RNA–Protein interactions for RNA: ENST00000485055.5

CCDC39-205, Transcript of coiled-coil domain containing 39, humanhuman

TSL 1 (best)

Gene CCDC39, Length 2,874 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-205ENST00000485055 C9JQL5 133 aa3.84□□□□□ -1.8
CCDC39-205ENST00000485055 J3QRK9 145 aa3.84□□□□□ -1.8
CCDC39-205ENST00000485055 NDPQ00604 133 aa3.84□□□□□ -1.8
CCDC39-205ENST00000485055 SSBP1Q04837 148 aaKnown RBP3.84□□□□□ -1.8
CCDC39-205ENST00000485055 KTN1-AS1Q86SY8 53 aa3.84□□□□□ -1.8
CCDC39-205ENST00000485055 GPHB5Q86YW7 130 aa3.84□□□□□ -1.8
CCDC39-205ENST00000485055 PRR15Q8IV56 129 aa3.84□□□□□ -1.8
CCDC39-205ENST00000485055 NUP35Q8NFH5 326 aa3.84□□□□□ -1.8
CCDC39-205ENST00000485055 VSTM2AQ8TAG5 236 aa3.84□□□□□ -1.8
CCDC39-205ENST00000485055 LEAP2Q969E1 77 aa3.84□□□□□ -1.8
CCDC39-205ENST00000485055 PARP12Q9H0J9 701 aaKnown RBP3.84□□□□□ -1.8
CCDC39-205ENST00000485055 RPL37AP8A6NKH3 93 aa3.83□□□□□ -1.8
CCDC39-205ENST00000485055 RPL23P62829 140 aaKnown RBP3.83□□□□□ -1.8
CCDC39-205ENST00000485055 GNB1P62873 340 aa3.83□□□□□ -1.8
CCDC39-205ENST00000485055 IGLV5-37A0A075B6J1 123 aa3.83□□□□□ -1.8
CCDC39-205ENST00000485055 ZNF736B4DX44 427 aaPredicted RBP3.83□□□□□ -1.8
CCDC39-205ENST00000485055 H3BSH0 61 aa3.83□□□□□ -1.8
CCDC39-205ENST00000485055 COX7A2LO14548 114 aa3.83□□□□□ -1.8
CCDC39-205ENST00000485055 DEDDO75618 318 aa3.83□□□□□ -1.8
CCDC39-205ENST00000485055 CXCL1P09341 107 aa3.83□□□□□ -1.8
CCDC39-205ENST00000485055 FABP2P12104 132 aa3.83□□□□□ -1.8
CCDC39-205ENST00000485055 TPPP2P59282 170 aa3.83□□□□□ -1.8
CCDC39-205ENST00000485055 INSL4Q14641 139 aa3.83□□□□□ -1.8
CCDC39-205ENST00000485055 IZUMO2Q6UXV1 221 aa3.83□□□□□ -1.8
CCDC39-205ENST00000485055 RAB2BQ8WUD1 216 aa3.83□□□□□ -1.8
CCDC39-205ENST00000485055 GNPNAT1Q96EK6 184 aaPredicted RBP3.83□□□□□ -1.8
CCDC39-205ENST00000485055 WDR61Q9GZS3 305 aaKnown RBP3.83□□□□□ -1.8
CCDC39-205ENST00000485055 EIF5A2Q9GZV4 153 aaKnown RBP3.83□□□□□ -1.8
CCDC39-205ENST00000485055 TRBV20OR9-2A0A075B6H5 130 aa3.82□□□□□ -1.8
CCDC39-205ENST00000485055 IGHV3-43A0A0B4J1X8 118 aa3.82□□□□□ -1.8
CCDC39-205ENST00000485055 TRAV2A0A0B4J234 112 aa3.82□□□□□ -1.8
CCDC39-205ENST00000485055 TAX1BP3O14907 124 aa3.82□□□□□ -1.8
CCDC39-205ENST00000485055 IGLV2-8P01709 118 aa3.82□□□□□ -1.8
CCDC39-205ENST00000485055 APOC3P02656 99 aa3.82□□□□□ -1.8
CCDC39-205ENST00000485055 IGHV3-43DP0DP04 118 aa3.82□□□□□ -1.8
CCDC39-205ENST00000485055 CD24P25063 80 aa3.82□□□□□ -1.8
CCDC39-205ENST00000485055 C18orf65Q6ZTR6 163 aa3.82□□□□□ -1.8
CCDC39-205ENST00000485055 RPP25LQ8N5L8 163 aaKnown RBP3.82□□□□□ -1.8
CCDC39-205ENST00000485055 LINC00476Q8WZB0 136 aa3.82□□□□□ -1.8
CCDC39-205ENST00000485055 TCRAP04437 139 aa3.82□□□□□ -1.8
CCDC39-205ENST00000485055 RPL39P5Q59GN2 51 aa3.82□□□□□ -1.8
CCDC39-205ENST00000485055 FAM53AQ6NSI3 398 aaPredicted RBP3.82□□□□□ -1.8
CCDC39-205ENST00000485055 C15orf40Q8WUR7 153 aa3.82□□□□□ -1.8
CCDC39-205ENST00000485055 ZNF471Q9BX82 626 aaPredicted RBP3.82□□□□□ -1.8
CCDC39-205ENST00000485055 TRBV7-1A0A0A6YYK4 115 aa3.81□□□□□ -1.8
CCDC39-205ENST00000485055 IFITM10A6NMD0 228 aa3.81□□□□□ -1.8
CCDC39-205ENST00000485055 ZNF73O43830 326 aaPredicted RBP3.81□□□□□ -1.8
CCDC39-205ENST00000485055 OR10J1P30954 320 aa3.81□□□□□ -1.8
CCDC39-205ENST00000485055 FXYD3Q14802 87 aa3.81□□□□□ -1.8
CCDC39-205ENST00000485055 LCNL1Q6ZST4 164 aa3.81□□□□□ -1.8
CCDC39-205ENST00000485055 SPIN2AQ99865 258 aa3.81□□□□□ -1.8
CCDC39-205ENST00000485055 SPIN2BQ9BPZ2 258 aa3.81□□□□□ -1.8
CCDC39-205ENST00000485055 ZNF586Q9NXT0 402 aa3.81□□□□□ -1.8
CCDC39-205ENST00000485055 CACFD1Q9UGQ2 172 aa3.81□□□□□ -1.8
CCDC39-205ENST00000485055 U3KQK5 164 aa3.81□□□□□ -1.8
CCDC39-205ENST00000485055 DNAH1Q9P2D7 4330 aa3.81□□□□□ -1.8
CCDC39-205ENST00000485055 HRASP01112 189 aa3.81□□□□□ -1.8
CCDC39-205ENST00000485055 IGKV1-16P04430 117 aa3.81□□□□□ -1.8
CCDC39-205ENST00000485055 P0C879 139 aa3.81□□□□□ -1.8
CCDC39-205ENST00000485055 SDC2P34741 201 aa3.81□□□□□ -1.8
CCDC39-205ENST00000485055 FKBP11Q9NYL4 201 aa3.81□□□□□ -1.8
CCDC39-205ENST00000485055 CACNG5Q9UF02 275 aa3.81□□□□□ -1.8
CCDC39-205ENST00000485055 FUT9Q9Y231 359 aa3.81□□□□□ -1.8
CCDC39-205ENST00000485055 IGLV11-55A0A075B6I3 123 aa3.81□□□□□ -1.8
CCDC39-205ENST00000485055 MUC21A0A0G2JKD1 596 aa3.81□□□□□ -1.8
CCDC39-205ENST00000485055 P0DMU3 169 aa3.81□□□□□ -1.8
CCDC39-205ENST00000485055 FAM231AP0DMU4 169 aa3.81□□□□□ -1.8
CCDC39-205ENST00000485055 FAM231CP0DMU5 169 aa3.81□□□□□ -1.8
CCDC39-205ENST00000485055 PGAM2P15259 253 aa3.81□□□□□ -1.8
CCDC39-205ENST00000485055 ZNF80P51504 273 aaPredicted RBP3.81□□□□□ -1.8
CCDC39-205ENST00000485055 CMC4P56277 68 aaPredicted RBP3.81□□□□□ -1.8
CCDC39-205ENST00000485055 ICAM4Q14773 271 aa3.81□□□□□ -1.8
CCDC39-205ENST00000485055 ZNF329Q86UD4 541 aa3.81□□□□□ -1.8
CCDC39-205ENST00000485055 STPG4Q8N801 248 aa3.81□□□□□ -1.8
CCDC39-205ENST00000485055 SLC25A46Q96AG3 418 aa3.81□□□□□ -1.8
CCDC39-205ENST00000485055 HDHD3Q9BSH5 251 aaPredicted RBP3.81□□□□□ -1.8
CCDC39-205ENST00000485055 DNAH6Q9C0G6 4158 aa3.8□□□□□ -1.8
CCDC39-205ENST00000485055 IGHV4OR15-8A0A075B7B6 117 aa3.8□□□□□ -1.8
CCDC39-205ENST00000485055 A0A087WW49 117 aa3.8□□□□□ -1.8
CCDC39-205ENST00000485055 A0A087WXM4 84 aa3.8□□□□□ -1.8
CCDC39-205ENST00000485055 ZNF727A8MUV8 499 aa3.8□□□□□ -1.8
CCDC39-205ENST00000485055 G3V318 75 aa3.8□□□□□ -1.8
CCDC39-205ENST00000485055 LINC00869P0C866 280 aa3.8□□□□□ -1.8
CCDC39-205ENST00000485055 LINC00205P59089 165 aa3.8□□□□□ -1.8
CCDC39-205ENST00000485055 ERVK-16P61578 105 aa3.8□□□□□ -1.8
CCDC39-205ENST00000485055 DPH3Q96FX2 82 aa3.8□□□□□ -1.8
CCDC39-205ENST00000485055 ZNF414Q96IQ9 312 aa3.8□□□□□ -1.8
CCDC39-205ENST00000485055 TIMM17AQ99595 171 aa3.8□□□□□ -1.8
CCDC39-205ENST00000485055 MED9Q9NWA0 146 aa3.8□□□□□ -1.8
CCDC39-205ENST00000485055 SMAD5-AS1Q9Y6J3 95 aa3.8□□□□□ -1.8
CCDC39-205ENST00000485055 IGHV3-72A0A0B4J1Y9 119 aa3.8□□□□□ -1.8
CCDC39-205ENST00000485055 IZUMO1RA6ND01 250 aa3.8□□□□□ -1.8
CCDC39-205ENST00000485055 SUMO4Q6EEV6 95 aa3.8□□□□□ -1.8
CCDC39-205ENST00000485055 UNQ5815/PRO19632Q6UWF5 114 aa3.8□□□□□ -1.8
CCDC39-205ENST00000485055 FOXI2Q6ZQN5 318 aa3.8□□□□□ -1.8
CCDC39-205ENST00000485055 SND1-IT1Q9HBX3 110 aa3.8□□□□□ -1.8
CCDC39-205ENST00000485055 MDFICQ9P1T7 246 aa3.8□□□□□ -1.8
CCDC39-205ENST00000485055 LAMTOR3Q9UHA4 124 aa3.8□□□□□ -1.8
CCDC39-205ENST00000485055 ALMS1Q8TCU4 4167 aa3.79□□□□□ -1.8
CCDC39-205ENST00000485055 HUWE1Q7Z6Z7 4374 aaKnown RBP3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 150.4 ms