1.65
VPS13D-209ENST00000487188 CD3EP07766 207 aa4.77□□□□□ -1.65
VPS13D-209ENST00000487188 RNASE4P34096 147 aaKnown RBP4.77□□□□□ -1.65
VPS13D-209ENST00000487188 RPL39P62891 51 aaKnown RBP4.77□□□□□ -1.65
VPS13D-209ENST00000487188 CLEC19AQ6UXS0 136 aa4.77□□□□□ -1.65
VPS13D-209ENST00000487188 FANCD2OSQ96PS1 177 aa4.77□□□□□ -1.65
VPS13D-209ENST00000487188 ARHGAP32A7KAX9 2087 aa4.77□□□□□ -1.65
VPS13D-209ENST00000487188 ZFHX4Q86UP3 3567 aa4.76□□□□□ -1.65
VPS13D-209ENST00000487188 LYNX1G3V0Z9 82 aa4.76□□□□□ -1.65
VPS13D-209ENST00000487188 H3BT86 120 aa4.76□□□□□ -1.65
VPS13D-209ENST00000487188 VCYO14598 125 aa4.76□□□□□ -1.65
VPS13D-209ENST00000487188 IGHG4P01861 327 aa4.76□□□□□ -1.65
VPS13D-209ENST00000487188 LYNX1P0DP58 116 aa4.76□□□□□ -1.65
VPS13D-209ENST00000487188 TSPEAR-AS2P59090 65 aa4.76□□□□□ -1.65
VPS13D-209ENST00000487188 C15orf32Q32M92 178 aa4.76□□□□□ -1.65
VPS13D-209ENST00000487188 ABCA4P78363 2273 aa4.76□□□□□ -1.65
VPS13D-209ENST00000487188 TRAV12-3A0A0B4J271 114 aa4.76□□□□□ -1.65
VPS13D-209ENST00000487188 LEPROTO15243 131 aa4.76□□□□□ -1.65
VPS13D-209ENST00000487188 CTSGP08311 255 aa4.76□□□□□ -1.65
VPS13D-209ENST00000487188 OR13C6PQ8NH95 151 aa4.76□□□□□ -1.65
VPS13D-209ENST00000487188 TMEM263Q8WUH6 116 aaKnown RBP4.76□□□□□ -1.65
VPS13D-209ENST00000487188 RNASE6Q93091 150 aaKnown RBP4.76□□□□□ -1.65
VPS13D-209ENST00000487188 ICOSQ9Y6W8 199 aa4.76□□□□□ -1.65
VPS13D-209ENST00000487188 J3KT08 172 aa4.76□□□□□ -1.65
VPS13D-209ENST00000487188 TRIAP1O43715 76 aa4.76□□□□□ -1.65
VPS13D-209ENST00000487188 C5orf47Q569G3 176 aa4.76□□□□□ -1.65
VPS13D-209ENST00000487188 MDFICQ9P1T7 246 aa4.76□□□□□ -1.65
VPS13D-209ENST00000487188 TRGV11A0A075B6L2 103 aa4.75□□□□□ -1.65
VPS13D-209ENST00000487188 A0A1W2PNU3 283 aaPredicted RBP4.75□□□□□ -1.65
VPS13D-209ENST00000487188 ADARB2-AS1A8MUL3 147 aa4.75□□□□□ -1.65
VPS13D-209ENST00000487188 KAAG1Q9UBP8 84 aa4.75□□□□□ -1.65
VPS13D-209ENST00000487188 CACNA1AO00555 2505 aa4.75□□□□□ -1.65
VPS13D-209ENST00000487188 IGLV4-69A0A075B6H9 119 aa4.75□□□□□ -1.65
VPS13D-209ENST00000487188 NDPQ00604 133 aa4.75□□□□□ -1.65
VPS13D-209ENST00000487188 SEM1Q6ZVN7 128 aa4.75□□□□□ -1.65
VPS13D-209ENST00000487188 CLEC2BQ92478 149 aa4.75□□□□□ -1.65
VPS13D-209ENST00000487188 EDA2RQ9HAV5 297 aa4.75□□□□□ -1.65
VPS13D-209ENST00000487188 A0A087WWL8 130 aa4.75□□□□□ -1.65
VPS13D-209ENST00000487188 SDHAF1A6NFY7 115 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms